IVF0009372 (gene) Melon (IVF77) v1

Overview


Name	IVF0009372
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr04: 14418449 .. 14418880 (+)
RNA-Seq Expression	IVF0009372
Synteny	IVF0009372

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACCTCATTGAAGTTAAGGTCAAAGTTAGATATAACTACGCAGGATTTGTGCCAGCATCCGTTCTTATCTCTGATGATCAAGGAGTAGAATATGTTGTATACATTGTTCCTCCACCTGATGGTAGGTGGTTTGTGGAAAGGAATGTTAGTTTCCATGGTTCTTTCAAAACTAAAGCAACTGATGAATTTGATGAACACAATCCTCAAGCTAAAGCATATTCCTTTGTCCGAATTCATGCAGTGCCATTGGAAACAACCAAGTTTGAAACGAGAACCAAATCTGTTAAGTTTGACTGGCCATCTGATTTGGATCCCCCACAAACCAAGAAAGACAGCTCGTCTGATTTAGAATATGACCCCTTTGATCAACAAATCTGTGATAGAAGGAAAGAGAAAGGGAAAGCAATTATGTCCATTAATGAATAG

mRNA sequence

ATGGAAAACCTCATTGAAGTTAAGGTCAAAGTTAGATATAACTACGCAGGATTTGTGCCAGCATCCGTTCTTATCTCTGATGATCAAGGAGTAGAATATGTTGTATACATTGTTCCTCCACCTGATGGTAGGTGGTTTGTGGAAAGGAATGTTAGTTTCCATGGTTCTTTCAAAACTAAAGCAACTGATGAATTTGATGAACACAATCCTCAAGCTAAAGCATATTCCTTTGTCCGAATTCATGCAGTGCCATTGGAAACAACCAAGTTTGAAACGAGAACCAAATCTGTTAAGTTTGACTGGCCATCTGATTTGGATCCCCCACAAACCAAGAAAGACAGCTCGTCTGATTTAGAATATGACCCCTTTGATCAACAAATCTGTGATAGAAGGAAAGAGAAAGGGAAAGCAATTATGTCCATTAATGAATAG

Coding sequence (CDS)

ATGGAAAACCTCATTGAAGTTAAGGTCAAAGTTAGATATAACTACGCAGGATTTGTGCCAGCATCCGTTCTTATCTCTGATGATCAAGGAGTAGAATATGTTGTATACATTGTTCCTCCACCTGATGGTAGGTGGTTTGTGGAAAGGAATGTTAGTTTCCATGGTTCTTTCAAAACTAAAGCAACTGATGAATTTGATGAACACAATCCTCAAGCTAAAGCATATTCCTTTGTCCGAATTCATGCAGTGCCATTGGAAACAACCAAGTTTGAAACGAGAACCAAATCTGTTAAGTTTGACTGGCCATCTGATTTGGATCCCCCACAAACCAAGAAAGACAGCTCGTCTGATTTAGAATATGACCCCTTTGATCAACAAATCTGTGATAGAAGGAAAGAGAAAGGGAAAGCAATTATGTCCATTAATGAATAG

Protein sequence

MENLIEVKVKVRYNYAGFVPASVLISDDQGVEYVVYIVPPPDGRWFVERNVSFHGSFKTKATDEFDEHNPQAKAYSFVRIHAVPLETTKFETRTKSVKFDWPSDLDPPQTKKDSSSDLEYDPFDQQICDRRKEKGKAIMSINE

Homology

[Close]

BLAST of IVF0009372 vs. ExPASy TrEMBL
Match: A0A5A7U652 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G00010 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.6e-76
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MENLIEVKVKVRYNYAGFVPASVLISDDQGVEYVVYIVPPPDGRWFVERNVSFHGSFKTK 60
           MENLIEVKVKVRYNYAGFVPASVLISDDQGVEYVVYIVPPPDGRWFVERNVSFHGSFKTK
Sbjct: 50  MENLIEVKVKVRYNYAGFVPASVLISDDQGVEYVVYIVPPPDGRWFVERNVSFHGSFKTK 109

Query: 61  ATDEFDEHNPQAKAYSFVRIHAVPLETTKFETRTKSVKFDWPSDLDPPQTKKDSSSDLEY 120
           ATDEFDEHNPQAKAYSFVRIHAVPLETTKFETRTKSVKFDWPSDLDPPQTKKDSSSDLEY
Sbjct: 110 ATDEFDEHNPQAKAYSFVRIHAVPLETTKFETRTKSVKFDWPSDLDPPQTKKDSSSDLEY 169

Query: 121 DPFDQQICDRRKEKGKAIMSINE 144
           DPFDQQICDRRKEKGKAIMSINE
Sbjct: 170 DPFDQQICDRRKEKGKAIMSINE 192

[Close]

