Homology
BLAST of IVF0009560 vs. ExPASy Swiss-Prot
Match:
Q9LK40 (DNA-directed RNA polymerases IV and V subunit 2 OS=Arabidopsis thaliana OX=3702 GN=NRPD2 PE=1 SV=1)
HSP 1 Score: 1388.6 bits (3593), Expect = 0.0e+00
Identity = 698/1187 (58.80%), Postives = 865/1187 (72.87%), Query Frame = 0
Query: 21 PGMDLDTDDDDDYYSE--PVNINDLGEAFLKDFCK-------------NHQINSYNDFIK 80
P MD+D D +++ + +N+++LGE FL+ FCK +HQ+NSYN FI+
Sbjct: 2 PDMDIDVKDLEEFEATTGEINLSELGEGFLQSFCKKAATSFFDKYGLISHQLNSYNYFIE 61
Query: 81 NGVQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYNMLP 140
+G+Q F FG++LV+P +D KK D +WRYA+VKFG+VT++KP F+ + KE LP
Sbjct: 62 HGLQNVFQSFGEMLVEPSFDVVKKKDNDWRYATVKFGEVTVEKPTFF---SDDKELEFLP 121
Query: 141 RHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRL 200
HARLQNMTYS+R+K+N+ +E++ +V SDKFKTG+D YV+K+ ++ +D+ IG +
Sbjct: 122 WHARLQNMTYSARIKVNVQVEVFKNTVVKSDKFKTGQDNYVEKKILD--VKKQDILIGSI 181
Query: 201 PVMVNSDLCWMKDE-----QKRDCEFDRGGYFLIKGAEKVNIYCSRAICLRRLWISNVQG 260
PVMV S LC ++ +K DC FD+GGYF+IKGAEKV I +C +RLWISN
Sbjct: 182 PVMVKSILCKTSEKGKENCKKGDCAFDQGGYFVIKGAEKVFI-AQEQMCTKRLWISN-SP 241
Query: 261 WTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWILFFALGVSSDKE- 320
WTV++RSE KRNR I+RL EN K+ED K +EKVL VYFLSTE+PVW+LFFALGVSSDKE
Sbjct: 242 WTVSFRSENKRNRFIVRLSENEKAEDYKRREKVLTVYFLSTEIPVWLLFFALGVSSDKEA 301
Query: 321 --------------------------IWKDFRRGKRALTFLDNEIRKTSFPPAEKIEDCL 380
+ + FR G ALT+++ +I+ T FPPAE +++CL
Sbjct: 302 MDLIAFDGDDASITNSLIASIHVADAVCEAFRCGNNALTYVEQQIKSTKFPPAESVDECL 361
Query: 381 NLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVH 440
+LYLF L+ LK+K FLGYMVKCLL +Y G+RKC+NRD FRNKR ELA ELLERE++VH
Sbjct: 362 HLYLFPGLQSLKKKARFLGYMVKCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRVH 421
Query: 441 IAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGV 500
+AHARR+M +A+Q+ L GD ++PIEHYLDAS+ITNGLSRAFSTGAW+H F++MER+SGV
Sbjct: 422 LAHARRKMTRAMQKHLSGDGDLKPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGV 481
Query: 501 VATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNL 560
VA LGRANPLQT+ +LRRTRQQV YTGKVGDARYPHPSHWGRVCFLSTPDGENCGL+KN+
Sbjct: 482 VANLGRANPLQTLIDLRRTRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNM 541
Query: 561 SGTGLVSLNTTKPIIPTLFCCGMENLADNTSTSLCGKYRIFLDGEWVGVCEDSLSFVTKV 620
S GLVS + + ++ LF CGME L D+T T L GK+++ L+G+WVG+C DS SFV ++
Sbjct: 542 SLLGLVSTQSLESVVEKLFACGMEELMDDTCTPLFGKHKVLLNGDWVGLCADSESFVAEL 601
Query: 621 RRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLL 680
+ +RR++ ++E+KRD+ EVRIF+DAGR+LRPLLVVENL ++ + K Y F LL
Sbjct: 602 KSRRRQSELPREMEIKRDKDDNEVRIFTDAGRLLRPLLVVENLQKLKQEKPSQYPFDHLL 661
Query: 681 DKGIIELVGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLGLSCGLVPFANHDHA 740
D GI+EL+G EEEEDC AW IK L+++ Y+HCELD+SFLLG+SC +VPFANHDH
Sbjct: 662 DHGILELIGIEEEEDCNTAWGIKQLLKEPKI--YTHCELDLSFLLGVSCAVVPFANHDHG 721
Query: 741 RRALFQSQKHSNQAIGFSTTNSNFRA-------------TFRTMTADCLGTPGYLSS--- 800
RR L+QSQKH QAIGFS+TN N R F+T+ ++CL +
Sbjct: 722 RRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLKKEVLFNGQNA 781
Query: 801 ------HTVYSPNPSSIMVRMLLWQSMFTWVTTRRFITYRSYKAEVDNKESSEKRRKSDD 860
H Y+ S +M + L + MF R RSYKAEVD K+ SEKR+K D+
Sbjct: 782 IVAVNVHLGYNQEDSIVMNKASLERGMF------RSEQIRSYKAEVDAKD-SEKRKKMDE 841
Query: 861 TINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQK 920
+ FGKT SKIG+VDSL+DDGFP+IGAN+ +GDIVIGRC ESGADHSIKLKHTE+G+VQK
Sbjct: 842 LVQFGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQK 901
Query: 921 VVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIV 980
VVLSSND+GKN+A VSLRQVRSPCLGDKFSSMHGQKGVLG+LE Q+NFPFTIQGIVPDIV
Sbjct: 902 VVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIV 961
Query: 981 INPHAFPSHRC--------------------------WRFSEICNAFLNSSVDAITDQLH 1040
INPHAFPS + + + F V IT+QLH
Sbjct: 962 INPHAFPSRQTPGQLLEAALSKGIACPIQKEGSSAAYTKLTRHATPFSTPGVTEITEQLH 1021
Query: 1041 RAGFSRWGSERVYNGRTGEMMRSLIFM-------------DKVKFRNTGPVHPLTRQPVA 1100
RAGFSRWG+ERVYNGR+GEMMRS+IFM DKVKFRNTGPVHPLTRQPVA
Sbjct: 1022 RAGFSRWGNERVYNGRSGEMMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVA 1081
BLAST of IVF0009560 vs. ExPASy Swiss-Prot
Match:
Q9LV32 (DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana OX=3702 GN=NRPD2b PE=2 SV=1)
HSP 1 Score: 1315.4 bits (3403), Expect = 0.0e+00
Identity = 673/1179 (57.08%), Postives = 831/1179 (70.48%), Query Frame = 0
Query: 28 DDDDDYYSEPVNINDLGEAFLKDFCK-------------NHQINSYNDFIKNGVQKAFDF 87
D D+ + +NI++LGE+FL+ FCK +HQ+NSYN FI++G+Q F+
Sbjct: 2 DVDEIESAGQINISELGESFLQTFCKKAATSFFEEFGLISHQLNSYNFFIEHGLQNVFES 61
Query: 88 FGDILVQPGYDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYNMLPRHARLQNMT 147
FGDILV+P +D KK DG+WRYA+V F K+
Sbjct: 62 FGDILVEPSFDVIKKKDGDWRYATV-FKKI------------------------------ 121
Query: 148 YSSRMKINISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLC 207
++ DKFKTG+D+YV+KE ++ +D+ IG +PVMV S LC
Sbjct: 122 -----------------VIKHDKFKTGQDEYVEKEILD--VKKQDILIGSIPVMVKSVLC 181
Query: 208 WMKDEQKRDCE-----FDRGGYFLIKGAEKVNIYCSRAICLRRLWISNVQGWTVAYRSEV 267
++ K +C+ FD+GGYF+IKGAEKV I +C +RLWISN WTV++RSE
Sbjct: 182 KTSEKGKENCKKGNCAFDQGGYFVIKGAEKVFI-AQEQMCTKRLWISN-SPWTVSFRSET 241
Query: 268 KRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWILFFALGVSSDKE---------- 327
KRNR I+RL EN K+ED K EKVL VYFLSTE+PVW+LFFALGVSSDKE
Sbjct: 242 KRNRFIVRLSENEKAEDYKIMEKVLTVYFLSTEIPVWLLFFALGVSSDKEAMDLIAFDGD 301
Query: 328 -----------------IWKDFRRGKRALTFLDNEIRKTSFPPAEKIEDCLNLYLFASLK 387
+ + FR G ALT+++++I+ T FPPAE ++DCL LYLF L+
Sbjct: 302 DASITNSLIASIHEADAVCEAFRCGNNALTYVEHQIKSTKFPPAESVDDCLRLYLFPCLQ 361
Query: 388 GLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVHIAHARRRME 447
GLK+K FLGYMVKCLL AY G+RKC+NRD FRNKR ELA ELLERE++VH+AHARR+M
Sbjct: 362 GLKKKARFLGYMVKCLLSAYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMT 421
Query: 448 KALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGVVATLGRANP 507
+A+Q+ L GD ++PIEHYLDAS+ITNGL+RAFSTGAW+H F++MER+SGVVA LGRANP
Sbjct: 422 RAMQKQLSGDGDLKPIEHYLDASVITNGLNRAFSTGAWSHPFRKMERVSGVVANLGRANP 481
Query: 508 LQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSGTGLVSLN 567
LQT+ +LRRTRQQV YTGKVGDAR+PHPSHWGRVCFLSTPDGENCGL+KN+S GLVS
Sbjct: 482 LQTLIDLRRTRQQVLYTGKVGDARHPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQ 541
Query: 568 TTKPIIPTLFCCGMENLADNTSTSLCGKYRIFLDGEWVGVCEDSLSFVTKVRRKRRRNPF 627
+ ++ LF CGME L ++TST LCGK+++ L+G+WVG+C DS SFV +++ +RR++
Sbjct: 542 GLESVVEMLFTCGMEELMNDTSTPLCGKHKVLLNGDWVGLCADSESFVGELKSRRRQSEL 601
Query: 628 LHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKGIIELVG 687
++E+KRD+ EVRIF+DAGR+LRPLLVVENL+++ + K Y F+ LLD+GI+EL+G
Sbjct: 602 PLEMEIKRDKDDNEVRIFTDAGRLLRPLLVVENLHKLKQDKPTQYPFKHLLDQGILELIG 661
Query: 688 TEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQK 747
EEEEDC AW IK L+++ Y+HCELD+SFLLG+SC +VPFANHDH +R L+QSQK
Sbjct: 662 IEEEEDCTTAWGIKQLLKE--PKNYTHCELDLSFLLGVSCAIVPFANHDHGKRVLYQSQK 721
Query: 748 HSNQAIGFSTTNSNFRA-------------TFRTMTADCLGTPGYLSS---------HTV 807
H QAIGFS+TN N R F+T+ ++CL + H
Sbjct: 722 HCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLEKEVLFNGQNAIVAVNVHLG 781
Query: 808 YSPNPSSIMVRMLLWQSMFTWVTTRRFITYRSYKAEVDNKESSEKRRKSDDTINFGKTQS 867
Y+ S +M + L + MF R RSYKAEVD K+ SEKR+K D+ + FGKT S
Sbjct: 782 YNQEDSIVMNKASLERGMF------RSEQIRSYKAEVDTKD-SEKRKKMDELVQFGKTYS 841
Query: 868 KIGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDG 927
KIG+VDSL+DDGFP+IGAN+ +GDIVIGRC ESGADHSIKLKHTE+G+VQKVVLSSND+G
Sbjct: 842 KIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKVVLSSNDEG 901
Query: 928 KNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSH 987
KN+A VSLRQVRSPCLGDKFSSMHGQKGVLG+LE Q+NFPFTIQGIVPDIVINPHAFPS
Sbjct: 902 KNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSR 961
Query: 988 RC---------------------------WRFSEICNAFLNSSVDAITDQLHRAGFSRWG 1047
+ + + F V IT+QLHRAGFSRWG
Sbjct: 962 QTPGQLLEAALSKGIACPIQKKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWG 1021
Query: 1048 SERVYNGRTGEMMRSLIFM-------------DKVKFRNTGPVHPLTRQPVADRKRFGGI 1100
+ERVYNGR+GEMMRSLIFM +KVKFRNTGPVHPLTRQPVADRKRFGGI
Sbjct: 1022 NERVYNGRSGEMMRSLIFMGPTFYQRLVHMSENKVKFRNTGPVHPLTRQPVADRKRFGGI 1081
BLAST of IVF0009560 vs. ExPASy Swiss-Prot
Match:
P38420 (DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis thaliana OX=3702 GN=NRPB2 PE=1 SV=2)
HSP 1 Score: 514.2 bits (1323), Expect = 3.6e-144
Identity = 368/1211 (30.39%), Postives = 579/1211 (47.81%), Query Frame = 0
Query: 15 EGEDLSPGMDLDTDDDDDYYSEPVNINDLGEAFLKDFCKNHQINSYNDFIKNGVQKAFDF 74
E + P DDDD+ ++ + F + Q++S+++FI+N +Q+ D
Sbjct: 2 EYNEYEPEPQYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 61
Query: 75 FGDILVQP--GYDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYNMLPRHARLQN 134
DI ++P ++P + D + FG++ L KP + G+ + P+ ARL+N
Sbjct: 62 SADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMM--TESDGETATLFPKAARLRN 121
Query: 135 MTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSD 194
+TYS+ + ++++ + K G D E V D VFIG++P+M+ S
Sbjct: 122 LTYSAPLYVDVTKRV----------IKKGH----DGEEVTETQDFTKVFIGKVPIMLRSS 181
Query: 195 LCWMKDEQKRD------CEFDRGGYFLIKGAEKVNIYCSRAICLRRLWISNVQGWTVAYR 254
C + ++D C +D+GGYF+I G+EKV I + Q AY
Sbjct: 182 YCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 241
Query: 255 SEVK-----RNR----LIIRLVENSKSEDLKSKEKV-LNVYFLSTEVPVWILFFALGVSS 314
EV+ +NR + +R++ + ++ S + + + ++ TE+P+ I+F ALG +
Sbjct: 242 GEVRSMAENQNRPPSTMFVRMLARASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVA 301
Query: 315 DKEIWKDFRRGKRALTFLDNEIRKTSFPPAEK---IEDCLNLYLFASLKGL--------- 374
DK+I + F D ++ + P E+ I++ L + +G
Sbjct: 302 DKDILEHI-----CYDFADTQMMELLRPSLEEAFVIQNQLVALDYIGKRGATVGVTKEKR 361
Query: 375 -----------------------KQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFEL 434
+K ++ GY++ LL GRR D+RD + NKR +L
Sbjct: 362 IKYARDILQKEMLPHVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDL 421
Query: 435 AAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGAWA 494
A LL ++ R + +Q+ + ++V ++ + A IT+GL + +TG W
Sbjct: 422 AGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVN-LQFAIKAKTITSGLKYSLATGNWG 481
Query: 495 HAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLST 554
A R +GV L R T++ LRR + GK+ R H S WG +C T
Sbjct: 482 QANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAET 541
Query: 555 PDGENCGLIKNLSGTGLVSLNTTK-PIIPTLFCCGMENLADNTSTSLCGKYRIFLDGEWV 614
P+G+ CGL+KNL+ +++ + PI+ L G EN + + + + +IF++G WV
Sbjct: 542 PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWV 601
Query: 615 GVCEDSLSFVTKVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRID 674
GV D V +RR RRR +V V RD +LKE+RI++D GR RPL +V+N +
Sbjct: 602 GVHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQKLLI 661
Query: 675 KSK----------GENYTFQSLLDKGIIELVGTEEEEDCRVAWSIKHLM------EDEGT 734
K + E + L+ KG IE + TEEEE ++ +I L+ E+ T
