IVF0009530 (gene) Melon (IVF77) v1

Overview


Name	IVF0009530
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr07: 12661723 .. 12662076 (+)
RNA-Seq Expression	IVF0009530
Synteny	IVF0009530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCGACAAATTCAAAAGCCACCAAGCATCGGTGGACAACCATTAAAGATGATGCGTTAGTTGAGTGCTTACTACAACTAGTGGAGGAAGGTGGCTGGAGGGCTAATAATGAAACATTCAAACCGAGATATTTGGTACAAGTACAAAAACTAATGAAAGAAAAAATTCCTAGAAGCAACATACAAGTGACTTTAAATCTAGAGTCGAGAGTAAAATTTCTAAAGAAGCAGTACACTGCCATAGCAAAGATGATGGGGCCAGCGTGTAGTAGGTTTGGTTGGAATGAGGAACGAAAGTGCATTGAGGCAGAGAAATCTGTGTTCGATGACTGGGTTAAGGTAAGAAGATGA

mRNA sequence

ATGGCGTCGACAAATTCAAAAGCCACCAAGCATCGGTGGACAACCATTAAAGATGATGCGTTAGTTGAGTGCTTACTACAACTAGTGGAGGAAGGTGGCTGGAGGGCTAATAATGAAACATTCAAACCGAGATATTTGGTACAAGTACAAAAACTAATGAAAGAAAAAATTCCTAGAAGCAACATACAAGTGACTTTAAATCTAGAGTCGAGAGTAAAATTTCTAAAGAAGCAGTACACTGCCATAGCAAAGATGATGGGGCCAGCGTGTAGTAGGTTTGGTTGGAATGAGGAACGAAAGTGCATTGAGGCAGAGAAATCTGTGTTCGATGACTGGGTTAAGGTAAGAAGATGA

Coding sequence (CDS)

ATGGCGTCGACAAATTCAAAAGCCACCAAGCATCGGTGGACAACCATTAAAGATGATGCGTTAGTTGAGTGCTTACTACAACTAGTGGAGGAAGGTGGCTGGAGGGCTAATAATGAAACATTCAAACCGAGATATTTGGTACAAGTACAAAAACTAATGAAAGAAAAAATTCCTAGAAGCAACATACAAGTGACTTTAAATCTAGAGTCGAGAGTAAAATTTCTAAAGAAGCAGTACACTGCCATAGCAAAGATGATGGGGCCAGCGTGTAGTAGGTTTGGTTGGAATGAGGAACGAAAGTGCATTGAGGCAGAGAAATCTGTGTTCGATGACTGGGTTAAGGTAAGAAGATGA

Protein sequence

MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRSNIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKVRR

Homology

[Close]

BLAST of IVF0009530 vs. ExPASy TrEMBL
Match: A0A5D3BC95 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00380 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.3e-59
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 60
           MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS
Sbjct: 1   MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 60

Query: 61  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVK 115
           NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVK
Sbjct: 61  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVK 114

[Close]

BLAST of IVF0009530 vs. ExPASy TrEMBL
Match: A0A1S3C252 (uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.3e-59
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 60
           MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS
Sbjct: 33  MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 92

Query: 61  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVK 115
           NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVK
Sbjct: 93  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVK 146

[Close]

BLAST of IVF0009530 vs. ExPASy TrEMBL
Match: A0A5A7U7F7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001200 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.2e-47
Identity = 100/117 (85.47%), Postives = 104/117 (88.89%), Query Frame = 0


Query: 1   MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 60
           MASTNSKATKHRWTTI D+ LVECLLQLVEEGGWRA+N TFK  YLVQVQKLMKEKI  S
Sbjct: 1   MASTNSKATKHRWTTI-DEVLVECLLQLVEEGGWRADNGTFKLGYLVQVQKLMKEKILGS 60

Query: 61  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKVRR 118
           NIQVT NL+SRVK LKKQY AIA+MMGPACS FGWNEERKCIEAEKSVFDDWVK  R
Sbjct: 61  NIQVTPNLKSRVKILKKQYIAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVKTAR 116

[Close]

BLAST of IVF0009530 vs. ExPASy TrEMBL
Match: A0A5A7TF70 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001930 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.4e-46
Identity = 93/111 (83.78%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 7   KATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRSNIQVTL 66
           +A KH+WTTI+++ALVECLLQLVEEGGWR +N TFK  YLVQVQKLMKEKIP SNIQVT 
Sbjct: 223 EANKHQWTTIENEALVECLLQLVEEGGWRVDNGTFKSGYLVQVQKLMKEKIPESNIQVTP 282

