IVF0009328 (gene) Melon (IVF77) v1

Overview


Name	IVF0009328
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Zf-CCHC domain-containing protein
Location	chr11: 20667005 .. 20667163 (+)
RNA-Seq Expression	IVF0009328
Synteny	IVF0009328

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAAGAGAAGTGTAAGCTTTTCAAGGTAGATTTGAGGACAGTCATCCGAATGCCAGTGACGACAAGCATGGTTTGGTTGGACTTCTCTAAGTTAGTGGAAGCAGCCATGCGTGTCGAGAGTGCATTAGCTGAGGAAAAGAAGAGTTCCAAATAA

mRNA sequence

ATGGATGAAGAGAAGTGTAAGCTTTTCAAGGTAGATTTGAGGACAGTCATCCGAATGCCAGTGACGACAAGCATGGTTTGGTTGGACTTCTCTAAGTTAGTGGAAGCAGCCATGCGTGTCGAGAGTGCATTAGCTGAGGAAAAGAAGAGTTCCAAATAA

Coding sequence (CDS)

ATGGATGAAGAGAAGTGTAAGCTTTTCAAGGTAGATTTGAGGACAGTCATCCGAATGCCAGTGACGACAAGCATGGTTTGGTTGGACTTCTCTAAGTTAGTGGAAGCAGCCATGCGTGTCGAGAGTGCATTAGCTGAGGAAAAGAAGAGTTCCAAATAA

Protein sequence

MDEEKCKLFKVDLRTVIRMPVTTSMVWLDFSKLVEAAMRVESALAEEKKSSK

Homology

[Close]

BLAST of IVF0009328 vs. ExPASy TrEMBL
Match: A0A5A7UGQ4 (Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G001980 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.8e-18
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MDEEKCKLFKVDLRTVIRMPVTTSMVWLDFSKLVEAAMRVESALAEEKKSSK 53
          MDEEKCKLFKVDLRTVIRMPVTTSMVWLDFSKLVEAAMRVESALAEEKKSSK
Sbjct: 12 MDEEKCKLFKVDLRTVIRMPVTTSMVWLDFSKLVEAAMRVESALAEEKKSSK 63

[Close]

BLAST of IVF0009328 vs. ExPASy TrEMBL
Match: A0A5A7UNY4 (A-kinase anchor protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G001510 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.9e-08
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 2   DEEKCKLFKVDLRTVIRMPVTTSMVWLDFSKLVEAAMRVESALAEEKKSSK 53
           ++EK K FK  LRT IRMPVT+S  WL  S+LVEAAMRVES LA+EKKSSK
Sbjct: 97  EKEKSKRFKEGLRTTIRMPVTSSTNWLTISRLVEAAMRVESTLAKEKKSSK 147

[Close]

BLAST of IVF0009328 vs. ExPASy TrEMBL
Match: A0A5D3DW18 (A-kinase anchor protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00250 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.7e-08
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 2   DEEKCKLFKVDLRTVIRMPVTTSMVWLDFSKLVEAAMRVESALAEEKKSSK 53
           ++EK K FK  LRT IRMPVT+S  WL  S+LVEAAMRVES LA+EKKSSK
Sbjct: 97  EKEKSKHFKEGLRTTIRMPVTSSTNWLTISRLVEAAMRVESTLAKEKKSSK 147

[Close]

BLAST of IVF0009328 vs. ExPASy TrEMBL
Match: A0A5A7VGM1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00210 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.6e-05
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 4   EKCKLFKVDLRTVIRMPVTTSMVWLDFSKLVEAAMRVESALAEEKKSSK 53
           ++CK F+  LRT I++PVT S  WL+FSK+VEA MRVE+ L  EKKS K
Sbjct: 85  DRCKHFEEGLRTTIQVPVTASANWLNFSKMVEATMRVENTLVGEKKSFK 133

[Close]

BLAST of IVF0009328 vs. ExPASy TrEMBL
Match: A0A5A7V7B0 (Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2406G00240 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-04
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 2   DEEKCKLFKVDLRTVIRMPVTTSMVWLDFSKLVEAAMRVESALAEEKKS 51
           ++EKCK F+  LR  IR+P+     W  FSKLVE  MR ESALAEEKKS
Sbjct: 79  EDEKCKRFEDGLRMAIRVPMMACTNWPTFSKLVEVTMRFESALAEEKKS 127

[Close]

BLAST of IVF0009328 vs. NCBI nr
Match: KAA0054440.1 (zf-CCHC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 8.88e-26
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MDEEKCKLFKVDLRTVIRMPVTTSMVWLDFSKLVEAAMRVESALAEEKKSSK 52
          MDEEKCKLFKVDLRTVIRMPVTTSMVWLDFSKLVEAAMRVESALAEEKKSSK
Sbjct: 12 MDEEKCKLFKVDLRTVIRMPVTTSMVWLDFSKLVEAAMRVESALAEEKKSSK 63

[Close]

BLAST of IVF0009328 vs. NCBI nr
Match: KAA0056006.1 (A-kinase anchor protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 2.72e-11
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 2   DEEKCKLFKVDLRTVIRMPVTTSMVWLDFSKLVEAAMRVESALAEEKKSSK 52
           ++EK K FK  LRT IRMPVT+S  WL  S+LVEAAMRVES LA+EKKSSK
Sbjct: 97  EKEKSKRFKEGLRTTIRMPVTSSTNWLTISRLVEAAMRVESTLAKEKKSSK 147

[Close]

BLAST of IVF0009328 vs. NCBI nr
Match: TYK27694.1 (A-kinase anchor protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 3.82e-11
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 2   DEEKCKLFKVDLRTVIRMPVTTSMVWLDFSKLVEAAMRVESALAEEKKSSK 52
           ++EK K FK  LRT IRMPVT+S  WL  S+LVEAAMRVES LA+EKKSSK
Sbjct: 97  EKEKSKHFKEGLRTTIRMPVTSSTNWLTISRLVEAAMRVESTLAKEKKSSK 147

[Close]

BLAST of IVF0009328 vs. NCBI nr
Match: KAA0065476.1 (uncharacterized protein E6C27_scaffold17G001750 [Cucumis melo var. makuwa] >TYK08718.1 uncharacterized protein E5676_scaffold76G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 5.07e-08
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 4   EKCKLFKVDLRTVIRMPVTTSMVWLDFSKLVEAAMRVESALAEEKKSSK 52
           ++CK F+  LRT I++PVT S  WL+FSK+VEA MRVE+ L  EKKS K
Sbjct: 85  DRCKHFEEGLRTTIQVPVTASANWLNFSKMVEATMRVENTLVGEKKSFK 133

[Close]

BLAST of IVF0009328 vs. NCBI nr
Match: KAA0062867.1 (zf-CCHC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 2.85e-07
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 2   DEEKCKLFKVDLRTVIRMPVTTSMVWLDFSKLVEAAMRVESALAEEKKS 50
           ++EKCK F+  LR  IR+P+     W  FSKLVE  MR ESALAEEKKS
Sbjct: 79  EDEKCKRFEDGLRMAIRVPMMACTNWPTFSKLVEVTMRFESALAEEKKS 127

The following BLAST results are available for this feature:

BLAST of IVF0009328 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0009328 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UGQ4	4.8e-18	100.00	Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UNY4	5.9e-08	70.59	A-kinase anchor protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A5D3DW18	7.7e-08	70.59	A-kinase anchor protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5A7VGM1	3.6e-05	59.18	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V7B0	1.4e-04	59.18	Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of IVF0009328 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054440.1	8.88e-26	100.00	zf-CCHC domain-containing protein [Cucumis melo var. makuwa]	[more]
KAA0056006.1	2.72e-11	70.59	A-kinase anchor protein 12 [Cucumis melo var. makuwa]	[more]
TYK27694.1	3.82e-11	70.59	A-kinase anchor protein 12 [Cucumis melo var. makuwa]	[more]
KAA0065476.1	5.07e-08	59.18	uncharacterized protein E6C27_scaffold17G001750 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0062867.1	2.85e-07	59.18	zf-CCHC domain-containing protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0009328 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0009328.1	IVF0009328.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0016301	kinase activity