Sbjct: 662 KKRDIYALQQRESAEEDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYT 721
Query: 735 TKYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRAT---- 794
Y+HCE+ S +LG+ ++PF +H+ + R +QS QA+G TN FR
Sbjct: 722 ENYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGIYVTNYQFRMDTLAY 781
Query: 795 -------------------FRTMTADCLGTPGYLSSHTVYSPNPSSIMVRMLLWQSMFTW 854
FR + A + +S ++ Y+ S IM + + + F
Sbjct: 782 VLYYPQKPLVTTRAMEHLHFRQLPAG-INAIVAISCYSGYNQEDSVIMNQSSIDRGFF-- 841
Query: 855 VTTRRFITYRSYKAEVDNKESSEKRRKSDDTINFGKTQS-KIGRVDSLDDDGFPYIGANL 914
R + +RSY+ E K+ ++ + G T + G D LDDDG G +
Sbjct: 842 ----RSLFFRSYRDE--EKKMGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRV 901
Query: 915 QSGDIVIGRCAE-------------SGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVS 974
D++IG+ + DHSI L+H+E GMV +V+L++N DG + V
Sbjct: 902 SGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVR 961
Query: 975 LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSHRCWRFSE 1034
+R VR P +GDKFSS HGQKG +G +QE+ P+TI+G+ PDI++NPHA PS
Sbjct: 962 VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLI 1021
Query: 1035 IC---------------NAFLNSSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFM 1091
C F + +VD I+ LH+ G+ G ER+YNG TG + ++IF+
Sbjct: 1022 ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRPLTAMIFL 1081
BLAST of IVF0009560 vs. ExPASy Swiss-Prot
Match:
Q42877 (DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum OX=4081 GN=RPB2 PE=2 SV=1)
HSP 1 Score: 504.2 bits (1297), Expect = 3.7e-141
Identity = 359/1205 (29.79%), Postives = 572/1205 (47.47%), Query Frame = 0
Query: 26 DTDDDDDYYSEPVNINDLGEAFLKDFCKNHQINSYNDFIKNGVQKAFDFFGDILVQP--G 85
+ DDD++ ++ + F + Q++S+++FI+N +Q+ D DI ++P
Sbjct: 12 NVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQ 71
Query: 86 YDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINI 145
++P + D + FG++ L KP + G+ + P+ ARL+N+TYS+ + +++
Sbjct: 72 HNPGHQSDFAETIYKINFGQIYLSKPMM--TESDGETATLFPKAARLRNLTYSAPLYVDV 131
Query: 146 SLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRD 205
+ + K G D E V D VFIG++P+M+ S C + ++D
Sbjct: 132 TKRV----------IKKGH----DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKD 191
Query: 206 ------CEFDRGGYFLIKGAEKVNIYCSRAICLRRLWISNVQGWTVAYRSEVK-----RN 265
C D+GGYF+I G+EKV I + Q A+ +EV+ +N
Sbjct: 192 LTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMADTQN 251
Query: 266 R----LIIRLVENSKSEDLKSKEKV-LNVYFLSTEVPVWILFFALGVSSDKEIWKDFRRG 325
R + +R++ + ++ S + + + ++ TE+P+ I+F ALG +DK+I +
Sbjct: 252 RPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI--- 311
Query: 326 KRALTFLDNEIRKTSFPPAEKIEDCLNLYLFASLKGLK---------------------- 385
F D ++ + P E+ N + G +
Sbjct: 312 --CYDFNDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKE 371
Query: 386 -------------QKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELAAELLERELKV 445
+K ++ GY++ LL GRR D+RD + NKR +LA LL ++
Sbjct: 372 MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 431
Query: 446 HIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERISG 505
R + +Q+ + + V ++ + A IT+GL + +TG W A R +G
Sbjct: 432 LFRKLTRDVRGYVQKCVDNGKDVN-LQFAIKAKTITSGLKYSLATGNWGQANAAGTR-AG 491
Query: 506 VVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKN 565
V L R T++ LRR + GK+ R H S WG +C TP+G+ CGL+KN
Sbjct: 492 VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 551
Query: 566 LSGTGLVSLNTTK-PIIPTLFCCGMENLADNTSTSLCGKYRIFLDGEWVGVCEDSLSFVT 625
L+ +++ + PI+ L G EN + + + +IF++G WVG+ D V
Sbjct: 552 LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVR 611
Query: 626 KVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRIDKSKG------- 685
+RR RRR +V V RD +LKE+RI++D GR RPL +VE + K K
Sbjct: 612 TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQR 671
Query: 686 ---ENYTFQSLLDKGIIELVGTEEEEDCRVAWSIKHLME------DEGTTKYSHCELDMS 745
+ + L+ KG IE + TEEEE ++ +I L++ D + Y+HCE+ S
Sbjct: 672 ESPDEGGWHDLVAKGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPS 731
Query: 746 FLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRAT--------------- 805
+LG+ ++PF +H+ + R +QS QA+G TN FR
Sbjct: 732 LILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 791
Query: 806 --------FRTMTADCLGTPGYLSSHTVYSPNPSSIMVRMLLWQSMFTWVTTRRFITYRS 865
FR + A + +S ++ Y+ S IM + + + F R + +RS
Sbjct: 792 TRAMEHLHFRQLPAG-INAIVAISCYSGYNQEDSVIMNQSSIDRGFF------RSLFFRS 851
Query: 866 YKAEVDNKESSEKRRKSDDTINFGKTQ------SKIGRVDSLDDDGFPYIGANLQSGDIV 925
Y+ E EK+ + +FG+ + G D LDDDG G + D++
Sbjct: 852 YRDE-------EKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVI 911
Query: 926 IGRCAE-------------SGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRS 985
IG+ + DHS L+H+E GMV +V+L++N DG + V +R VR
Sbjct: 912 IGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRI 971
Query: 986 PCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSHRCWRFSEIC---- 1045
P +GDKFSS HGQKG +G +QE+ P+T++GI PDI++NPHA PS C
Sbjct: 972 PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK 1031
Query: 1046 -----------NAFLNSSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFM------ 1091
F + +VD I+ LH+ G+ G E +YNG TG + ++IF+
Sbjct: 1032 VAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQ 1091
BLAST of IVF0009560 vs. ExPASy Swiss-Prot
Match:
Q6FLD5 (DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=RPB2 PE=3 SV=1)
HSP 1 Score: 480.3 bits (1235), Expect = 5.7e-134
Identity = 366/1244 (29.42%), Postives = 570/1244 (45.82%), Query Frame = 0
Query: 29 DDDDYYSE----------PVNIND----LGEAFLKDFCKNHQINSYNDFIKNGVQKAFDF 88
D++DYY E P+ D + F + + Q++S+N F+ +Q
Sbjct: 4 DNEDYYDEDPYGFEEENAPITAEDTWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISE 63
Query: 89 FGDILVQPGYDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYNMLPRHARLQNMT 148
++++ + + D R + FGK+ + KP + G + + P+ ARL+N+T
Sbjct: 64 DSTLILEQLAQHTTEQDNISRKYEISFGKIYVTKPMV--NESDGVTHALYPQEARLRNLT 123
Query: 149 YSSRMKINISLEIYTQKLVSSDKFKTGKD---QYVDKEPVEGASDNRDVFIGRLPVMVNS 208
YSS + ++++ Y V G+D Q + +E E S++ VFIGRLP+M+ S
Sbjct: 124 YSSGLFVDVTKRTYEAVDV------PGRDLNYQLIAEESEED-SESGKVFIGRLPIMLRS 183
Query: 209 DLCWMKDEQKRD------CEFDRGGYFLIKGAEKVNIYCSRAICLRRLWISNVQGWTVAY 268
C++ D + D C FD GGYF+I G+EKV I R+ +++
Sbjct: 184 KNCYLSDATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISH 243
Query: 269 RSEV-----KRNRLIIRL-VENSKSEDLKSKEKVLNVYFLSTEVPVWILFFALGVSSDKE 328
+E+ K +R I L V+ E ++ + ++ ++P+ I+F ALG+ D E
Sbjct: 244 VAEIRSALEKGSRFISTLQVKLYGRESSSARTIKATLPYIKQDIPIVIIFRALGIIPDGE 303
Query: 329 I----------WKDFRRGK-------------RALTFLDNEIRKTSFPPAEKIE---DCL 388
I W+ K AL F+ ++I+ D L
Sbjct: 304 ILEHICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDIL 363
Query: 389 N---LYLFASLKGLK-QKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELAAELLERE 448
L L+G + +K FLGYM+ LL R+ D+RD F KR +LA LL +
Sbjct: 364 QKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQL 423
Query: 449 LKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGAWAHAFKRMER 508
K + + + +QR + ++ ++A IT+GL A +TG W K M
Sbjct: 424 FKTLFRKLTKDIFRYMQRTVEEANDFN-MKLAINAKTITSGLKYALATGNWGEQKKAMSS 483
Query: 509 ISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGL 568
+GV L R T++ LRRT + GK+ R H +HWG VC TP+G+ CGL
Sbjct: 484 RAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGL 543
Query: 569 IKNLSGTGLVSLNT-TKPIIPTLFCCGMENLADNTSTSLCGKYRIFLDGEWVGVCEDSLS 628
+KNLS +S+ PII L GME L D R+F++G W GV +
Sbjct: 544 VKNLSLMSCISVGADPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPAR 603
Query: 629 FVTKVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRIDKSK----- 688
+ +R RR+ +V + RD + +E++IF+DAGR+ RPL +VE+ + + +
Sbjct: 604 LMETLRTLRRKGDINPEVSMIRDIREQELKIFTDAGRVYRPLFIVEDDEELGRKELKVRK 663
Query: 689 --------------------GENYTFQSLLDKGIIELVGTEEEEDCRVAWS--------- 748
E+YT+ SLL++G++E + EEEE +A
Sbjct: 664 GHVAKLMATEYQDIEGGFEDAEDYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPTAV 723
Query: 749 -----------IKHLMEDEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKH 808
K + T ++HCE+ S +LG++ ++PF +H+ + R +QS
Sbjct: 724 EQDIPKENVDLAKRIKVTHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAM- 783
Query: 809 SNQAIGFSTTNSNFR----ATFRTMTADCLGTPG------------------YLSSHTVY 868
QA+G TN NFR A LGT ++ ++ Y
Sbjct: 784 GKQAMGVFLTNYNFRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGY 843
Query: 869 SPNPSSIMVRMLLWQSMFTWVTTRRFITYRSYKAEVDNKESSEKRRKSDDTINFGKTQ-- 928
+ S IM + + + +F R + +RSY EK+ T F K Q
Sbjct: 844 NQEDSMIMNQSSIDRGLF------RSLFFRSYM-------DQEKKYGMSITETFEKPQRT 903
Query: 929 ----SKIGRVDSLDDDGFPYIGANLQSGDIVIGRCA---------------ESGADHSIK 988
K G D LD+DG G + DI+IG+ S D S
Sbjct: 904 NTLRMKHGTYDKLDEDGLIAPGVRVSGEDIIIGKTTPIAPDEEELGQRTAYHSKRDASTP 963
Query: 989 LKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFP 1048
L+ TE G+V +V++++N DG + V +R + P +GDKF+S HGQKG +G +E+ P
Sbjct: 964 LRSTENGIVDQVLITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMP 1023
Query: 1049 FTIQGIVPDIVINPHAFPSHRCWRFSEIC---------------NAFLNSSVDAITDQLH 1097
FT +GIVPD++INPHA PS C + F + +V+ I+ L
Sbjct: 1024 FTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLR 1083
BLAST of IVF0009560 vs. ExPASy TrEMBL
Match:
A0A5D3D8Y5 (DNA-directed RNA polymerase subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001250 PE=3 SV=1)
HSP 1 Score: 2058.9 bits (5333), Expect = 0.0e+00
Identity = 1052/1204 (87.38%), Postives = 1058/1204 (87.87%), Query Frame = 0
Query: 1 MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNINDLGEAFLKDFCK------- 60
MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNINDLGEAFLKDFCK
Sbjct: 1 MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNINDLGEAFLKDFCKKSSMAFF 60
Query: 61 ------NHQINSYNDFIKNGVQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
+HQINSYNDFIKNGVQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD
Sbjct: 61 NQYGLISHQINSYNDFIKNGVQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
Query: 121 KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180
KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD
Sbjct: 121 KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180
Query: 181 KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRGGYFLIKGAEKVNIYCSRA 240
KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRGGYFLIKGAEK+ I
Sbjct: 181 KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRGGYFLIKGAEKIFI-AQEQ 240
Query: 241 ICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWI 300
ICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWI
Sbjct: 241 ICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWI 300
Query: 301 LFFALGVSSDKEI-----------------------------WKDFRRGKRALTFLDNEI 360
LFFALGVSSDKEI WKDFRRGKRALTFLDNEI
Sbjct: 301 LFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEI 360
Query: 361 RKTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKR 420
RKTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKR
Sbjct: 361 RKTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKR 420
Query: 421 FELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTG 480
FELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTG
Sbjct: 421 FELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTG 480
Query: 481 AWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF 540
AWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF
Sbjct: 481 AWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF 540
Query: 541 LSTPDGENCGLIKNLSGTGLVSLNTTKPIIPTLFCCGMENLADNTSTSLCGKYRIFLDGE 600
LSTPDGENCGLIKNLSGTGLVSLNTTKPIIPTLFCCGMENLADNTSTSLCGKYRIFLDGE
Sbjct: 541 LSTPDGENCGLIKNLSGTGLVSLNTTKPIIPTLFCCGMENLADNTSTSLCGKYRIFLDGE 600
Query: 601 WVGVCEDSLSFVTKVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR 660
WVGVCEDSLSFVTKVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR
Sbjct: 601 WVGVCEDSLSFVTKVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR 660
Query: 661 IDKSKGENYTFQSLLDKGIIELVGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLL 720
IDKSKGENYTFQSLLDKGIIELVGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLL
Sbjct: 661 IDKSKGENYTFQSLLDKGIIELVGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLL 720
Query: 721 GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRA-------------TFRTMT 780
GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFR FRTMT
Sbjct: 721 GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMT 780
Query: 781 ADCLGTPGYLSSHTVYSPNP----------------------SSIMVRMLLWQSMFTWVT 840
ADCLGTPGYLSSHT P P S +M R L + MF
Sbjct: 781 ADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEH 840
Query: 841 TRRFITYRSYKAEVDNKESSEKRRKSDDTINFGKTQSKIGRVDSLDDDGFPYIGANLQSG 900
T RSYKAEVDNKESSEKRRKSDDTINFGKTQSKIGRVDSLDDDGFPYIGANLQSG
Sbjct: 841 T------RSYKAEVDNKESSEKRRKSDDTINFGKTQSKIGRVDSLDDDGFPYIGANLQSG 900
Query: 901 DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSM 960
DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSM
Sbjct: 901 DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSM 960
Query: 961 HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSHR---------------CWRFSEI 1020
HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS + +
Sbjct: 961 HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKY 1020
Query: 1021 CNAFLNSSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFM-------------DKV 1080
F SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFM DKV
Sbjct: 1021 ATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKV 1080
Query: 1081 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC 1100
KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC
Sbjct: 1081 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC 1140
BLAST of IVF0009560 vs. ExPASy TrEMBL
Match:
A0A1S3BUT1 (DNA-directed RNA polymerase subunit beta OS=Cucumis melo OX=3656 GN=LOC103493748 PE=3 SV=1)
HSP 1 Score: 2058.9 bits (5333), Expect = 0.0e+00
Identity = 1052/1204 (87.38%), Postives = 1058/1204 (87.87%), Query Frame = 0
Query: 1 MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNINDLGEAFLKDFCK------- 60
MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNINDLGEAFLKDFCK
Sbjct: 1 MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNINDLGEAFLKDFCKKSSMAFF 60
Query: 61 ------NHQINSYNDFIKNGVQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
+HQINSYNDFIKNGVQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD
Sbjct: 61 NQYGLISHQINSYNDFIKNGVQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
Query: 121 KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180
KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD
Sbjct: 121 KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180
Query: 181 KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRGGYFLIKGAEKVNIYCSRA 240
KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRGGYFLIKGAEK+ I
Sbjct: 181 KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRGGYFLIKGAEKIFI-AQEQ 240
Query: 241 ICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWI 300
ICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWI
Sbjct: 241 ICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWI 300
Query: 301 LFFALGVSSDKEI-----------------------------WKDFRRGKRALTFLDNEI 360
LFFALGVSSDKEI WKDFRRGKRALTFLDNEI
Sbjct: 301 LFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEI 360
Query: 361 RKTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKR 420
RKTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKR
Sbjct: 361 RKTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKR 420
Query: 421 FELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTG 480
FELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTG
Sbjct: 421 FELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTG 480
Query: 481 AWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF 540
AWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF
Sbjct: 481 AWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF 540
Query: 541 LSTPDGENCGLIKNLSGTGLVSLNTTKPIIPTLFCCGMENLADNTSTSLCGKYRIFLDGE 600
LSTPDGENCGLIKNLSGTGLVSLNTTKPIIPTLFCCGMENLADNTSTSLCGKYRIFLDGE
Sbjct: 541 LSTPDGENCGLIKNLSGTGLVSLNTTKPIIPTLFCCGMENLADNTSTSLCGKYRIFLDGE 600
Query: 601 WVGVCEDSLSFVTKVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR 660
WVGVCEDSLSFVTKVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR
Sbjct: 601 WVGVCEDSLSFVTKVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR 660
Query: 661 IDKSKGENYTFQSLLDKGIIELVGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLL 720
IDKSKGENYTFQSLLDKGIIELVGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLL
Sbjct: 661 IDKSKGENYTFQSLLDKGIIELVGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLL 720
Query: 721 GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRA-------------TFRTMT 780
GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFR FRTMT
Sbjct: 721 GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMT 780
Query: 781 ADCLGTPGYLSSHTVYSPNP----------------------SSIMVRMLLWQSMFTWVT 840
ADCLGTPGYLSSHT P P S +M R L + MF
Sbjct: 781 ADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEH 840
Query: 841 TRRFITYRSYKAEVDNKESSEKRRKSDDTINFGKTQSKIGRVDSLDDDGFPYIGANLQSG 900
T RSYKAEVDNKESSEKRRKSDDTINFGKTQSKIGRVDSLDDDGFPYIGANLQSG
Sbjct: 841 T------RSYKAEVDNKESSEKRRKSDDTINFGKTQSKIGRVDSLDDDGFPYIGANLQSG 900
Query: 901 DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSM 960
DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSM
Sbjct: 901 DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSM 960
Query: 961 HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSHR---------------CWRFSEI 1020
HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS + +
Sbjct: 961 HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKY 1020
Query: 1021 CNAFLNSSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFM-------------DKV 1080
F SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFM DKV
Sbjct: 1021 ATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKV 1080
Query: 1081 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC 1100
KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC
Sbjct: 1081 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC 1140
BLAST of IVF0009560 vs. ExPASy TrEMBL
Match:
A0A0A0L319 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=Csa_4G651950 PE=3 SV=1)
HSP 1 Score: 2018.8 bits (5229), Expect = 0.0e+00
Identity = 1031/1204 (85.63%), Postives = 1043/1204 (86.63%), Query Frame = 0
Query: 1 MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNINDLGEAFLKDFCK------- 60
MGTSG KDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNI+DLGEAFLKDFCK
Sbjct: 1 MGTSGAKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNIHDLGEAFLKDFCKKSSMAFF 60
Query: 61 ------NHQINSYNDFIKNGVQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
+HQINSYNDFIKNG+QKAFDFFGDILVQPGYDPSKKGDGEWRYA+VKFGKVTLD
Sbjct: 61 NQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKGDGEWRYATVKFGKVTLD 120
Query: 121 KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180
KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD
Sbjct: 121 KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180
Query: 181 KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRGGYFLIKGAEKVNIYCSRA 240
KEPVEGASDNRDVFIGRLPVMVNSDLCWMKD QKRDCEFDRGGYFLIKGAEK+ I
Sbjct: 181 KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDGQKRDCEFDRGGYFLIKGAEKIFI-AQEQ 240
Query: 241 ICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWI 300
ICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWI
Sbjct: 241 ICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWI 300
Query: 301 LFFALGVSSDKEI-----------------------------WKDFRRGKRALTFLDNEI 360
LFFALGVSSDKEI WKDFRRGKRALTFLDNEI
Sbjct: 301 LFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEI 360
Query: 361 RKTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKR 420
RKTSFPPA+KIEDCLNLYLFASLKG KQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKR
Sbjct: 361 RKTSFPPADKIEDCLNLYLFASLKGSKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKR 420
Query: 421 FELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTG 480
FELAAELLERELKVHIAHARRRMEKALQRDLYGDRQV PIEHYLDASIITNGLSRAFSTG
Sbjct: 421 FELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVHPIEHYLDASIITNGLSRAFSTG 480
Query: 481 AWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF 540
AWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF
Sbjct: 481 AWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF 540
Query: 541 LSTPDGENCGLIKNLSGTGLVSLNTTKPIIPTLFCCGMENLADNTSTSLCGKYRIFLDGE 600
LSTPDGENCGLIKNLSGTGLVSLNT K I PTLF CGMENL DNTSTS CGKYRIFLDGE
Sbjct: 541 LSTPDGENCGLIKNLSGTGLVSLNTKKSITPTLFRCGMENLVDNTSTSFCGKYRIFLDGE 600
Query: 601 WVGVCEDSLSFVTKVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR 660
WVGVCEDSLSFVT VRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR
Sbjct: 601 WVGVCEDSLSFVTNVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR 660
Query: 661 IDKSKGENYTFQSLLDKGIIELVGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLL 720
IDKSKGENYTFQSLLDKGIIEL+GTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLL
Sbjct: 661 IDKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLL 720
Query: 721 GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRA-------------TFRTMT 780
GLSCGLVPFANHDHARRALFQSQKHSNQAIGFS TNSNFR FRTMT
Sbjct: 721 GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSPTNSNFRVDTLSHQLHYPQRPLFRTMT 780
Query: 781 ADCLGTPGYLSSHTVYSPNP----------------------SSIMVRMLLWQSMFTWVT 840
ADCLGTPGYLSSH P P S +M R L + MF
Sbjct: 781 ADCLGTPGYLSSHAGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMF---- 840
Query: 841 TRRFITYRSYKAEVDNKESSEKRRKSDDTINFGKTQSKIGRVDSLDDDGFPYIGANLQSG 900
R RSYKAEVDNKESSEKRRKSDD INFGKTQSKIGRVDSLDDDGFPYIGANLQSG
Sbjct: 841 --RSEHIRSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSG 900
Query: 901 DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSM 960
DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSM
Sbjct: 901 DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSM 960
Query: 961 HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSHR---------------CWRFSEI 1020
HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS + +
Sbjct: 961 HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKY 1020
Query: 1021 CNAFLNSSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFM-------------DKV 1080
F SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFM DKV
Sbjct: 1021 ATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKV 1080
Query: 1081 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC 1100
KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC
Sbjct: 1081 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC 1140
BLAST of IVF0009560 vs. ExPASy TrEMBL
Match:
A0A6J1FHZ2 (DNA-directed RNA polymerase subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111445938 PE=3 SV=1)
HSP 1 Score: 1930.2 bits (4999), Expect = 0.0e+00
Identity = 981/1204 (81.48%), Postives = 1029/1204 (85.47%), Query Frame = 0
Query: 1 MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNINDLGEAFLKDFCK------- 60
MGTSG KDDIEMNSE EDLSPG D+DTDDDD YSEPVNI+DLGE FLKDFCK
Sbjct: 1 MGTSGAKDDIEMNSEPEDLSPGTDMDTDDDD--YSEPVNIHDLGETFLKDFCKKSSMAFF 60
Query: 61 ------NHQINSYNDFIKNGVQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
+HQ+NSYNDFIK+G+QK+FD+FG+I+VQPGYDPSKKGDGEWRYASVKFGKVTLD
Sbjct: 61 NEYGLISHQLNSYNDFIKSGIQKSFDYFGEIVVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
Query: 121 KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180
KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMK+NI++E+YTQ+LV SDKFKTG+DQYVD
Sbjct: 121 KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKMNINVEVYTQRLVRSDKFKTGQDQYVD 180
Query: 181 KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRGGYFLIKGAEKVNIYCSRA 240
K+ + + DNRD+FIGRLPVMVNSDLCWMKD+QKRDCEFD GGYFLIKGAEK+ I
Sbjct: 181 KDLL--SQDNRDIFIGRLPVMVNSDLCWMKDDQKRDCEFDHGGYFLIKGAEKIFI-AQEQ 240
Query: 241 ICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWI 300
ICLRRLWISN QGWTVAYRSEVKRNRLIIRLVENSKSE+LKSKEKVLNVYFLSTE+PVWI
Sbjct: 241 ICLRRLWISNNQGWTVAYRSEVKRNRLIIRLVENSKSEELKSKEKVLNVYFLSTEIPVWI 300
Query: 301 LFFALGVSSDKEI-----------------------------WKDFRRGKRALTFLDNEI 360
LFFALGVSSD+EI WKDFRRGKRAL FL+NE+
Sbjct: 301 LFFALGVSSDREIVDLIDFGREDPTVLNILFASVRVVDNDDKWKDFRRGKRALNFLENEV 360
Query: 361 RKTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKR 420
+KTSFPPAEKIEDCLNLYLFASLKGLKQKC FLGYMVKCLLQAYTGRRKCDNRDDFRNKR
Sbjct: 361 KKTSFPPAEKIEDCLNLYLFASLKGLKQKCRFLGYMVKCLLQAYTGRRKCDNRDDFRNKR 420
Query: 421 FELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTG 480
FELA ELLERE+KVHIAHARRRMEKALQRDLYGDR VRPIEHY DASIITNGLSRAFSTG
Sbjct: 421 FELAGELLEREIKVHIAHARRRMEKALQRDLYGDRDVRPIEHYFDASIITNGLSRAFSTG 480
Query: 481 AWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF 540
AWAH+FKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF
Sbjct: 481 AWAHSFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF 540
Query: 541 LSTPDGENCGLIKNLSGTGLVSLNTTKPIIPTLFCCGMENLADNTSTSLCGKYRIFLDGE 600
LSTPDGENCGLIKNLS TGLVSLNT KP++PTLF CGMEN+ D+TSTSL GK+RIFL+GE
Sbjct: 541 LSTPDGENCGLIKNLSITGLVSLNTLKPVVPTLFRCGMENVVDDTSTSLSGKHRIFLNGE 600
Query: 601 WVGVCEDSLSFVTKVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR 660
WVGVCEDSLSFVTKVRRKRRRN LHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR
Sbjct: 601 WVGVCEDSLSFVTKVRRKRRRNLLLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR 660
Query: 661 IDKSKGENYTFQSLLDKGIIELVGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLL 720
IDKSKGE+YTFQSLLDKGIIEL+GTEEEEDCR AWSIKHL ED+GT+KY+HCELD SFLL
Sbjct: 661 IDKSKGESYTFQSLLDKGIIELIGTEEEEDCRTAWSIKHLTEDQGTSKYTHCELDTSFLL 720
Query: 721 GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRA-------------TFRTMT 780
GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFR FRTMT
Sbjct: 721 GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMT 780
Query: 781 ADCLGTPGYLSSHTVYSPNP----------------------SSIMVRMLLWQSMFTWVT 840
ADCLGTPGYLSSHT P P S +M R L + MF
Sbjct: 781 ADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEH 840
Query: 841 TRRFITYRSYKAEVDNKESSEKRRKSDDTINFGKTQSKIGRVDSLDDDGFPYIGANLQSG 900
T RSYKAEVDNKESSEKRRKSDD INFGKTQSKIGRVDSLDDDGFPYIGANLQSG
Sbjct: 841 T------RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSG 900
Query: 901 DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSM 960
DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKN+AVVSLRQVRSPCLGDKFSSM
Sbjct: 901 DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNFAVVSLRQVRSPCLGDKFSSM 960
Query: 961 HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSHR---------------CWRFSEI 1020
HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS + +
Sbjct: 961 HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIASGGSLKY 1020
Query: 1021 CNAFLNSSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFM-------------DKV 1080
F SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFM DKV
Sbjct: 1021 ATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKV 1080
Query: 1081 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC 1100
KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC
Sbjct: 1081 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC 1140
BLAST of IVF0009560 vs. ExPASy TrEMBL
Match:
A0A6J1IXN3 (DNA-directed RNA polymerase subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111480863 PE=3 SV=1)
HSP 1 Score: 1925.2 bits (4986), Expect = 0.0e+00
Identity = 978/1204 (81.23%), Postives = 1028/1204 (85.38%), Query Frame = 0
Query: 1 MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNINDLGEAFLKDFCK------- 60
MGTSG KDDIEMNSE EDLSPG D+DTDDDD YSEPVNI+DLGE FLKDFCK
Sbjct: 1 MGTSGAKDDIEMNSEPEDLSPGTDMDTDDDD--YSEPVNIHDLGEVFLKDFCKKSSMAFF 60
Query: 61 ------NHQINSYNDFIKNGVQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
+HQ+NSYNDFIK+G+QK+FD+FG+I+VQPGYDPSKKGDGEWRYASVKFGKVTLD
Sbjct: 61 DEYGLISHQLNSYNDFIKSGIQKSFDYFGEIVVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
Query: 121 KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180
KPKFWGGAASGKEYN+LPRHARLQNMTYSSRMK+NI++E+YTQ+LV SDKFKTG+DQYVD
Sbjct: 121 KPKFWGGAASGKEYNLLPRHARLQNMTYSSRMKMNINVEVYTQRLVRSDKFKTGQDQYVD 180
Query: 181 KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRGGYFLIKGAEKVNIYCSRA 240
K+ + + DNRD+FIGRLPVMVNSDLCWMKD+QKRDCEFD GGYFLIKGAEK+ I
Sbjct: 181 KDLL--SQDNRDIFIGRLPVMVNSDLCWMKDDQKRDCEFDHGGYFLIKGAEKIFI-AQEQ 240
Query: 241 ICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWI 300
ICLRRLWISN QGWTVAYRSEVKRNRLIIRLVENSKSE+LKSKEKVLNVYFLSTE+PVWI
Sbjct: 241 ICLRRLWISNNQGWTVAYRSEVKRNRLIIRLVENSKSEELKSKEKVLNVYFLSTEIPVWI 300
Query: 301 LFFALGVSSDKEI-----------------------------WKDFRRGKRALTFLDNEI 360
LFFALGVSSD+EI WKDFRRGKRAL FL+NE+
Sbjct: 301 LFFALGVSSDREIVDLIDFGREDPTVLNILFASVRVVDNDDKWKDFRRGKRALNFLENEV 360
Query: 361 RKTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKR 420
+KTSFPPAEKIEDCLNLYLFASLKGLKQKC FLGYMVKCLLQAYTGRRKCDNRDDFRNKR
Sbjct: 361 KKTSFPPAEKIEDCLNLYLFASLKGLKQKCRFLGYMVKCLLQAYTGRRKCDNRDDFRNKR 420
Query: 421 FELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTG 480
FELA ELLERE+KVHIAHARRRMEKALQRDLYGDR VRPIEHY DASIITNGLSRAFSTG
Sbjct: 421 FELAGELLEREIKVHIAHARRRMEKALQRDLYGDRDVRPIEHYFDASIITNGLSRAFSTG 480
Query: 481 AWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF 540
AWAH+FKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF
Sbjct: 481 AWAHSFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF 540
Query: 541 LSTPDGENCGLIKNLSGTGLVSLNTTKPIIPTLFCCGMENLADNTSTSLCGKYRIFLDGE 600
LSTPDGENCGLIKNLS TGLVSLNT KP++PTLF CGMEN+ D+TSTSL GK++IFL+GE
Sbjct: 541 LSTPDGENCGLIKNLSITGLVSLNTLKPVVPTLFRCGMENVVDDTSTSLSGKHKIFLNGE 600
Query: 601 WVGVCEDSLSFVTKVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR 660
WVGVCEDSLSFVTKVR KRRRN LHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR
Sbjct: 601 WVGVCEDSLSFVTKVRLKRRRNLLLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR 660
Query: 661 IDKSKGENYTFQSLLDKGIIELVGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLL 720
IDKSKGE+YTFQSLLDKGIIEL+GTEEEEDCR AWSIKHL ED+GT+KY+HCELD SFLL
Sbjct: 661 IDKSKGESYTFQSLLDKGIIELIGTEEEEDCRTAWSIKHLTEDQGTSKYTHCELDTSFLL 720
Query: 721 GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRA-------------TFRTMT 780
GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFR FRTMT
Sbjct: 721 GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMT 780
Query: 781 ADCLGTPGYLSSHTVYSPNP----------------------SSIMVRMLLWQSMFTWVT 840
ADCLGTPGYLSSHT P P S +M R L + MF
Sbjct: 781 ADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEH 840
Query: 841 TRRFITYRSYKAEVDNKESSEKRRKSDDTINFGKTQSKIGRVDSLDDDGFPYIGANLQSG 900
T RSYKAEVDNKESSEKRRKSDD INFGKTQSKIGRVDSLDDDGFPYIGANLQSG
Sbjct: 841 T------RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSG 900
Query: 901 DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSM 960
DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKN+AVVSLRQVRSPCLGDKFSSM
Sbjct: 901 DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNFAVVSLRQVRSPCLGDKFSSM 960
Query: 961 HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSHR---------------CWRFSEI 1020
HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS + +
Sbjct: 961 HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIASGGSLKY 1020
Query: 1021 CNAFLNSSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFM-------------DKV 1080
F SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFM DKV
Sbjct: 1021 ATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKV 1080
Query: 1081 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC 1100
KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC
Sbjct: 1081 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC 1140
BLAST of IVF0009560 vs. NCBI nr
Match:
XP_008452849.1 (PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Cucumis melo] >KAA0064582.1 DNA-directed RNA polymerases IV and V subunit 2-like [Cucumis melo var. makuwa] >TYK20008.1 DNA-directed RNA polymerases IV and V subunit 2-like [Cucumis melo var. makuwa])
HSP 1 Score: 2044 bits (5296), Expect = 0.0
Identity = 1052/1204 (87.38%), Postives = 1058/1204 (87.87%), Query Frame = 0
Query: 1 MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNINDLGEAFLKDFCK------- 60
MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNINDLGEAFLKDFCK
Sbjct: 1 MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNINDLGEAFLKDFCKKSSMAFF 60
Query: 61 ------NHQINSYNDFIKNGVQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
+HQINSYNDFIKNGVQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD
Sbjct: 61 NQYGLISHQINSYNDFIKNGVQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