Query: 67  NLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKVRR 118
           NLESRVK LKKQYT IAKMMGPAC+ FGWNEERKCIEAEKSVFDDWVKV R
Sbjct: 283 NLESRVKILKKQYTVIAKMMGPACNEFGWNEERKCIEAEKSVFDDWVKVLR 333

[Close]

BLAST of IVF0009530 vs. ExPASy TrEMBL
Match: A0A5A7SW62 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00210 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.7e-43
Identity = 90/114 (78.95%), Postives = 97/114 (85.09%), Query Frame = 0


Query: 1   MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 60
           MAS NSK TKH WTTI+D+ALVECLLQLVE+G WR +N TFKP YLVQVQKLMKEKI  S
Sbjct: 86  MASINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILES 145

Query: 61  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVK 115
           NIQVT NLES VK LKKQYT IA+MMGP CS F WN+ERKCIEAEKSV +DWVK
Sbjct: 146 NIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVK 199

[Close]

BLAST of IVF0009530 vs. NCBI nr
Match: TYJ96933.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 235 bits (600), Expect = 2.46e-76
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 60
           MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS
Sbjct: 1   MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 60

Query: 61  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVK 114
           NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVK
Sbjct: 61  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVK 114

[Close]

BLAST of IVF0009530 vs. NCBI nr
Match: XP_008455678.1 (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 235 bits (600), Expect = 6.87e-76
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 60
           MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS
Sbjct: 33  MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 92

Query: 61  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVK 114
           NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVK
Sbjct: 93  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVK 146

[Close]

BLAST of IVF0009530 vs. NCBI nr
Match: KAA0050106.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 197 bits (500), Expect = 7.99e-61
Identity = 100/117 (85.47%), Postives = 104/117 (88.89%), Query Frame = 0


Query: 1   MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 60
           MASTNSKATKHRWTTI D+ LVECLLQLVEEGGWRA+N TFK  YLVQVQKLMKEKI  S
Sbjct: 1   MASTNSKATKHRWTTI-DEVLVECLLQLVEEGGWRADNGTFKLGYLVQVQKLMKEKILGS 60

Query: 61  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKVRR 117
           NIQVT NL+SRVK LKKQY AIA+MMGPACS FGWNEERKCIEAEKSVFDDWVK  R
Sbjct: 61  NIQVTPNLKSRVKILKKQYIAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVKTAR 116

[Close]

BLAST of IVF0009530 vs. NCBI nr
Match: KAA0041970.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK17906.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 194 bits (494), Expect = 5.11e-59
Identity = 93/111 (83.78%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 7   KATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRSNIQVTL 66
           +A KH+WTTI+++ALVECLLQLVEEGGWR +N TFK  YLVQVQKLMKEKIP SNIQVT 
Sbjct: 223 EANKHQWTTIENEALVECLLQLVEEGGWRVDNGTFKSGYLVQVQKLMKEKIPESNIQVTP 282

Query: 67  NLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKVRR 117
           NLESRVK LKKQYT IAKMMGPAC+ FGWNEERKCIEAEKSVFDDWVKV R
Sbjct: 283 NLESRVKILKKQYTVIAKMMGPACNEFGWNEERKCIEAEKSVFDDWVKVLR 333

[Close]

BLAST of IVF0009530 vs. NCBI nr
Match: KGN51053.1 (hypothetical protein Csa_009100 [Cucumis sativus])

HSP 1 Score: 174 bits (442), Expect = 3.81e-54
Identity = 90/117 (76.92%), Postives = 94/117 (80.34%), Query Frame = 0


Query: 1   MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 60
           MASTNSKATKHRWTTI             EEGGWRA N TFKP YLVQVQKLMKEKIP S
Sbjct: 1   MASTNSKATKHRWTTI-------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGS 60

Query: 61  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKVRR 117
           NIQVT NLE RVK LKKQYTAI +MMGP+CSRFGWNE+RKCIEAEK VFDD VKVR+
Sbjct: 61  NIQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRKCIEAEKFVFDDLVKVRQ 104

The following BLAST results are available for this feature:

BLAST of IVF0009530 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0009530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BC95	4.3e-59	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C252	4.3e-59	100.00	uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 P...	[more]
A0A5A7U7F7	2.2e-47	85.47	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TF70	1.4e-46	83.78	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7SW62	5.7e-43	78.95	Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of IVF0009530 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ96933.1	2.46e-76	100.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_008455678.1	6.87e-76	100.00	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
KAA0050106.1	7.99e-61	85.47	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0041970.1	5.11e-59	83.78	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK17906.1 putative nucleas...	[more]
KGN51053.1	3.81e-54	76.92	hypothetical protein Csa_009100 [Cucumis sativus]	[more]

BLAST of IVF0009530 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 12..110 e-value: 3.4E-9 score: 37.6
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 2..115
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 2..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0009530.2	IVF0009530.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding