IVF0009330 (gene) Melon (IVF77) v1

Overview
NameIVF0009330
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionSWIM-type domain-containing protein
Locationchr09: 8571915 .. 8572211 (-)
RNA-Seq ExpressionIVF0009330
SyntenyIVF0009330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTATGAAGACTTTGTTGAGGACTATTATAAAATATCAACTTACACTGCATATTATGCGCCTCAGTTTCAACCTGTACCGGATGAAGATTATTGGATCACACCTACAAGTATGCCTGTCTTACTGCCAGATCCATCGTTGTTGAGAAAATCAGGTAGACCAAAGACTTCACGTTATCACAACGAGATGGATTGGACAGAACAAAGTGCTCAACAACGATGCTCATTCTGTAGCAACCTTGGTCATAACCGACGGAGCTGTACTTTGTTAAGGAGACAGACACCTGATAGTTAG

mRNA sequence

ATGAACTATGAAGACTTTGTTGAGGACTATTATAAAATATCAACTTACACTGCATATTATGCGCCTCAGTTTCAACCTGTACCGGATGAAGATTATTGGATCACACCTACAAGTATGCCTGTCTTACTGCCAGATCCATCGTTGTTGAGAAAATCAGGTAGACCAAAGACTTCACGTTATCACAACGAGATGGATTGGACAGAACAAAGTGCTCAACAACGATGCTCATTCTGTAGCAACCTTGGTCATAACCGACGGAGCTGTACTTTGTTAAGGAGACAGACACCTGATAGTTAG

Coding sequence (CDS)

ATGAACTATGAAGACTTTGTTGAGGACTATTATAAAATATCAACTTACACTGCATATTATGCGCCTCAGTTTCAACCTGTACCGGATGAAGATTATTGGATCACACCTACAAGTATGCCTGTCTTACTGCCAGATCCATCGTTGTTGAGAAAATCAGGTAGACCAAAGACTTCACGTTATCACAACGAGATGGATTGGACAGAACAAAGTGCTCAACAACGATGCTCATTCTGTAGCAACCTTGGTCATAACCGACGGAGCTGTACTTTGTTAAGGAGACAGACACCTGATAGTTAG

Protein sequence

MNYEDFVEDYYKISTYTAYYAPQFQPVPDEDYWITPTSMPVLLPDPSLLRKSGRPKTSRYHNEMDWTEQSAQQRCSFCSNLGHNRRSCTLLRRQTPDS
Homology
[Close]
BLAST of IVF0009330 vs. ExPASy TrEMBL
Match: A0A5D3BJ66 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4012G00010 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.4e-47
Identity = 93/98 (94.90%), Postives = 93/98 (94.90%), Query Frame = 0 

Query: 1  MNYEDFVEDYYKISTYTAYYAPQFQPVPDEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60
          MNYEDFVEDYYKISTY A YAPQFQPVP EDYWITPTSMPVLLPDPSLLRKSGRPKTSRY
Sbjct: 1  MNYEDFVEDYYKISTYAACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60

Query: 61 HNEMDWTEQSAQQRCSFCSNLGHNRRSCTLLRRQTPDS 99
          HNEMDWTEQSAQQRCSFCS LGHNRRSCTLLRRQ PDS
Sbjct: 61 HNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS 98

[Close]
BLAST of IVF0009330 vs. ExPASy TrEMBL
Match: A0A5A7T1X8 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G00510 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.2e-46
Identity = 92/98 (93.88%), Postives = 92/98 (93.88%), Query Frame = 0 

Query: 1   MNYEDFVEDYYKISTYTAYYAPQFQPVPDEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60
           MNYEDFVEDYYKISTY A YA QFQPVP EDYWITPTSMPVLLPDPSLLRKSGRPKTSRY
Sbjct: 543 MNYEDFVEDYYKISTYAACYASQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 602

Query: 61  HNEMDWTEQSAQQRCSFCSNLGHNRRSCTLLRRQTPDS 99
           HNEMDWTEQSAQQRCSFCS LGHNRRSCTLLRRQ PDS
Sbjct: 603 HNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS 640

[Close]
BLAST of IVF0009330 vs. ExPASy TrEMBL
Match: A0A5D3D607 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00150 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.1e-46
Identity = 92/98 (93.88%), Postives = 92/98 (93.88%), Query Frame = 0 