Query: 121 KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180
KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD
Sbjct: 121 KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180
Query: 181 KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRGGYFLIKGAEKVNIYCSRA 240
KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRGGYFLIKGAEK+ I
Sbjct: 181 KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRGGYFLIKGAEKIFI-AQEQ 240
Query: 241 ICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWI 300
ICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWI
Sbjct: 241 ICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWI 300
Query: 301 LFFALGVSSDKEI-----------------------------WKDFRRGKRALTFLDNEI 360
LFFALGVSSDKEI WKDFRRGKRALTFLDNEI
Sbjct: 301 LFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEI 360
Query: 361 RKTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKR 420
RKTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKR
Sbjct: 361 RKTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKR 420
Query: 421 FELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTG 480
FELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTG
Sbjct: 421 FELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTG 480
Query: 481 AWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF 540
AWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF
Sbjct: 481 AWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF 540
Query: 541 LSTPDGENCGLIKNLSGTGLVSLNTTKPIIPTLFCCGMENLADNTSTSLCGKYRIFLDGE 600
LSTPDGENCGLIKNLSGTGLVSLNTTKPIIPTLFCCGMENLADNTSTSLCGKYRIFLDGE
Sbjct: 541 LSTPDGENCGLIKNLSGTGLVSLNTTKPIIPTLFCCGMENLADNTSTSLCGKYRIFLDGE 600
Query: 601 WVGVCEDSLSFVTKVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR 660
WVGVCEDSLSFVTKVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR
Sbjct: 601 WVGVCEDSLSFVTKVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR 660
Query: 661 IDKSKGENYTFQSLLDKGIIELVGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLL 720
IDKSKGENYTFQSLLDKGIIELVGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLL
Sbjct: 661 IDKSKGENYTFQSLLDKGIIELVGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLL 720
Query: 721 GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRAT-------------FRTMT 780
GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFR FRTMT
Sbjct: 721 GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMT 780
Query: 781 ADCLGTPGYLSSHTVYSPNP----------------------SSIMVRMLLWQSMFTWVT 840
ADCLGTPGYLSSHT P P S +M R L + MF
Sbjct: 781 ADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEH 840
Query: 841 TRRFITYRSYKAEVDNKESSEKRRKSDDTINFGKTQSKIGRVDSLDDDGFPYIGANLQSG 900
TR SYKAEVDNKESSEKRRKSDDTINFGKTQSKIGRVDSLDDDGFPYIGANLQSG
Sbjct: 841 TR------SYKAEVDNKESSEKRRKSDDTINFGKTQSKIGRVDSLDDDGFPYIGANLQSG 900
Query: 901 DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSM 960
DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSM
Sbjct: 901 DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSM 960
Query: 961 HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSHR---------------CWRFSEI 1020
HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS + +
Sbjct: 961 HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKY 1020
Query: 1021 CNAFLNSSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFM-------------DKV 1080
F SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFM DKV
Sbjct: 1021 ATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKV 1080
Query: 1081 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC 1099
KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC
Sbjct: 1081 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC 1140
BLAST of IVF0009560 vs. NCBI nr
Match:
XP_031740252.1 (DNA-directed RNA polymerases IV and V subunit 2 [Cucumis sativus] >KGN55429.1 hypothetical protein Csa_012655 [Cucumis sativus])
HSP 1 Score: 2004 bits (5191), Expect = 0.0
Identity = 1031/1204 (85.63%), Postives = 1043/1204 (86.63%), Query Frame = 0
Query: 1 MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNINDLGEAFLKDFCK------- 60
MGTSG KDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNI+DLGEAFLKDFCK
Sbjct: 1 MGTSGAKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNIHDLGEAFLKDFCKKSSMAFF 60
Query: 61 ------NHQINSYNDFIKNGVQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
+HQINSYNDFIKNG+QKAFDFFGDILVQPGYDPSKKGDGEWRYA+VKFGKVTLD
Sbjct: 61 NQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKGDGEWRYATVKFGKVTLD 120
Query: 121 KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180
KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD
Sbjct: 121 KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180
Query: 181 KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRGGYFLIKGAEKVNIYCSRA 240
KEPVEGASDNRDVFIGRLPVMVNSDLCWMKD QKRDCEFDRGGYFLIKGAEK+ I
Sbjct: 181 KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDGQKRDCEFDRGGYFLIKGAEKIFI-AQEQ 240
Query: 241 ICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWI 300
ICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWI
Sbjct: 241 ICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWI 300
Query: 301 LFFALGVSSDKEI-----------------------------WKDFRRGKRALTFLDNEI 360
LFFALGVSSDKEI WKDFRRGKRALTFLDNEI
Sbjct: 301 LFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEI 360
Query: 361 RKTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKR 420
RKTSFPPA+KIEDCLNLYLFASLKG KQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKR
Sbjct: 361 RKTSFPPADKIEDCLNLYLFASLKGSKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKR 420
Query: 421 FELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTG 480
FELAAELLERELKVHIAHARRRMEKALQRDLYGDRQV PIEHYLDASIITNGLSRAFSTG
Sbjct: 421 FELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVHPIEHYLDASIITNGLSRAFSTG 480
Query: 481 AWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF 540
AWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF
Sbjct: 481 AWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF 540
Query: 541 LSTPDGENCGLIKNLSGTGLVSLNTTKPIIPTLFCCGMENLADNTSTSLCGKYRIFLDGE 600
LSTPDGENCGLIKNLSGTGLVSLNT K I PTLF CGMENL DNTSTS CGKYRIFLDGE
Sbjct: 541 LSTPDGENCGLIKNLSGTGLVSLNTKKSITPTLFRCGMENLVDNTSTSFCGKYRIFLDGE 600
Query: 601 WVGVCEDSLSFVTKVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR 660
WVGVCEDSLSFVT VRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR
Sbjct: 601 WVGVCEDSLSFVTNVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR 660
Query: 661 IDKSKGENYTFQSLLDKGIIELVGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLL 720
IDKSKGENYTFQSLLDKGIIEL+GTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLL
Sbjct: 661 IDKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLL 720
Query: 721 GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRAT-------------FRTMT 780
GLSCGLVPFANHDHARRALFQSQKHSNQAIGFS TNSNFR FRTMT
Sbjct: 721 GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSPTNSNFRVDTLSHQLHYPQRPLFRTMT 780
Query: 781 ADCLGTPGYLSSHTVYSPNP----------------------SSIMVRMLLWQSMFTWVT 840
ADCLGTPGYLSSH P P S +M R L + MF
Sbjct: 781 ADCLGTPGYLSSHAGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMF---- 840
Query: 841 TRRFITYRSYKAEVDNKESSEKRRKSDDTINFGKTQSKIGRVDSLDDDGFPYIGANLQSG 900
R RSYKAEVDNKESSEKRRKSDD INFGKTQSKIGRVDSLDDDGFPYIGANLQSG
Sbjct: 841 --RSEHIRSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSG 900
Query: 901 DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSM 960
DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSM
Sbjct: 901 DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSM 960
Query: 961 HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSHR---------------CWRFSEI 1020
HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS + +
Sbjct: 961 HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKY 1020
Query: 1021 CNAFLNSSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFM-------------DKV 1080
F SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFM DKV
Sbjct: 1021 ATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKV 1080
Query: 1081 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC 1099
KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC
Sbjct: 1081 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC 1140
BLAST of IVF0009560 vs. NCBI nr
Match:
XP_038897771.1 (DNA-directed RNA polymerases IV and V subunit 2-like [Benincasa hispida])
HSP 1 Score: 1960 bits (5078), Expect = 0.0
Identity = 1008/1204 (83.72%), Postives = 1038/1204 (86.21%), Query Frame = 0
Query: 1 MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNINDLGEAFLKDFCK------- 60
MGTSGTKDDIEMNSEGEDLSPG D+DTDDD DYYSEPVNI DLGEAFLKDFCK
Sbjct: 1 MGTSGTKDDIEMNSEGEDLSPGTDMDTDDD-DYYSEPVNIRDLGEAFLKDFCKKSSMAFF 60
Query: 61 ------NHQINSYNDFIKNGVQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
+HQINSYNDFIK+G+QKAFD+FG+ILVQPGYDPSKKGDGEWRYASVKFGKVTLD
Sbjct: 61 NQYGLISHQINSYNDFIKSGIQKAFDYFGEILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
Query: 121 KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180
KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLE+YTQ+LVSSDKFKTGKD+YVD
Sbjct: 121 KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEVYTQRLVSSDKFKTGKDKYVD 180
Query: 181 KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRGGYFLIKGAEKVNIYCSRA 240
KE V+ DNRDVFIGRLPVMVNSDLCWMK+EQKRDCEFD GGYFLIKGAEK+ I
Sbjct: 181 KEHVK--EDNRDVFIGRLPVMVNSDLCWMKEEQKRDCEFDHGGYFLIKGAEKIFI-AQEQ 240
Query: 241 ICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWI 300
ICLRRLWISN+QGWTVAYRSEVKRNRLIIRLVENSKSE+LKSKEKVLNVYFLSTEVPVWI
Sbjct: 241 ICLRRLWISNIQGWTVAYRSEVKRNRLIIRLVENSKSEELKSKEKVLNVYFLSTEVPVWI 300
Query: 301 LFFALGVSSDKEI-----------------------------WKDFRRGKRALTFLDNEI 360
LFFALGVSSDKEI WKDFRRGKRAL FLDNE+
Sbjct: 301 LFFALGVSSDKEIVDLIDYGRDDPSVLNILFASVREVDNDDKWKDFRRGKRALNFLDNEV 360
Query: 361 RKTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKR 420
RKTSFPPAEKIEDCLNLYLFASLKGLKQKC FLGYMVKCLLQAYTGRRKCDNRDDFRNKR
Sbjct: 361 RKTSFPPAEKIEDCLNLYLFASLKGLKQKCRFLGYMVKCLLQAYTGRRKCDNRDDFRNKR 420
Query: 421 FELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTG 480
FELA ELLERE+KVHIAHARRRMEKALQRDLYGDR VRPIEHYLDASIITNGLSRAFSTG
Sbjct: 421 FELAGELLEREIKVHIAHARRRMEKALQRDLYGDRDVRPIEHYLDASIITNGLSRAFSTG 480
Query: 481 AWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF 540
AWAH+FKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF
Sbjct: 481 AWAHSFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF 540
Query: 541 LSTPDGENCGLIKNLSGTGLVSLNTTKPIIPTLFCCGMENLADNTSTSLCGKYRIFLDGE 600
+STPDGENCGLIKNLS TGLVSLNT KPI+PTLF CGMENL D+TSTSL GKY+IFLDGE
Sbjct: 541 ISTPDGENCGLIKNLSVTGLVSLNTLKPIVPTLFRCGMENLVDDTSTSLSGKYKIFLDGE 600
Query: 601 WVGVCEDSLSFVTKVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR 660
WVGVCEDSLSFVTKVRRKRRRNP LHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR
Sbjct: 601 WVGVCEDSLSFVTKVRRKRRRNPLLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR 660
Query: 661 IDKSKGENYTFQSLLDKGIIELVGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLL 720
IDKSKGENYTFQSLLD+GIIEL+GTEEEEDCR AWSIKHLMEDEGTTKYSHCELDMSFLL
Sbjct: 661 IDKSKGENYTFQSLLDRGIIELIGTEEEEDCRTAWSIKHLMEDEGTTKYSHCELDMSFLL 720
Query: 721 GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRAT-------------FRTMT 780
GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFR FRTMT
Sbjct: 721 GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMT 780
Query: 781 ADCLGTPGYLSSHTVYSPNP----------------------SSIMVRMLLWQSMFTWVT 840
ADCLGTPGYLSSHT P P S +M R L + MF
Sbjct: 781 ADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMF---- 840
Query: 841 TRRFITYRSYKAEVDNKESSEKRRKSDDTINFGKTQSKIGRVDSLDDDGFPYIGANLQSG 900
R RSYKAEVDNKESSEKRRKSDD INFGKTQSKIGRVDSLD+DGFPYIGANLQSG
Sbjct: 841 --RSEHIRSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDEDGFPYIGANLQSG 900
Query: 901 DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSM 960
DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSM
Sbjct: 901 DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSM 960
Query: 961 HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSHRC---------------WRFSEI 1020
HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS + +
Sbjct: 961 HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIASGGSLKY 1020
Query: 1021 CNAFLNSSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFM-------------DKV 1080
F SVDAIT+QLHRAGFSRWGSERVYNGRTGEMM+SLIFM DKV
Sbjct: 1021 ATPFSTPSVDAITEQLHRAGFSRWGSERVYNGRTGEMMQSLIFMGPTFYQRLIHMAEDKV 1080
Query: 1081 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC 1099
KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC
Sbjct: 1081 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC 1140
BLAST of IVF0009560 vs. NCBI nr
Match:
KAG7037651.1 (DNA-directed RNA polymerases IV and V subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 1917 bits (4967), Expect = 0.0
Identity = 982/1204 (81.56%), Postives = 1030/1204 (85.55%), Query Frame = 0
Query: 1 MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNINDLGEAFLKDFCK------- 60
MGTSG KDDIEMNSE EDLSPG D+DTDDDD YSEPVNI+DLGE FLKDFCK
Sbjct: 1 MGTSGAKDDIEMNSEPEDLSPGTDMDTDDDD--YSEPVNIHDLGETFLKDFCKKSSMAFF 60
Query: 61 ------NHQINSYNDFIKNGVQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
+HQ+NSYNDFIK+G+QK+FD+FG+I+VQPGYDPSKKGDGEWRYASVKFGKVTLD
Sbjct: 61 NEYGLISHQLNSYNDFIKSGIQKSFDYFGEIVVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
Query: 121 KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180
KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMK+NI++E+YTQ+LV SDKFKTG+DQYVD
Sbjct: 121 KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKMNINVEVYTQRLVRSDKFKTGQDQYVD 180
Query: 181 KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRGGYFLIKGAEKVNIYCSRA 240
K+ + + DNRD+FIGRLPVMVNSDLCWMKD+QKRDCEFDRGGYFLIKGAEK+ I
Sbjct: 181 KDLL--SQDNRDIFIGRLPVMVNSDLCWMKDDQKRDCEFDRGGYFLIKGAEKIFI-AQEQ 240
Query: 241 ICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWI 300
ICLRRLWISN QGWTVAYRSEVKRNRLIIRLVENSKSE+LKSKEKVLNVYFLSTE+PVWI
Sbjct: 241 ICLRRLWISNNQGWTVAYRSEVKRNRLIIRLVENSKSEELKSKEKVLNVYFLSTEIPVWI 300
Query: 301 LFFALGVSSDKEI-----------------------------WKDFRRGKRALTFLDNEI 360
LFFALGVSSD+EI WKDFRRGKRAL FL+NE+
Sbjct: 301 LFFALGVSSDREIVDLIDFGREDPTVLNILFASVRVVDNDDKWKDFRRGKRALNFLENEV 360
Query: 361 RKTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKR 420
+KTSFPPAEKIEDCLNLYLFASLKGLKQKC FLGYMVKCLLQAYTGRRKCDNRDDFRNKR
Sbjct: 361 KKTSFPPAEKIEDCLNLYLFASLKGLKQKCRFLGYMVKCLLQAYTGRRKCDNRDDFRNKR 420
Query: 421 FELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTG 480
FELA ELLERE+KVHIAHARRRMEKALQRDLYGDR VRPIEHY DASIITNGLSRAFSTG
Sbjct: 421 FELAGELLEREIKVHIAHARRRMEKALQRDLYGDRDVRPIEHYFDASIITNGLSRAFSTG 480
Query: 481 AWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF 540
AWAH+FKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF
Sbjct: 481 AWAHSFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF 540
Query: 541 LSTPDGENCGLIKNLSGTGLVSLNTTKPIIPTLFCCGMENLADNTSTSLCGKYRIFLDGE 600
LSTPDGENCGLIKNLS TGLVSLNT KP++PTLF CGMEN+ D+TSTSL GK+RIFL+GE
Sbjct: 541 LSTPDGENCGLIKNLSITGLVSLNTLKPVVPTLFRCGMENVVDDTSTSLSGKHRIFLNGE 600
Query: 601 WVGVCEDSLSFVTKVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR 660
WVGVCEDSLSFVTKVRRKRRRN LHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR
Sbjct: 601 WVGVCEDSLSFVTKVRRKRRRNLLLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR 660
Query: 661 IDKSKGENYTFQSLLDKGIIELVGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLL 720
IDKSKGE+YTFQSLLDKGIIEL+GTEEEEDCR AWSIKHL ED+GT+KY+HCELD SFLL
Sbjct: 661 IDKSKGESYTFQSLLDKGIIELIGTEEEEDCRTAWSIKHLTEDQGTSKYTHCELDTSFLL 720
Query: 721 GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRAT-------------FRTMT 780
GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFR FRTMT
Sbjct: 721 GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMT 780
Query: 781 ADCLGTPGYLSSHTVYSPNP----------------------SSIMVRMLLWQSMFTWVT 840
ADCLGTPGYLSSHT P P S +M R L + MF
Sbjct: 781 ADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEH 840
Query: 841 TRRFITYRSYKAEVDNKESSEKRRKSDDTINFGKTQSKIGRVDSLDDDGFPYIGANLQSG 900
TR SYKAEVDNKESSEKRRKSDD INFGKTQSKIGRVDSLDDDGFPYIGANLQSG
Sbjct: 841 TR------SYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSG 900
Query: 901 DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSM 960
DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKN+AVVSLRQVRSPCLGDKFSSM
Sbjct: 901 DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNFAVVSLRQVRSPCLGDKFSSM 960
Query: 961 HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSHRC---------------WRFSEI 1020
HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS + +
Sbjct: 961 HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIASGGSLKY 1020
Query: 1021 CNAFLNSSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFM-------------DKV 1080
F SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFM DKV
Sbjct: 1021 ATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKV 1080
Query: 1081 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC 1099
KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC
Sbjct: 1081 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC 1140
BLAST of IVF0009560 vs. NCBI nr
Match:
XP_023524029.1 (DNA-directed RNA polymerases IV and V subunit 2-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 1916 bits (4963), Expect = 0.0
Identity = 981/1204 (81.48%), Postives = 1029/1204 (85.47%), Query Frame = 0
Query: 1 MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNINDLGEAFLKDFCK------- 60
MGTSG KDDIEMNSE EDLSPG D+DTDDDD YSEPVNI+DLGE FLKDFCK
Sbjct: 1 MGTSGAKDDIEMNSEPEDLSPGTDMDTDDDD--YSEPVNIHDLGETFLKDFCKKSSMAFF 60
Query: 61 ------NHQINSYNDFIKNGVQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
+HQ+NSYNDFIK+G+QK+FD+FG+I+VQPGYDPSKKGDGEWRYASVKFGKVTLD
Sbjct: 61 NEYGLISHQLNSYNDFIKSGIQKSFDYFGEIVVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
Query: 121 KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180
KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMK+NI++E+YTQ+LV SDKFKTG+DQYVD
Sbjct: 121 KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKMNINVEVYTQRLVRSDKFKTGQDQYVD 180
Query: 181 KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRGGYFLIKGAEKVNIYCSRA 240
K+ + + DNRD+FIGRLPVMVNSDLCWMKD+QKRDCEFD GGYFLIKGAEK+ I
Sbjct: 181 KDLL--SQDNRDIFIGRLPVMVNSDLCWMKDDQKRDCEFDHGGYFLIKGAEKIFI-AQEQ 240
Query: 241 ICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWI 300
ICLRRLWISN QGWTVAYRSEVKRNRLIIRLVENSKSE+LKSKEKVLNVYFLSTE+PVWI
Sbjct: 241 ICLRRLWISNNQGWTVAYRSEVKRNRLIIRLVENSKSEELKSKEKVLNVYFLSTEIPVWI 300
Query: 301 LFFALGVSSDKEI-----------------------------WKDFRRGKRALTFLDNEI 360
LFFALGVSSD+EI WKDFRRGKRAL FL+NE+
Sbjct: 301 LFFALGVSSDREIVDLIDFGREDPTVLNILFASVRVVDNDDKWKDFRRGKRALNFLENEV 360
Query: 361 RKTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKR 420
+KTSFPPAEKIEDCLNLYLFASLKGLKQKC FLGYMVKCLLQAYTGRRKCDNRDDFRNKR
Sbjct: 361 KKTSFPPAEKIEDCLNLYLFASLKGLKQKCRFLGYMVKCLLQAYTGRRKCDNRDDFRNKR 420
Query: 421 FELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTG 480
FELA ELLERE+KVHIAHARRRMEKALQRDLYGDR VRPIEHY DASIITNGLSRAFSTG
Sbjct: 421 FELAGELLEREIKVHIAHARRRMEKALQRDLYGDRDVRPIEHYFDASIITNGLSRAFSTG 480
Query: 481 AWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF 540
AWAH+FKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF
Sbjct: 481 AWAHSFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF 540
Query: 541 LSTPDGENCGLIKNLSGTGLVSLNTTKPIIPTLFCCGMENLADNTSTSLCGKYRIFLDGE 600
LSTPDGENCGLIKNLS TGLVSLNT KP++PTLF CGMEN+ D+TSTSL GK+RIFL+GE
Sbjct: 541 LSTPDGENCGLIKNLSITGLVSLNTLKPVVPTLFRCGMENMVDDTSTSLSGKHRIFLNGE 600
Query: 601 WVGVCEDSLSFVTKVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR 660
WVGVCEDSLSFVTKVRRKRRRN LHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR
Sbjct: 601 WVGVCEDSLSFVTKVRRKRRRNLLLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNR 660
Query: 661 IDKSKGENYTFQSLLDKGIIELVGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLL 720
IDKSKGE+YTFQSLLDKGIIEL+GTEEEEDCR AWSIKHL ED+GT+KY+HCELD SFLL
Sbjct: 661 IDKSKGESYTFQSLLDKGIIELIGTEEEEDCRTAWSIKHLTEDQGTSKYTHCELDTSFLL 720
Query: 721 GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRAT-------------FRTMT 780
GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFR FRTMT
Sbjct: 721 GLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMT 780
Query: 781 ADCLGTPGYLSSHTVYSPNP----------------------SSIMVRMLLWQSMFTWVT 840
ADCLGTPGYLSSHT P P S +M R L + MF
Sbjct: 781 ADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEH 840
Query: 841 TRRFITYRSYKAEVDNKESSEKRRKSDDTINFGKTQSKIGRVDSLDDDGFPYIGANLQSG 900
TR SYKAEVDNKESSEKRRKSDD INFGKTQSKIGRVDSLDDDGFPYIGANLQSG
Sbjct: 841 TR------SYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSG 900
Query: 901 DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSM 960
DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKN+AVVSLRQVRSPCLGDKFSSM
Sbjct: 901 DIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNFAVVSLRQVRSPCLGDKFSSM 960
Query: 961 HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSHRC---------------WRFSEI 1020
HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS + +
Sbjct: 961 HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIASGGSLKY 1020
Query: 1021 CNAFLNSSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFM-------------DKV 1080
F SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFM DKV
Sbjct: 1021 ATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKV 1080
Query: 1081 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC 1099
KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC
Sbjct: 1081 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC 1140
BLAST of IVF0009560 vs. TAIR 10
Match:
AT3G23780.1 (nuclear RNA polymerase D2A )
HSP 1 Score: 1388.6 bits (3593), Expect = 0.0e+00
Identity = 698/1187 (58.80%), Postives = 865/1187 (72.87%), Query Frame = 0
Query: 21 PGMDLDTDDDDDYYSE--PVNINDLGEAFLKDFCK-------------NHQINSYNDFIK 80
P MD+D D +++ + +N+++LGE FL+ FCK +HQ+NSYN FI+
Sbjct: 2 PDMDIDVKDLEEFEATTGEINLSELGEGFLQSFCKKAATSFFDKYGLISHQLNSYNYFIE 61
Query: 81 NGVQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYNMLP 140
+G+Q F FG++LV+P +D KK D +WRYA+VKFG+VT++KP F+ + KE LP
Sbjct: 62 HGLQNVFQSFGEMLVEPSFDVVKKKDNDWRYATVKFGEVTVEKPTFF---SDDKELEFLP 121
Query: 141 RHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRL 200
HARLQNMTYS+R+K+N+ +E++ +V SDKFKTG+D YV+K+ ++ +D+ IG +
Sbjct: 122 WHARLQNMTYSARIKVNVQVEVFKNTVVKSDKFKTGQDNYVEKKILD--VKKQDILIGSI 181
Query: 201 PVMVNSDLCWMKDE-----QKRDCEFDRGGYFLIKGAEKVNIYCSRAICLRRLWISNVQG 260
PVMV S LC ++ +K DC FD+GGYF+IKGAEKV I +C +RLWISN
Sbjct: 182 PVMVKSILCKTSEKGKENCKKGDCAFDQGGYFVIKGAEKVFI-AQEQMCTKRLWISN-SP 241
Query: 261 WTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWILFFALGVSSDKE- 320
WTV++RSE KRNR I+RL EN K+ED K +EKVL VYFLSTE+PVW+LFFALGVSSDKE
Sbjct: 242 WTVSFRSENKRNRFIVRLSENEKAEDYKRREKVLTVYFLSTEIPVWLLFFALGVSSDKEA 301
Query: 321 --------------------------IWKDFRRGKRALTFLDNEIRKTSFPPAEKIEDCL 380
+ + FR G ALT+++ +I+ T FPPAE +++CL
Sbjct: 302 MDLIAFDGDDASITNSLIASIHVADAVCEAFRCGNNALTYVEQQIKSTKFPPAESVDECL 361
Query: 381 NLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVH 440
+LYLF L+ LK+K FLGYMVKCLL +Y G+RKC+NRD FRNKR ELA ELLERE++VH
Sbjct: 362 HLYLFPGLQSLKKKARFLGYMVKCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRVH 421
Query: 441 IAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGV 500
+AHARR+M +A+Q+ L GD ++PIEHYLDAS+ITNGLSRAFSTGAW+H F++MER+SGV
Sbjct: 422 LAHARRKMTRAMQKHLSGDGDLKPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGV 481
Query: 501 VATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNL 560
VA LGRANPLQT+ +LRRTRQQV YTGKVGDARYPHPSHWGRVCFLSTPDGENCGL+KN+
Sbjct: 482 VANLGRANPLQTLIDLRRTRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNM 541
Query: 561 SGTGLVSLNTTKPIIPTLFCCGMENLADNTSTSLCGKYRIFLDGEWVGVCEDSLSFVTKV 620
S GLVS + + ++ LF CGME L D+T T L GK+++ L+G+WVG+C DS SFV ++
Sbjct: 542 SLLGLVSTQSLESVVEKLFACGMEELMDDTCTPLFGKHKVLLNGDWVGLCADSESFVAEL 601
Query: 621 RRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLL 680
+ +RR++ ++E+KRD+ EVRIF+DAGR+LRPLLVVENL ++ + K Y F LL
Sbjct: 602 KSRRRQSELPREMEIKRDKDDNEVRIFTDAGRLLRPLLVVENLQKLKQEKPSQYPFDHLL 661
Query: 681 DKGIIELVGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLGLSCGLVPFANHDHA 740
D GI+EL+G EEEEDC AW IK L+++ Y+HCELD+SFLLG+SC +VPFANHDH
Sbjct: 662 DHGILELIGIEEEEDCNTAWGIKQLLKEPKI--YTHCELDLSFLLGVSCAVVPFANHDHG 721
Query: 741 RRALFQSQKHSNQAIGFSTTNSNFRA-------------TFRTMTADCLGTPGYLSS--- 800
RR L+QSQKH QAIGFS+TN N R F+T+ ++CL +
Sbjct: 722 RRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLKKEVLFNGQNA 781
Query: 801 ------HTVYSPNPSSIMVRMLLWQSMFTWVTTRRFITYRSYKAEVDNKESSEKRRKSDD 860
H Y+ S +M + L + MF R RSYKAEVD K+ SEKR+K D+
Sbjct: 782 IVAVNVHLGYNQEDSIVMNKASLERGMF------RSEQIRSYKAEVDAKD-SEKRKKMDE 841
Query: 861 TINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQK 920
+ FGKT SKIG+VDSL+DDGFP+IGAN+ +GDIVIGRC ESGADHSIKLKHTE+G+VQK
Sbjct: 842 LVQFGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQK 901
Query: 921 VVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIV 980
VVLSSND+GKN+A VSLRQVRSPCLGDKFSSMHGQKGVLG+LE Q+NFPFTIQGIVPDIV
Sbjct: 902 VVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIV 961
Query: 981 INPHAFPSHRC--------------------------WRFSEICNAFLNSSVDAITDQLH 1040
INPHAFPS + + + F V IT+QLH
Sbjct: 962 INPHAFPSRQTPGQLLEAALSKGIACPIQKEGSSAAYTKLTRHATPFSTPGVTEITEQLH 1021
Query: 1041 RAGFSRWGSERVYNGRTGEMMRSLIFM-------------DKVKFRNTGPVHPLTRQPVA 1100
RAGFSRWG+ERVYNGR+GEMMRS+IFM DKVKFRNTGPVHPLTRQPVA
Sbjct: 1022 RAGFSRWGNERVYNGRSGEMMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVA 1081
BLAST of IVF0009560 vs. TAIR 10
Match:
AT3G23780.2 (nuclear RNA polymerase D2A )
HSP 1 Score: 1388.6 bits (3593), Expect = 0.0e+00
Identity = 698/1187 (58.80%), Postives = 865/1187 (72.87%), Query Frame = 0
Query: 21 PGMDLDTDDDDDYYSE--PVNINDLGEAFLKDFCK-------------NHQINSYNDFIK 80
P MD+D D +++ + +N+++LGE FL+ FCK +HQ+NSYN FI+
Sbjct: 2 PDMDIDVKDLEEFEATTGEINLSELGEGFLQSFCKKAATSFFDKYGLISHQLNSYNYFIE 61
Query: 81 NGVQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYNMLP 140
+G+Q F FG++LV+P +D KK D +WRYA+VKFG+VT++KP F+ + KE LP
Sbjct: 62 HGLQNVFQSFGEMLVEPSFDVVKKKDNDWRYATVKFGEVTVEKPTFF---SDDKELEFLP 121
Query: 141 RHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRL 200
HARLQNMTYS+R+K+N+ +E++ +V SDKFKTG+D YV+K+ ++ +D+ IG +
Sbjct: 122 WHARLQNMTYSARIKVNVQVEVFKNTVVKSDKFKTGQDNYVEKKILD--VKKQDILIGSI 181
Query: 201 PVMVNSDLCWMKDE-----QKRDCEFDRGGYFLIKGAEKVNIYCSRAICLRRLWISNVQG 260
PVMV S LC ++ +K DC FD+GGYF+IKGAEKV I +C +RLWISN
Sbjct: 182 PVMVKSILCKTSEKGKENCKKGDCAFDQGGYFVIKGAEKVFI-AQEQMCTKRLWISN-SP 241
Query: 261 WTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWILFFALGVSSDKE- 320
WTV++RSE KRNR I+RL EN K+ED K +EKVL VYFLSTE+PVW+LFFALGVSSDKE
Sbjct: 242 WTVSFRSENKRNRFIVRLSENEKAEDYKRREKVLTVYFLSTEIPVWLLFFALGVSSDKEA 301
Query: 321 --------------------------IWKDFRRGKRALTFLDNEIRKTSFPPAEKIEDCL 380
+ + FR G ALT+++ +I+ T FPPAE +++CL
Sbjct: 302 MDLIAFDGDDASITNSLIASIHVADAVCEAFRCGNNALTYVEQQIKSTKFPPAESVDECL 361
Query: 381 NLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVH 440
+LYLF L+ LK+K FLGYMVKCLL +Y G+RKC+NRD FRNKR ELA ELLERE++VH
Sbjct: 362 HLYLFPGLQSLKKKARFLGYMVKCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRVH 421
Query: 441 IAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGV 500
+AHARR+M +A+Q+ L GD ++PIEHYLDAS+ITNGLSRAFSTGAW+H F++MER+SGV
Sbjct: 422 LAHARRKMTRAMQKHLSGDGDLKPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGV 481
Query: 501 VATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNL 560
VA LGRANPLQT+ +LRRTRQQV YTGKVGDARYPHPSHWGRVCFLSTPDGENCGL+KN+
Sbjct: 482 VANLGRANPLQTLIDLRRTRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNM 541
Query: 561 SGTGLVSLNTTKPIIPTLFCCGMENLADNTSTSLCGKYRIFLDGEWVGVCEDSLSFVTKV 620
S GLVS + + ++ LF CGME L D+T T L GK+++ L+G+WVG+C DS SFV ++
Sbjct: 542 SLLGLVSTQSLESVVEKLFACGMEELMDDTCTPLFGKHKVLLNGDWVGLCADSESFVAEL 601
Query: 621 RRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLL 680
+ +RR++ ++E+KRD+ EVRIF+DAGR+LRPLLVVENL ++ + K Y F LL
Sbjct: 602 KSRRRQSELPREMEIKRDKDDNEVRIFTDAGRLLRPLLVVENLQKLKQEKPSQYPFDHLL 661
Query: 681 DKGIIELVGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLGLSCGLVPFANHDHA 740
D GI+EL+G EEEEDC AW IK L+++ Y+HCELD+SFLLG+SC +VPFANHDH
Sbjct: 662 DHGILELIGIEEEEDCNTAWGIKQLLKEPKI--YTHCELDLSFLLGVSCAVVPFANHDHG 721
Query: 741 RRALFQSQKHSNQAIGFSTTNSNFRA-------------TFRTMTADCLGTPGYLSS--- 800
RR L+QSQKH QAIGFS+TN N R F+T+ ++CL +
Sbjct: 722 RRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLKKEVLFNGQNA 781
Query: 801 ------HTVYSPNPSSIMVRMLLWQSMFTWVTTRRFITYRSYKAEVDNKESSEKRRKSDD 860
H Y+ S +M + L + MF R RSYKAEVD K+ SEKR+K D+
Sbjct: 782 IVAVNVHLGYNQEDSIVMNKASLERGMF------RSEQIRSYKAEVDAKD-SEKRKKMDE 841
Query: 861 TINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQK 920
+ FGKT SKIG+VDSL+DDGFP+IGAN+ +GDIVIGRC ESGADHSIKLKHTE+G+VQK
Sbjct: 842 LVQFGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQK 901
Query: 921 VVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIV 980
VVLSSND+GKN+A VSLRQVRSPCLGDKFSSMHGQKGVLG+LE Q+NFPFTIQGIVPDIV
Sbjct: 902 VVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIV 961
Query: 981 INPHAFPSHRC--------------------------WRFSEICNAFLNSSVDAITDQLH 1040
INPHAFPS + + + F V IT+QLH
Sbjct: 962 INPHAFPSRQTPGQLLEAALSKGIACPIQKEGSSAAYTKLTRHATPFSTPGVTEITEQLH 1021
Query: 1041 RAGFSRWGSERVYNGRTGEMMRSLIFM-------------DKVKFRNTGPVHPLTRQPVA 1100
RAGFSRWG+ERVYNGR+GEMMRS+IFM DKVKFRNTGPVHPLTRQPVA
Sbjct: 1022 RAGFSRWGNERVYNGRSGEMMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVA 1081
BLAST of IVF0009560 vs. TAIR 10
Match:
AT3G18090.1 (nuclear RNA polymerase D2B )
HSP 1 Score: 1286.6 bits (3328), Expect = 0.0e+00
Identity = 643/1065 (60.38%), Postives = 790/1065 (74.18%), Query Frame = 0
Query: 129 RLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVM 188
RLQNMTYS+R+K+N +E++ + ++ DKFKTG+D+YV+KE ++ +D+ IG +PVM
Sbjct: 4 RLQNMTYSARIKVNAQVEVFKKIVIKHDKFKTGQDEYVEKEILD--VKKQDILIGSIPVM 63
Query: 189 VNSDLCWMKDEQKRDCE-----FDRGGYFLIKGAEKVNIYCSRAICLRRLWISNVQGWTV 248
V S LC ++ K +C+ FD+GGYF+IKGAEKV I +C +RLWISN WTV
Sbjct: 64 VKSVLCKTSEKGKENCKKGNCAFDQGGYFVIKGAEKVFI-AQEQMCTKRLWISN-SPWTV 123
Query: 249 AYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWILFFALGVSSDKE---- 308
++RSE KRNR I+RL EN K+ED K EKVL VYFLSTE+PVW+LFFALGVSSDKE
Sbjct: 124 SFRSETKRNRFIVRLSENEKAEDYKIMEKVLTVYFLSTEIPVWLLFFALGVSSDKEAMDL 183
Query: 309 -----------------------IWKDFRRGKRALTFLDNEIRKTSFPPAEKIEDCLNLY 368
+ + FR G ALT+++++I+ T FPPAE ++DCL LY
Sbjct: 184 IAFDGDDASITNSLIASIHEADAVCEAFRCGNNALTYVEHQIKSTKFPPAESVDDCLRLY 243
Query: 369 LFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVHIAH 428
LF L+GLK+K FLGYMVKCLL AY G+RKC+NRD FRNKR ELA ELLERE++VH+AH
Sbjct: 244 LFPCLQGLKKKARFLGYMVKCLLSAYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAH 303
Query: 429 ARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGVVAT 488
ARR+M +A+Q+ L GD ++PIEHYLDAS+ITNGL+RAFSTGAW+H F++MER+SGVVA
Sbjct: 304 ARRKMTRAMQKQLSGDGDLKPIEHYLDASVITNGLNRAFSTGAWSHPFRKMERVSGVVAN 363
Query: 489 LGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSGT 548
LGRANPLQT+ +LRRTRQQV YTGKVGDAR+PHPSHWGRVCFLSTPDGENCGL+KN+S
Sbjct: 364 LGRANPLQTLIDLRRTRQQVLYTGKVGDARHPHPSHWGRVCFLSTPDGENCGLVKNMSLL 423
Query: 549 GLVSLNTTKPIIPTLFCCGMENLADNTSTSLCGKYRIFLDGEWVGVCEDSLSFVTKVRRK 608
GLVS + ++ LF CGME L ++TST LCGK+++ L+G+WVG+C DS SFV +++ +
Sbjct: 424 GLVSTQGLESVVEMLFTCGMEELMNDTSTPLCGKHKVLLNGDWVGLCADSESFVGELKSR 483
Query: 609 RRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKG 668
RR++ ++E+KRD+ EVRIF+DAGR+LRPLLVVENL+++ + K Y F+ LLD+G
Sbjct: 484 RRQSELPLEMEIKRDKDDNEVRIFTDAGRLLRPLLVVENLHKLKQDKPTQYPFKHLLDQG 543
Query: 669 IIELVGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARRA 728
I+EL+G EEEEDC AW IK L+++ Y+HCELD+SFLLG+SC +VPFANHDH +R
Sbjct: 544 ILELIGIEEEEDCTTAWGIKQLLKE--PKNYTHCELDLSFLLGVSCAIVPFANHDHGKRV 603
Query: 729 LFQSQKHSNQAIGFSTTNSNFRA-------------TFRTMTADCLGTPGYLSS------ 788
L+QSQKH QAIGFS+TN N R F+T+ ++CL +
Sbjct: 604 LYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLEKEVLFNGQNAIVA 663
Query: 789 ---HTVYSPNPSSIMVRMLLWQSMFTWVTTRRFITYRSYKAEVDNKESSEKRRKSDDTIN 848
H Y+ S +M + L + MF R RSYKAEVD K+ SEKR+K D+ +
Sbjct: 664 VNVHLGYNQEDSIVMNKASLERGMF------RSEQIRSYKAEVDTKD-SEKRKKMDELVQ 723
Query: 849 FGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVL 908
FGKT SKIG+VDSL+DDGFP+IGAN+ +GDIVIGRC ESGADHSIKLKHTE+G+VQKVVL
Sbjct: 724 FGKTYSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKVVL 783
Query: 909 SSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINP 968
SSND+GKN+A VSLRQVRSPCLGDKFSSMHGQKGVLG+LE Q+NFPFTIQGIVPDIVINP
Sbjct: 784 SSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINP 843
Query: 969 HAFPSHRC---------------------------WRFSEICNAFLNSSVDAITDQLHRA 1028
HAFPS + + + F V IT+QLHRA
Sbjct: 844 HAFPSRQTPGQLLEAALSKGIACPIQKKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRA 903
Query: 1029 GFSRWGSERVYNGRTGEMMRSLIFM-------------DKVKFRNTGPVHPLTRQPVADR 1088
GFSRWG+ERVYNGR+GEMMRSLIFM +KVKFRNTGPVHPLTRQPVADR
Sbjct: 904 GFSRWGNERVYNGRSGEMMRSLIFMGPTFYQRLVHMSENKVKFRNTGPVHPLTRQPVADR 963
Query: 1089 KRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVASVIQRSVAGGRK 1100
KRFGGI+FGEMERDCLIAHGASANLHERLFTLSDSSQMH+C+KCK A+VI+R+ + GRK
Sbjct: 964 KRFGGIRFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRK 1023
BLAST of IVF0009560 vs. TAIR 10
Match:
AT4G21710.1 (DNA-directed RNA polymerase family protein )
HSP 1 Score: 514.2 bits (1323), Expect = 2.5e-145
Identity = 368/1211 (30.39%), Postives = 579/1211 (47.81%), Query Frame = 0
Query: 15 EGEDLSPGMDLDTDDDDDYYSEPVNINDLGEAFLKDFCKNHQINSYNDFIKNGVQKAFDF 74
E + P DDDD+ ++ + F + Q++S+++FI+N +Q+ D
Sbjct: 2 EYNEYEPEPQYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 61
Query: 75 FGDILVQP--GYDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYNMLPRHARLQN 134
DI ++P ++P + D + FG++ L KP + G+ + P+ ARL+N
Sbjct: 62 SADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMM--TESDGETATLFPKAARLRN 121
Query: 135 MTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSD 194
+TYS+ + ++++ + K G D E V D VFIG++P+M+ S
Sbjct: 122 LTYSAPLYVDVTKRV----------IKKGH----DGEEVTETQDFTKVFIGKVPIMLRSS 181
Query: 195 LCWMKDEQKRD------CEFDRGGYFLIKGAEKVNIYCSRAICLRRLWISNVQGWTVAYR 254
C + ++D C +D+GGYF+I G+EKV I + Q AY
Sbjct: 182 YCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 241
Query: 255 SEVK-----RNR----LIIRLVENSKSEDLKSKEKV-LNVYFLSTEVPVWILFFALGVSS 314
EV+ +NR + +R++ + ++ S + + + ++ TE+P+ I+F ALG +
Sbjct: 242 GEVRSMAENQNRPPSTMFVRMLARASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVA 301
Query: 315 DKEIWKDFRRGKRALTFLDNEIRKTSFPPAEK---IEDCLNLYLFASLKGL--------- 374
DK+I + F D ++ + P E+ I++ L + +G
Sbjct: 302 DKDILEHI-----CYDFADTQMMELLRPSLEEAFVIQNQLVALDYIGKRGATVGVTKEKR 361
Query: 375 -----------------------KQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFEL 434
+K ++ GY++ LL GRR D+RD + NKR +L
Sbjct: 362 IKYARDILQKEMLPHVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDL 421
Query: 435 AAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGAWA 494
A LL ++ R + +Q+ + ++V ++ + A IT+GL + +TG W
Sbjct: 422 AGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVN-LQFAIKAKTITSGLKYSLATGNWG 481
Query: 495 HAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLST 554
A R +GV L R T++ LRR + GK+ R H S WG +C T
Sbjct: 482 QANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAET 541
Query: 555 PDGENCGLIKNLSGTGLVSLNTTK-PIIPTLFCCGMENLADNTSTSLCGKYRIFLDGEWV 614
P+G+ CGL+KNL+ +++ + PI+ L G EN + + + + +IF++G WV
Sbjct: 542 PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWV 601
Query: 615 GVCEDSLSFVTKVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRID 674
GV D V +RR RRR +V V RD +LKE+RI++D GR RPL +V+N +
Sbjct: 602 GVHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQKLLI 661
Query: 675 KSK----------GENYTFQSLLDKGIIELVGTEEEEDCRVAWSIKHLM------EDEGT 734
K + E + L+ KG IE + TEEEE ++ +I L+ E+ T
Sbjct: 662 KKRDIYALQQRESAEEDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYT 721
Query: 735 TKYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRAT---- 794
Y+HCE+ S +LG+ ++PF +H+ + R +QS QA+G TN FR
Sbjct: 722 ENYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGIYVTNYQFRMDTLAY 781
Query: 795 -------------------FRTMTADCLGTPGYLSSHTVYSPNPSSIMVRMLLWQSMFTW 854
FR + A + +S ++ Y+ S IM + + + F
Sbjct: 782 VLYYPQKPLVTTRAMEHLHFRQLPAG-INAIVAISCYSGYNQEDSVIMNQSSIDRGFF-- 841
Query: 855 VTTRRFITYRSYKAEVDNKESSEKRRKSDDTINFGKTQS-KIGRVDSLDDDGFPYIGANL 914
R + +RSY+ E K+ ++ + G T + G D LDDDG G +
Sbjct: 842 ----RSLFFRSYRDE--EKKMGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRV 901
Query: 915 QSGDIVIGRCAE-------------SGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVS 974
D++IG+ + DHSI L+H+E GMV +V+L++N DG + V
Sbjct: 902 SGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVR 961
Query: 975 LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSHRCWRFSE 1034
+R VR P +GDKFSS HGQKG +G +QE+ P+TI+G+ PDI++NPHA PS
Sbjct: 962 VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLI 1021
Query: 1035 IC---------------NAFLNSSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFM 1091
C F + +VD I+ LH+ G+ G ER+YNG TG + ++IF+
Sbjct: 1022 ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRPLTAMIFL 1081
BLAST of IVF0009560 vs. TAIR 10
Match:
AT5G45140.1 (nuclear RNA polymerase C2 )
HSP 1 Score: 337.8 bits (865), Expect = 3.3e-92
Identity = 334/1228 (27.20%), Postives = 541/1228 (44.06%), Query Frame = 0
Query: 12 MNSEGEDLSPGMDLDTDD---DDDYYSEPVNIN----DLGEAFLK--DFCKNHQINSYND 71
M + EDL DL DD D + S P+ L FLK K H ++S+N
Sbjct: 1 MGLDQEDL----DLTNDDHFIDKEKLSAPIKSTADKFQLVPEFLKVRGLVKQH-LDSFNY 60
Query: 72 FIKNGVQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYN 131
FI G+ K + + DPS ++F KV + +P N
Sbjct: 61 FINVGIHKIVK--ANSRITSTVDPS---------IYLRFKKVRVGEPSI---INVNTVEN 120
Query: 132 MLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFI 191
+ P RL +MTY++ + +NI + +K K+ KD +V I
Sbjct: 121 INPHMCRLADMTYAAPIFVNIEYVHGSH----GNKAKSAKD---------------NVII 180
Query: 192 GRLPVMVNSDLCWM--KDEQK----RDCEFDRGGYFLIKGAEKVNIYCSRAICLRRLWIS 251
GR+P+M+ S C + KDE++ +C D GGYF+IKG EKV + + R + S
Sbjct: 181 GRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDS 240
Query: 252 NVQG---WTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKV-LNVYFLSTEVPVWILFFAL 311
+ +G +V +E+ +++ +I++ KEK+ L ++ ++P+ I+ A+
Sbjct: 241 DKKGNINASVTSSTEMTKSKTVIQM----------EKEKIYLFLHRFVKKIPIIIVLKAM 300
Query: 312 GVSSDKEIWKDFRRG----------------------KRALTFLDNEIRKTSF-PPAEK- 371
G+ SD+EI + R K+AL +L+ +++K S+ P EK
Sbjct: 301 GMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKISYGTPPEKD 360
Query: 372 ------IEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELA 431
+ D ++ +QKC ++G M++ +++A + D++D NKR EL+
Sbjct: 361 GRALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELS 420
Query: 432 AELL----ERELKVHIAHARRRMEKALQRDLYGDR-QVRPIEHYLDASIITNGLSRAFST 491
+L+ E K ++ A + ++ L + + R + I+ GL R ST
Sbjct: 421 GQLISLLFEDLFKTMLSEAIKNVDHILNKPIRASRFDFSQCLNKDSRYSISLGLERTLST 480
Query: 492 GAWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVC 551
G + RM R G+ L R + + +M + + Q + KV R PS WG +C
Sbjct: 481 GNFDIKRFRMHR-KGMTQVLTRLSFIGSMGFITKISPQFEKSRKVSGPRSLQPSQWGMLC 540
Query: 552 FLSTPDGENCGLIKNLS-GTGLVSLNTTKPIIPTLFCCGMENLADNTSTSL--CGKYRIF 611
TP+GE+CGL+KNL+ T + + P++ + G+ +L ++ L + +
Sbjct: 541 PCDTPEGESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPDSFLVI 600
Query: 612 LDGEWVGVCEDSLSFVTKVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVE 671
L+G +G F +RR RR V V +E+ V + SD GR+ RPL++ +
Sbjct: 601 LNGLILGKHSRPQYFANSLRRLRRAGKIGEFVSVFTNEKQHCVYVASDVGRVCRPLVIAD 660
Query: 672 -NLNRIDKSKGENY-----TFQSLLDKGIIELVGTEEEEDCRVAWSIKHLMEDEGTTKY- 731
++R+ + + TF + G+IE + EE + +A L E +GTT+
Sbjct: 661 KGISRVKQHHMKELQDGVRTFDDFIRDGLIEYLDVNEENNALIA-----LYESDGTTELD 720
Query: 732 ----------SHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNF 791
+H E++ +LG+ GL+P+ +H+ + R +Q QA+G N
Sbjct: 721 EGAEAAKADTTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAM-GKQAMGNIAYNQLN 780
Query: 792 RATFRTMTADCLGTPGYLSSHTVYSPNP--SSIMVRML----LWQSMFTWVTTRRFITYR 851
R + T YL VY P ++ + ++ L V F Y
Sbjct: 781 R----------MDTLLYL---LVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSFSGYD 840
Query: 852 SYKAEVDNKESSEK-------------------RRKSDDTINFGKTQSKIGRVDSLDDDG 911
A V NK S ++ +D + +T ++ LDDDG
Sbjct: 841 IEDAIVMNKSSLDRGFGRCIVMKKIVAMSQKYDNCTADRILIPQRTGPDAEKMQILDDDG 900
Query: 912 FPYIGANLQSGDIVIGR-----------CAESGADHS-----IKLKHTEKGMVQKVVLSS 971
G ++ DI I + A S + + K E +V +V L S
Sbjct: 901 LATPGEIIRPNDIYINKQVPVDTVTKFTSALSDSQYRPAREYFKGPEGETQVVDRVALCS 960
Query: 972 NDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHA 1031
+ G+ +R R P LGDKFSS HGQKGV G + QE+FPF+ GI PD+++NPH
Sbjct: 961 DKKGQLCIKYIIRHTRRPELGDKFSSRHGQKGVCGIIIQQEDFPFSELGICPDLIMNPHG 1020
Query: 1032 FPSH----------------RCWRFSEICNAFLNSS-----VDAITDQLHRAGFSRWGSE 1091
FPS C RF +AF S V+ I+ L GFS G +
Sbjct: 1021 FPSRMTVGKMIELLGSKAGVSCGRF-HYGSAFGERSGHADKVETISATLVEKGFSYSGKD 1080
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Q9LK40 | 0.0e+00 | 58.80 | DNA-directed RNA polymerases IV and V subunit 2 OS=Arabidopsis thaliana OX=3702 ... | [more] |
| Q9LV32 | 0.0e+00 | 57.08 | DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana OX=3702 GN=NRPD... | [more] |
| P38420 | 3.6e-144 | 30.39 | DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis thaliana OX=3702 GN=NRPB... | [more] |
| Q42877 | 3.7e-141 | 29.79 | DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum OX=4081 GN=R... | [more] |
| Q6FLD5 | 5.7e-134 | 29.42 | DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata (strain ATCC 200... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3D8Y5 | 0.0e+00 | 87.38 | DNA-directed RNA polymerase subunit beta OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
| A0A1S3BUT1 | 0.0e+00 | 87.38 | DNA-directed RNA polymerase subunit beta OS=Cucumis melo OX=3656 GN=LOC103493748... | [more] |
| A0A0A0L319 | 0.0e+00 | 85.63 | DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=Csa_4G651... | [more] |
| A0A6J1FHZ2 | 0.0e+00 | 81.48 | DNA-directed RNA polymerase subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111... | [more] |
| A0A6J1IXN3 | 0.0e+00 | 81.23 | DNA-directed RNA polymerase subunit beta OS=Cucurbita maxima OX=3661 GN=LOC11148... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_008452849.1 | 0.0 | 87.38 | PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Cucumis melo] >... | [more] |
| XP_031740252.1 | 0.0 | 85.63 | DNA-directed RNA polymerases IV and V subunit 2 [Cucumis sativus] >KGN55429.1 hy... | [more] |
| XP_038897771.1 | 0.0 | 83.72 | DNA-directed RNA polymerases IV and V subunit 2-like [Benincasa hispida] | [more] |
| KAG7037651.1 | 0.0 | 81.56 | DNA-directed RNA polymerases IV and V subunit 2 [Cucurbita argyrosperma subsp. a... | [more] |
| XP_023524029.1 | 0.0 | 81.48 | DNA-directed RNA polymerases IV and V subunit 2-like [Cucurbita pepo subsp. pepo... | [more] |