BLAST of IVF0009372 vs. ExPASy TrEMBL
Match: A0A5D3DAB2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00150 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.6e-76
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MENLIEVKVKVRYNYAGFVPASVLISDDQGVEYVVYIVPPPDGRWFVERNVSFHGSFKTK 60
           MENLIEVKVKVRYNYAGFVPASVLISDDQGVEYVVYIVPPPDGRWFVERNVSFHGSFKTK
Sbjct: 174 MENLIEVKVKVRYNYAGFVPASVLISDDQGVEYVVYIVPPPDGRWFVERNVSFHGSFKTK 233

Query: 61  ATDEFDEHNPQAKAYSFVRIHAVPLETTKFETRTKSVKFDWPSDLDPPQTKKDSSSDLEY 120
           ATDEFDEHNPQAKAYSFVRIHAVPLETTKFETRTKSVKFDWPSDLDPPQTKKDSSSDLEY
Sbjct: 234 ATDEFDEHNPQAKAYSFVRIHAVPLETTKFETRTKSVKFDWPSDLDPPQTKKDSSSDLEY 293

Query: 121 DPFDQQICDRRKEKGKAIMSINE 144
           DPFDQQICDRRKEKGKAIMSINE
Sbjct: 294 DPFDQQICDRRKEKGKAIMSINE 316

[Close]

BLAST of IVF0009372 vs. ExPASy TrEMBL
Match: A0A5D3BEH7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G001290 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 7.2e-40
Identity = 85/143 (59.44%), Postives = 108/143 (75.52%), Query Frame = 0


Query: 1   MENLIEVKVKVRYNYAGFVPASVLISDDQGVEYVVYIVPPPDGRWFVERNVSFHGSFKTK 60
           MENLI+ +V VRYNY+GFVPAS L  DDQG E+++YIVPP DGRWFVERNV+FHGSF+T+
Sbjct: 38  MENLIDAEVTVRYNYSGFVPASTLYVDDQGKEFIIYIVPPLDGRWFVERNVNFHGSFRTE 97

Query: 61  ATDEFDEHNPQAKAYSFVRIHAVPLETTKFETRTKSVKFDWPSDLDPPQTKKDSSSDLEY 120
           A +EFDEHN +A+A+SF+R H VP    K +    + + D  ++ D    KKDSSSD + 
Sbjct: 98  AANEFDEHNHKAEAFSFIRKHVVPPAIAKNQDGINTQRSDKTTNSDHTLAKKDSSSDSKC 157

Query: 121 DPFDQQICDRRKEKGKAIMSINE 144
           DPFDQ   ++ KEKGKA+MSINE
Sbjct: 158 DPFDQISEEKGKEKGKAVMSINE 180

[Close]

BLAST of IVF0009372 vs. ExPASy TrEMBL
Match: A0A5A7SNW5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00270 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 7.9e-39
Identity = 80/143 (55.94%), Postives = 104/143 (72.73%), Query Frame = 0


Query: 1   MENLIEVKVKVRYNYAGFVPASVLISDDQGVEYVVYIVPPPDGRWFVERNVSFHGSFKTK 60
           ME LI+ K+KVRYNY GFVPAS++I+DDQG  +++  VPPP  RWFVER V  HGSFK+K
Sbjct: 142 MEKLIDAKIKVRYNYTGFVPASIMITDDQGDNFIITTVPPPKARWFVERYVRVHGSFKSK 201

Query: 61  ATDEFDEHNPQAKAYSFVRIHAVPLETTKFETRTKSVKFDWPSDLDPPQTKKDSSSDLEY 120
           A +EFDEHNP A+ Y++    A+P  TTK       +  D  S  +  Q KK++SS+ EY
Sbjct: 202 AANEFDEHNPSAEVYTYNDFQAIPQGTTKSRGDYSYLNSDKHSISNHTQAKKNNSSEFEY 261

Query: 121 DPFDQQICDRRKEKGKAIMSINE 144
           DPFDQQ+C++RKEKGKAI+ IN+
Sbjct: 262 DPFDQQLCEKRKEKGKAILIIND 284

[Close]

BLAST of IVF0009372 vs. ExPASy TrEMBL
Match: A0A5D3DFM9 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold173G00270 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 2.0e-37
Identity = 80/143 (55.94%), Postives = 104/143 (72.73%), Query Frame = 0


Query: 1   MENLIEVKVKVRYNYAGFVPASVLISDDQGVEYVVYIVPPPDGRWFVERNVSFHGSFKTK 60
           ME LI+ K+KVRYNY GFVPASVLI+D+QG  +++  VPP   RW VERNV  HG+FKTK
Sbjct: 266 MEKLIDAKIKVRYNYIGFVPASVLITDNQGENFILTTVPPTKARWLVERNVRVHGTFKTK 325

Query: 61  ATDEFDEHNPQAKAYSFVRIHAVPLETTKFETRTKSVKFDWPSDLDPPQTKKDSSSDLEY 120
           A DEFD+HNP A+AY++    A+PLE+T+       +  D  S  +  Q KK++SS+ EY
Sbjct: 326 AADEFDQHNPLAEAYTYNGFQAIPLESTRTRGDYSFLNSDKHSVSNHTQAKKNNSSESEY 385

Query: 121 DPFDQQICDRRKEKGKAIMSINE 144
           DPFDQQ+ +RRKEKGK I+ IN+
Sbjct: 386 DPFDQQLSERRKEKGKVILLIND 408

[Close]

BLAST of IVF0009372 vs. NCBI nr
Match: KAA0050754.1 (hypothetical protein E6C27_scaffold404G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 295 bits (755), Expect = 3.96e-100
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MENLIEVKVKVRYNYAGFVPASVLISDDQGVEYVVYIVPPPDGRWFVERNVSFHGSFKTK 60
           MENLIEVKVKVRYNYAGFVPASVLISDDQGVEYVVYIVPPPDGRWFVERNVSFHGSFKTK
Sbjct: 50  MENLIEVKVKVRYNYAGFVPASVLISDDQGVEYVVYIVPPPDGRWFVERNVSFHGSFKTK 109

Query: 61  ATDEFDEHNPQAKAYSFVRIHAVPLETTKFETRTKSVKFDWPSDLDPPQTKKDSSSDLEY 120
           ATDEFDEHNPQAKAYSFVRIHAVPLETTKFETRTKSVKFDWPSDLDPPQTKKDSSSDLEY
Sbjct: 110 ATDEFDEHNPQAKAYSFVRIHAVPLETTKFETRTKSVKFDWPSDLDPPQTKKDSSSDLEY 169

Query: 121 DPFDQQICDRRKEKGKAIMSINE 143
           DPFDQQICDRRKEKGKAIMSINE
Sbjct: 170 DPFDQQICDRRKEKGKAIMSINE 192

[Close]

BLAST of IVF0009372 vs. NCBI nr
Match: TYK20448.1 (uncharacterized protein E5676_scaffold237G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 295 bits (755), Expect = 2.60e-98
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MENLIEVKVKVRYNYAGFVPASVLISDDQGVEYVVYIVPPPDGRWFVERNVSFHGSFKTK 60
           MENLIEVKVKVRYNYAGFVPASVLISDDQGVEYVVYIVPPPDGRWFVERNVSFHGSFKTK
Sbjct: 174 MENLIEVKVKVRYNYAGFVPASVLISDDQGVEYVVYIVPPPDGRWFVERNVSFHGSFKTK 233

Query: 61  ATDEFDEHNPQAKAYSFVRIHAVPLETTKFETRTKSVKFDWPSDLDPPQTKKDSSSDLEY 120
           ATDEFDEHNPQAKAYSFVRIHAVPLETTKFETRTKSVKFDWPSDLDPPQTKKDSSSDLEY
Sbjct: 234 ATDEFDEHNPQAKAYSFVRIHAVPLETTKFETRTKSVKFDWPSDLDPPQTKKDSSSDLEY 293

Query: 121 DPFDQQICDRRKEKGKAIMSINE 143
           DPFDQQICDRRKEKGKAIMSINE
Sbjct: 294 DPFDQQICDRRKEKGKAIMSINE 316

[Close]

BLAST of IVF0009372 vs. NCBI nr
Match: TYJ97061.1 (hypothetical protein E5676_scaffold506G001290 [Cucumis melo var. makuwa])

HSP 1 Score: 173 bits (439), Expect = 6.13e-50
Identity = 85/143 (59.44%), Postives = 108/143 (75.52%), Query Frame = 0


Query: 1   MENLIEVKVKVRYNYAGFVPASVLISDDQGVEYVVYIVPPPDGRWFVERNVSFHGSFKTK 60
           MENLI+ +V VRYNY+GFVPAS L  DDQG E+++YIVPP DGRWFVERNV+FHGSF+T+
Sbjct: 38  MENLIDAEVTVRYNYSGFVPASTLYVDDQGKEFIIYIVPPLDGRWFVERNVNFHGSFRTE 97

Query: 61  ATDEFDEHNPQAKAYSFVRIHAVPLETTKFETRTKSVKFDWPSDLDPPQTKKDSSSDLEY 120
           A +EFDEHN +A+A+SF+R H VP    K +    + + D  ++ D    KKDSSSD + 
Sbjct: 98  AANEFDEHNHKAEAFSFIRKHVVPPAIAKNQDGINTQRSDKTTNSDHTLAKKDSSSDSKC 157

Query: 121 DPFDQQICDRRKEKGKAIMSINE 143
           DPFDQ   ++ KEKGKA+MSINE
Sbjct: 158 DPFDQISEEKGKEKGKAVMSINE 180

[Close]

BLAST of IVF0009372 vs. NCBI nr
Match: KAA0026125.1 (hypothetical protein E6C27_scaffold19G00740 [Cucumis melo var. makuwa] >TYK11585.1 hypothetical protein E5676_scaffold263G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 170 bits (430), Expect = 2.48e-48
Identity = 80/143 (55.94%), Postives = 104/143 (72.73%), Query Frame = 0


Query: 1   MENLIEVKVKVRYNYAGFVPASVLISDDQGVEYVVYIVPPPDGRWFVERNVSFHGSFKTK 60
           ME LI+ K+KVRYNY GFVPAS++I+DDQG  +++  VPPP  RWFVER V  HGSFK+K
Sbjct: 142 MEKLIDAKIKVRYNYTGFVPASIMITDDQGDNFIITTVPPPKARWFVERYVRVHGSFKSK 201

Query: 61  ATDEFDEHNPQAKAYSFVRIHAVPLETTKFETRTKSVKFDWPSDLDPPQTKKDSSSDLEY 120
           A +EFDEHNP A+ Y++    A+P  TTK       +  D  S  +  Q KK++SS+ EY
Sbjct: 202 AANEFDEHNPSAEVYTYNDFQAIPQGTTKSRGDYSYLNSDKHSISNHTQAKKNNSSEFEY 261

Query: 121 DPFDQQICDRRKEKGKAIMSINE 143
           DPFDQQ+C++RKEKGKAI+ IN+
Sbjct: 262 DPFDQQLCEKRKEKGKAILIIND 284

[Close]

BLAST of IVF0009372 vs. NCBI nr
Match: KAA0040385.1 (hypothetical protein E6C27_scaffold3125G00090 [Cucumis melo var. makuwa] >TYK04052.1 hypothetical protein E5676_scaffold460G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 159 bits (403), Expect = 6.60e-47
Identity = 75/143 (52.45%), Postives = 102/143 (71.33%), Query Frame = 0


Query: 1   MENLIEVKVKVRYNYAGFVPASVLISDDQGVEYVVYIVPPPDGRWFVERNVSFHGSFKTK 60
           M+ LI+ K+KVRYNY GFVPAS++I+DDQG  +++  VPPP+ RWFVER+V  HGSFK+K
Sbjct: 16  MKKLIDAKIKVRYNYTGFVPASIVITDDQGDNFIINTVPPPEARWFVERSVRVHGSFKSK 75

Query: 61  ATDEFDEHNPQAKAYSFVRIHAVPLETTKFETRTKSVKFDWPSDLDPPQTKKDSSSDLEY 120
             D+FDEHNP A+ Y++    A P ETTK       +  D  S  +P Q KK++SS+ EY
Sbjct: 76  TADKFDEHNPLAEVYTYNGFQAAPPETTKSRGDYNYLNSDKHSISNPTQAKKNNSSESEY 135

Query: 121 DPFDQQICDRRKEKGKAIMSINE 143
           D FDQQ+ ++RKEK K ++ IN+
Sbjct: 136 DLFDQQLSEKRKEKAKVMLIIND 158

The following BLAST results are available for this feature:

BLAST of IVF0009372 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0009372 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U652	1.6e-76	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DAB2	1.6e-76	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BEH7	7.2e-40	59.44	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SNW5	7.9e-39	55.94	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DFM9	2.0e-37	55.94	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of IVF0009372 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050754.1	3.96e-100	100.00	hypothetical protein E6C27_scaffold404G00010 [Cucumis melo var. makuwa]	[more]
TYK20448.1	2.60e-98	100.00	uncharacterized protein E5676_scaffold237G00150 [Cucumis melo var. makuwa]	[more]
TYJ97061.1	6.13e-50	59.44	hypothetical protein E5676_scaffold506G001290 [Cucumis melo var. makuwa]	[more]
KAA0026125.1	2.48e-48	55.94	hypothetical protein E6C27_scaffold19G00740 [Cucumis melo var. makuwa] >TYK11585...	[more]
KAA0040385.1	6.60e-47	52.45	hypothetical protein E6C27_scaffold3125G00090 [Cucumis melo var. makuwa] >TYK040...	[more]

BLAST of IVF0009372 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0009372.1	IVF0009372.1	mRNA