Query: 1  MNYEDFVEDYYKISTYTAYYAPQFQPVPDEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60
          MNYEDFVEDYYKISTY A YAPQFQPVP EDYWITPTSMPVLLPDPSLLRKSGRPKTSRY
Sbjct: 1  MNYEDFVEDYYKISTYVACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60

Query: 61 HNEMDWTEQSAQQRCSFCSNLGHNRRSCTLLRRQTPDS 99
          HNEMDWTEQSAQQRCSF S LGHNRRSCTLLRRQ PDS
Sbjct: 61 HNEMDWTEQSAQQRCSFSSQLGHNRRSCTLLRRQAPDS 98

[Close]
BLAST of IVF0009330 vs. ExPASy TrEMBL
Match: A0A5D3BR89 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00280 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.8e-43
Identity = 87/98 (88.78%), Postives = 88/98 (89.80%), Query Frame = 0 

Query: 1   MNYEDFVEDYYKISTYTAYYAPQFQPVPDEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60
           MNYEDFVEDYYKI TY A YAPQFQPVP EDYWITPTSMPVLL DPSLLRKSGR K+SRY
Sbjct: 330 MNYEDFVEDYYKILTYVACYAPQFQPVPHEDYWITPTSMPVLLSDPSLLRKSGRSKSSRY 389

Query: 61  HNEMDWTEQSAQQRCSFCSNLGHNRRSCTLLRRQTPDS 99
           HNEMDWTEQSAQQRCSFCS LGHNR  CTLLRRQ PDS
Sbjct: 390 HNEMDWTEQSAQQRCSFCSQLGHNRWRCTLLRRQAPDS 427

[Close]
BLAST of IVF0009330 vs. ExPASy TrEMBL
Match: A0A5A7TD93 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00780 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.8e-43
Identity = 87/98 (88.78%), Postives = 88/98 (89.80%), Query Frame = 0 

Query: 1   MNYEDFVEDYYKISTYTAYYAPQFQPVPDEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60
           MNYEDFVEDYYKI TY A YAPQFQPVP EDYWITPTSMPVLL DPSLLRKSGR K+SRY
Sbjct: 418 MNYEDFVEDYYKILTYVACYAPQFQPVPHEDYWITPTSMPVLLSDPSLLRKSGRSKSSRY 477

Query: 61  HNEMDWTEQSAQQRCSFCSNLGHNRRSCTLLRRQTPDS 99
           HNEMDWTEQSAQQRCSFCS LGHNR  CTLLRRQ PDS
Sbjct: 478 HNEMDWTEQSAQQRCSFCSQLGHNRWRCTLLRRQAPDS 515

[Close]
BLAST of IVF0009330 vs. NCBI nr
Match: TYJ98405.1 (uncharacterized protein E5676_scaffold4012G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 196 bits (498), Expect = 4.17e-63
Identity = 93/98 (94.90%), Postives = 93/98 (94.90%), Query Frame = 0 

Query: 1  MNYEDFVEDYYKISTYTAYYAPQFQPVPDEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60
          MNYEDFVEDYYKISTY A YAPQFQPVP EDYWITPTSMPVLLPDPSLLRKSGRPKTSRY
Sbjct: 1  MNYEDFVEDYYKISTYAACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60

Query: 61 HNEMDWTEQSAQQRCSFCSNLGHNRRSCTLLRRQTPDS 98
          HNEMDWTEQSAQQRCSFCS LGHNRRSCTLLRRQ PDS
Sbjct: 61 HNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS 98

[Close]
BLAST of IVF0009330 vs. NCBI nr
Match: TYK18933.1 (uncharacterized protein E5676_scaffold418G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 192 bits (488), Expect = 1.40e-61
Identity = 92/98 (93.88%), Postives = 92/98 (93.88%), Query Frame = 0 

Query: 1  MNYEDFVEDYYKISTYTAYYAPQFQPVPDEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60
          MNYEDFVEDYYKISTY A YAPQFQPVP EDYWITPTSMPVLLPDPSLLRKSGRPKTSRY
Sbjct: 1  MNYEDFVEDYYKISTYVACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60

