IVF0009407 (gene) Melon (IVF77) v1

Overview
NameIVF0009407
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr05: 2680678 .. 2681240 (-)
RNA-Seq ExpressionIVF0009407
SyntenyIVF0009407
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CATCCTCACATTTCTCTTTCAGATCACCGTAGTCGTGATAAACGGTTGAAAGGTGGCTAGAAGCACGATCATAACGGTTAGTTGGAGCAAGTGATGAATGGTCAGATGGTGGCTTGAAGCATGGTCATCGAAGGGGGTGATGAACACTCGGACAGAGCCCCAAGTGCGGGAGAGAGAGGGAGGGAAGAAGGAAGAAGCATGCGGGAGAAAGAGAGGGAAGAAGGCAGTGAGAGTGGGTGGGGGTGCGGGGGTAGTGCTACCTCAGCTTATTGCATAAGCCAAAGGTTAGTATTGAATTTATTGTTTTCAAAATTTGGGTCATACGACAGTAACACAATGCAGACTTGGGTCATACAACAGCAACACAATGCAGATTGGATCATCTGTACAAAAAAAACTCATAAACTACAATCCGTTAGCCTATTTCAGTTTTTGAAAATCCATCATCTGATATGTCTTCTCGTTTCCTTTTATTTCTTCGTGAAGGAGGGTGGCTCATCTGTTGGGACAAAAAGGAAGGAATGGAGAGACAACGATGCAAATGGTTGCATCTGAATTATTGA

mRNA sequence

CATCCTCACATTTCTCTTTCAGATCACCGTAGTCGTGATAAACGGTTGAAAGGTGGCTAGAAGCACGATCATAACGGTTAGTTGGAGCAAGTGATGAATGGTCAGATGGTGGCTTGAAGCATGGTCATCGAAGGGGGTGATGAACACTCGGACAGAGCCCCAAGTGCGGGAGAGAGAGGGAGGGAAGAAGGAAGAAGCATGCGGGAGAAAGAGAGGGAAGAAGGCAGTGAGAGTGGGAGGGTGGCTCATCTGTTGGGACAAAAAGGAAGGAATGGAGAGACAACGATGCAAATGGTTGCATCTGAATTATTGA

Coding sequence (CDS)

ATGGTCAGATGGTGGCTTGAAGCATGGTCATCGAAGGGGGTGATGAACACTCGGACAGAGCCCCAAGTGCGGGAGAGAGAGGGAGGGAAGAAGGAAGAAGCATGCGGGAGAAAGAGAGGGAAGAAGGCAGTGAGAGTGGGAGGGTGGCTCATCTGTTGGGACAAAAAGGAAGGAATGGAGAGACAACGATGCAAATGGTTGCATCTGAATTATTGA

Protein sequence

MVRWWLEAWSSKGVMNTRTEPQVREREGGKKEEACGRKRGKKAVRVGGWLICWDKKEGMERQRCKWLHLNY
Homology
[Close]
BLAST of IVF0009407 vs. ExPASy TrEMBL
Match: A0A0A0KDV2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G409960 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.2e-11
Identity = 42/61 (68.85%), Postives = 46/61 (75.41%), Query Frame = 0 

Query: 15 MNTRTEPQVREREGGKKEEACGRKRGKKAVRV-----GGWLICWDKKEGMERQRCKWLHL 71
          MNTRTE QVREREGGKK+E+ G   G   +RV      GWLIC DKK+GMERQRCKWLHL
Sbjct: 1  MNTRTESQVREREGGKKDESVG--WGGCCLRVLHKSKEGWLICRDKKDGMERQRCKWLHL 59

[Close]
BLAST of IVF0009407 vs. NCBI nr
Match: KGN47890.1 (hypothetical protein Csa_003777 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 9.04e-17
Identity = 42/61 (68.85%), Postives = 46/61 (75.41%), Query Frame = 0 

Query: 15 MNTRTEPQVREREGGKKEEACGRKRGKKAVRV-----GGWLICWDKKEGMERQRCKWLHL 70
          MNTRTE QVREREGGKK+E+ G   G   +RV      GWLIC DKK+GMERQRCKWLHL
Sbjct: 1  MNTRTESQVREREGGKKDESVGW--GGCCLRVLHKSKEGWLICRDKKDGMERQRCKWLHL 59

The following BLAST results are available for this feature:
BLAST of IVF0009407 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0009407 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDV21.2e-1168.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G409960 PE=4 SV=1[more]
BLAST of IVF0009407 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47890.19.04e-1768.85hypothetical protein Csa_003777 [Cucumis sativus][more]
BLAST of IVF0009407 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0009407.1IVF0009407.1mRNA