IVF0009510 (gene) Melon (IVF77) v1

Overview
NameIVF0009510
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionAcidic leucine-rich nuclear phosphoprotein 32 family member A-like
Locationchr12: 11319141 .. 11319365 (+)
RNA-Seq ExpressionIVF0009510
SyntenyIVF0009510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACTGCCTGAAGTAGACGATGTTGAAAATGAGCAACTGAATGTACTCGAAATCTTTAACGACAATCGAGTGGATGAACACATCGATGATGACACTTTGTGTAGGACTGACATTGATCCTACAATCATTGAAAGATCAGTTGTGTGTCATGTCGCTGACGAGTTCATAGACGATGAAGATGAAAAATTGTCACATCAAAGCGAAACAAGTGACGACGAATGA

mRNA sequence

ATGGGACTGCCTGAAGTAGACGATGTTGAAAATGAGCAACTGAATGTACTCGAAATCTTTAACGACAATCGAGTGGATGAACACATCGATGATGACACTTTGTGTAGGACTGACATTGATCCTACAATCATTGAAAGATCAGTTGTGTGTCATGTCGCTGACGAGTTCATAGACGATGAAGATGAAAAATTGTCACATCAAAGCGAAACAAGTGACGACGAATGA

Coding sequence (CDS)

ATGGGACTGCCTGAAGTAGACGATGTTGAAAATGAGCAACTGAATGTACTCGAAATCTTTAACGACAATCGAGTGGATGAACACATCGATGATGACACTTTGTGTAGGACTGACATTGATCCTACAATCATTGAAAGATCAGTTGTGTGTCATGTCGCTGACGAGTTCATAGACGATGAAGATGAAAAATTGTCACATCAAAGCGAAACAAGTGACGACGAATGA

Protein sequence

MGLPEVDDVENEQLNVLEIFNDNRVDEHIDDDTLCRTDIDPTIIERSVVCHVADEFIDDEDEKLSHQSETSDDE
Homology
BLAST of IVF0009510 vs. ExPASy TrEMBL
Match: A0A5D3DQ64 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00160 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 1  MGLPEVDDVENEQLNVLEIFNDNRVDEHIDDDTLCRTDIDPTIIERSVVCHVADEFIDDE 60
          MGLPEVDDVENEQLNVLEIFNDNRVDEHIDDDTLCRTDIDPTIIERSVVCHVADEFIDDE
Sbjct: 1  MGLPEVDDVENEQLNVLEIFNDNRVDEHIDDDTLCRTDIDPTIIERSVVCHVADEFIDDE 60

Query: 61 DEKLSHQSETS 72
          DEKLSHQSETS
Sbjct: 61 DEKLSHQSETS 71

BLAST of IVF0009510 vs. ExPASy TrEMBL
Match: A0A5D3E2M2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001260 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.0e-21
Identity = 52/72 (72.22%), Postives = 65/72 (90.28%), Query Frame = 0

Query: 3  LPEVDDVENEQLNVLEIFNDNRVDEHIDDDTLCRTDIDPTIIERSVVCHVADEFIDDEDE 62
          +PEVDDVENEQLNVLEI  D++VDEHI+DDT+CR D+DPTI+ERS++CH+A+ FI D DE
Sbjct: 1  MPEVDDVENEQLNVLEIIVDHQVDEHIEDDTICRLDVDPTIVERSIICHIANNFIHDGDE 60

Query: 63 KLSHQSETSDDE 75
          +LSHQS +SDDE
Sbjct: 61 QLSHQSRSSDDE 72

BLAST of IVF0009510 vs. ExPASy TrEMBL
Match: A0A5A7TAT1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00630 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.6e-19
Identity = 53/72 (73.61%), Postives = 61/72 (84.72%), Query Frame = 0

Query: 3   LPEVDDVENEQLNVLEIFNDNRVDEHIDDDTLCRTDIDPTIIERSVVCHVADEFIDDEDE 62
           +PEVD V NE LNVLEI  ++R+DEHI DDTLCRTD+D TI+ERSVVCHV D+FIDD DE
Sbjct: 108 VPEVDGVNNEHLNVLEIVVNHRLDEHIKDDTLCRTDLDLTIVERSVVCHVTDDFIDDVDE 167

Query: 63  KLSHQSETSDDE 75
            LSH SETSDD+
Sbjct: 168 HLSHASETSDDD 179

BLAST of IVF0009510 vs. ExPASy TrEMBL
Match: A0A5D3D1G9 (Gamma-aminobutyrate transaminase POP2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00740 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.0e-18
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 0

Query: 3  LPEVDDVENEQLNVLEIFNDNRVDEHIDDDTLCRTDIDPTIIERSVVCHVADEFIDDEDE 62
          +PEVDDVENE LNVLEI   +RVDEHI+DDTLCRTD+DPTI+ER +V HV D+FID+ DE
Sbjct: 1  MPEVDDVENEDLNVLEIVVSHRVDEHIEDDTLCRTDVDPTIVERPIVRHVTDDFIDNVDE 60

Query: 63 KLSHQSETS 72
           LSH S TS
Sbjct: 61 HLSHASGTS 69

BLAST of IVF0009510 vs. ExPASy TrEMBL
Match: A0A5A7TEC7 (DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00900 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-17
Identity = 50/72 (69.44%), Postives = 63/72 (87.50%), Query Frame = 0

Query: 3   LPEVDDVENEQLNVLEIFNDNRVDEHIDDDTLCRTDIDPTIIERSVVCHVADEFIDDEDE 62
           +PEVDD+ENEQLNVLEI   +RVDEH++DDTL R D+DPTI+ERSVV HV ++FIDD DE
Sbjct: 99  MPEVDDIENEQLNVLEIIVGHRVDEHMEDDTLYRIDVDPTIVERSVVRHVTNDFIDDGDE 158

Query: 63  KLSHQSETSDDE 75
           +LSH+S TS++E
Sbjct: 159 QLSHESGTSNNE 170

BLAST of IVF0009510 vs. NCBI nr
Match: KAA0035428.1 (uncharacterized protein E6C27_scaffold285G00470 [Cucumis melo var. makuwa] >TYK25724.1 uncharacterized protein E5676_scaffold862G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (354), Expect = 4.68e-41
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 1  MGLPEVDDVENEQLNVLEIFNDNRVDEHIDDDTLCRTDIDPTIIERSVVCHVADEFIDDE 60
          MGLPEVDDVENEQLNVLEIFNDNRVDEHIDDDTLCRTDIDPTIIERSVVCHVADEFIDDE
Sbjct: 1  MGLPEVDDVENEQLNVLEIFNDNRVDEHIDDDTLCRTDIDPTIIERSVVCHVADEFIDDE 60

Query: 61 DEKLSHQSETS 71
          DEKLSHQSETS
Sbjct: 61 DEKLSHQSETS 71

BLAST of IVF0009510 vs. NCBI nr
Match: KAA0057443.1 (uncharacterized protein E6C27_scaffold280G003210 [Cucumis melo var. makuwa] >TYK30142.1 uncharacterized protein E5676_scaffold216G001260 [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (273), Expect = 1.52e-29
Identity = 52/72 (72.22%), Postives = 65/72 (90.28%), Query Frame = 0

Query: 3  LPEVDDVENEQLNVLEIFNDNRVDEHIDDDTLCRTDIDPTIIERSVVCHVADEFIDDEDE 62
          +PEVDDVENEQLNVLEI  D++VDEHI+DDT+CR D+DPTI+ERS++CH+A+ FI D DE
Sbjct: 1  MPEVDDVENEQLNVLEIIVDHQVDEHIEDDTICRLDVDPTIVERSIICHIANNFIHDGDE 60

Query: 63 KLSHQSETSDDE 74
          +LSHQS +SDDE
Sbjct: 61 QLSHQSRSSDDE 72

BLAST of IVF0009510 vs. NCBI nr
Match: KAA0040564.1 (uncharacterized protein E6C27_scaffold262G001340 [Cucumis melo var. makuwa] >TYK05607.1 uncharacterized protein E5676_scaffold98G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (255), Expect = 1.67e-25
Identity = 53/71 (74.65%), Postives = 60/71 (84.51%), Query Frame = 0

Query: 3   LPEVDDVENEQLNVLEIFNDNRVDEHIDDDTLCRTDIDPTIIERSVVCHVADEFIDDEDE 62
           +PEVD V NE LNVLEI  ++R+DEHI DDTLCRTD+D TI+ERSVVCHV D+FIDD DE
Sbjct: 108 VPEVDGVNNEHLNVLEIVVNHRLDEHIKDDTLCRTDLDLTIVERSVVCHVTDDFIDDVDE 167

Query: 63  KLSHQSETSDD 73
            LSH SETSDD
Sbjct: 168 HLSHASETSDD 178

BLAST of IVF0009510 vs. NCBI nr
Match: KAA0054789.1 (uncharacterized protein E6C27_scaffold437G00740 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 1.44e-24
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 0

Query: 1  MGLPEVDDVENEQLNVLEIFNDNRVDEHIDDDTLCRTDIDPTIIERSVVCHVADEFIDDE 60
          + + EVDDVENE LN+LEI   +RVDEHI+DDT CRTD+DPTI+ER +V HV D+FI+D 
Sbjct: 5  LSVDEVDDVENEYLNILEIVVSHRVDEHIEDDTRCRTDVDPTIVERPIVHHVTDDFINDV 64

Query: 61 DEKLSHQSETSDD 73
          DE LSH SE SDD
Sbjct: 65 DEHLSHASEISDD 77

BLAST of IVF0009510 vs. NCBI nr
Match: TYK16299.1 (gamma-aminobutyrate transaminase POP2 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 2.53e-24
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 0

Query: 3  LPEVDDVENEQLNVLEIFNDNRVDEHIDDDTLCRTDIDPTIIERSVVCHVADEFIDDEDE 62
          +PEVDDVENE LNVLEI   +RVDEHI+DDTLCRTD+DPTI+ER +V HV D+FID+ DE
Sbjct: 1  MPEVDDVENEDLNVLEIVVSHRVDEHIEDDTLCRTDVDPTIVERPIVRHVTDDFIDNVDE 60

Query: 63 KLSHQSETS 71
           LSH S TS
Sbjct: 61 HLSHASGTS 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DQ641.2e-30100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E2M23.0e-2172.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TAT13.6e-1973.61Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3D1G94.0e-1872.46Gamma-aminobutyrate transaminase POP2 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7TEC71.2e-1769.44DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
KAA0035428.14.68e-41100.00uncharacterized protein E6C27_scaffold285G00470 [Cucumis melo var. makuwa] >TYK2... [more]
KAA0057443.11.52e-2972.22uncharacterized protein E6C27_scaffold280G003210 [Cucumis melo var. makuwa] >TYK... [more]
KAA0040564.11.67e-2574.65uncharacterized protein E6C27_scaffold262G001340 [Cucumis melo var. makuwa] >TYK... [more]
KAA0054789.11.44e-2467.12uncharacterized protein E6C27_scaffold437G00740 [Cucumis melo var. makuwa][more]
TYK16299.12.53e-2472.46gamma-aminobutyrate transaminase POP2 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0009510.1IVF0009510.1mRNA