Query: 61 HNEMDWTEQSAQQRCSFCSNLGHNRRSCTLLRRQTPDS 98
          HNEMDWTEQSAQQRCSF S LGHNRRSCTLLRRQ PDS
Sbjct: 61 HNEMDWTEQSAQQRCSFSSQLGHNRRSCTLLRRQAPDS 98

[Close]
BLAST of IVF0009330 vs. NCBI nr
Match: KAA0036768.1 (uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 193 bits (490), Expect = 5.83e-56
Identity = 92/98 (93.88%), Postives = 92/98 (93.88%), Query Frame = 0 

Query: 1   MNYEDFVEDYYKISTYTAYYAPQFQPVPDEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60
           MNYEDFVEDYYKISTY A YA QFQPVP EDYWITPTSMPVLLPDPSLLRKSGRPKTSRY
Sbjct: 543 MNYEDFVEDYYKISTYAACYASQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 602

Query: 61  HNEMDWTEQSAQQRCSFCSNLGHNRRSCTLLRRQTPDS 98
           HNEMDWTEQSAQQRCSFCS LGHNRRSCTLLRRQ PDS
Sbjct: 603 HNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS 640

[Close]
BLAST of IVF0009330 vs. NCBI nr
Match: TYK01705.1 (uncharacterized protein E5676_scaffold775G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 181 bits (459), Expect = 4.29e-53
Identity = 87/98 (88.78%), Postives = 88/98 (89.80%), Query Frame = 0 

Query: 1   MNYEDFVEDYYKISTYTAYYAPQFQPVPDEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60
           MNYEDFVEDYYKI TY A YAPQFQPVP EDYWITPTSMPVLL DPSLLRKSGR K+SRY
Sbjct: 330 MNYEDFVEDYYKILTYVACYAPQFQPVPHEDYWITPTSMPVLLSDPSLLRKSGRSKSSRY 389

Query: 61  HNEMDWTEQSAQQRCSFCSNLGHNRRSCTLLRRQTPDS 98
           HNEMDWTEQSAQQRCSFCS LGHNR  CTLLRRQ PDS
Sbjct: 390 HNEMDWTEQSAQQRCSFCSQLGHNRWRCTLLRRQAPDS 427

[Close]
BLAST of IVF0009330 vs. NCBI nr
Match: XP_008457265.1 (PREDICTED: uncharacterized protein LOC103496991 [Cucumis melo])

HSP 1 Score: 181 bits (459), Expect = 7.37e-53
Identity = 87/98 (88.78%), Postives = 88/98 (89.80%), Query Frame = 0 

Query: 1   MNYEDFVEDYYKISTYTAYYAPQFQPVPDEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60
           MNYEDFVEDYYKI TY A YAPQFQPVP EDYWITPTSMPVLL DPSLLRKSGR K+SRY
Sbjct: 355 MNYEDFVEDYYKILTYVACYAPQFQPVPHEDYWITPTSMPVLLSDPSLLRKSGRSKSSRY 414

Query: 61  HNEMDWTEQSAQQRCSFCSNLGHNRRSCTLLRRQTPDS 98
           HNEMDWTEQSAQQRCSFCS LGHNR  CTLLRRQ PDS
Sbjct: 415 HNEMDWTEQSAQQRCSFCSQLGHNRWRCTLLRRQAPDS 452

The following BLAST results are available for this feature:
BLAST of IVF0009330 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0009330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BJ661.4e-4794.90Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T1X81.2e-4693.88SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5D3D6072.1e-4693.88Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BR894.8e-4388.78SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7TD934.8e-4388.78SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
BLAST of IVF0009330 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ98405.14.17e-6394.90uncharacterized protein E5676_scaffold4012G00010 [Cucumis melo var. makuwa][more]
TYK18933.11.40e-6193.88uncharacterized protein E5676_scaffold418G00150 [Cucumis melo var. makuwa][more]
KAA0036768.15.83e-5693.88uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa][more]
TYK01705.14.29e-5388.78uncharacterized protein E5676_scaffold775G00280 [Cucumis melo var. makuwa][more]
XP_008457265.17.37e-5388.78PREDICTED: uncharacterized protein LOC103496991 [Cucumis melo][more]
BLAST of IVF0009330 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0009330.1IVF0009330.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010073 meristem maintenance
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding