IVF0009303 (gene) Melon (IVF77) v1

Overview
NameIVF0009303
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionHemolysin expression modulating protein
Locationchr12: 12239585 .. 12239815 (+)
RNA-Seq ExpressionIVF0009303
SyntenyIVF0009303
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGACGCAATCCAAGCGATCATCATCTTCAATGCAGTGCAAATGATCATCGTCTTCAATGCAGTGTAGACGATCATCCTCTTCAATGCAGCACACATGATGATCATCTTCAATGCGGCACAGTCGATCTTCATCTTCAATGCGGTGCAGTCAAGTCCATTTCTCTCTTGGTTGATTTCTATCTGAAAGTACTACGACGTGTCGAACTCCGGACAAGCATCGTTCTGTGA

mRNA sequence

ATGCGACGCAATCCAAGCGATCATCATCTTCAATGCAGTGCAAATGATCATCGTCTTCAATGCAGTGTAGACGATCATCCTCTTCAATGCAGCACACATGATGATCATCTTCAATGCGGCACAGTCGATCTTCATCTTCAATGCGGTGCAGTCAAGTCCATTTCTCTCTTGGTTGATTTCTATCTGAAAGTACTACGACGTGTCGAACTCCGGACAAGCATCGTTCTGTGA

Coding sequence (CDS)

ATGCGACGCAATCCAAGCGATCATCATCTTCAATGCAGTGCAAATGATCATCGTCTTCAATGCAGTGTAGACGATCATCCTCTTCAATGCAGCACACATGATGATCATCTTCAATGCGGCACAGTCGATCTTCATCTTCAATGCGGTGCAGTCAAGTCCATTTCTCTCTTGGTTGATTTCTATCTGAAAGTACTACGACGTGTCGAACTCCGGACAAGCATCGTTCTGTGA

Protein sequence

MRRNPSDHHLQCSANDHRLQCSVDDHPLQCSTHDDHLQCGTVDLHLQCGAVKSISLLVDFYLKVLRRVELRTSIVL
Homology
BLAST of IVF0009303 vs. ExPASy TrEMBL
Match: A0A5D3BML3 (Hemolysin expression modulating protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00080 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.6e-08
Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 0

Query: 7   DHHLQCSANDHRLQCSVDDHPLQCSTHDDHLQCGTVDLHLQCGAVKSISLLV 59
           +HHLQC A DH LQC   +H L+CST D HLQCG  D HLQC   ++I + +
Sbjct: 195 NHHLQCGAKDHHLQCGAGNHHLKCSTGDHHLQCGAGDHHLQCSEAETIVIFI 246

BLAST of IVF0009303 vs. NCBI nr
Match: TYK00348.1 (hemolysin expression modulating protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 5.96e-11
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 0

Query: 8   HHLQCSANDHRLQCSVDDHPLQCSTHDDHLQCGTVDLHLQCGAVKSISLLV 58
           HHLQC A DH LQC   +H L+CST D HLQCG  D HLQC   ++I + +
Sbjct: 196 HHLQCGAKDHHLQCGAGNHHLKCSTGDHHLQCGAGDHHLQCSEAETIVIFI 246

BLAST of IVF0009303 vs. NCBI nr
Match: GBL86344.1 (hypothetical protein AVEN_164528-1 [Araneus ventricosus])

HSP 1 Score: 48.9 bits (115), Expect = 3.81e-05
Identity = 22/40 (55.00%), Postives = 25/40 (62.50%), Query Frame = 0

Query: 10 LQCSANDHRLQCSVDDHPLQCSTHDDHLQCGTVDLHLQCG 49
          LQC  +  RLQCS+D   LQC  H   LQCG   +HLQCG
Sbjct: 18 LQCGLDTMRLQCSLDTMRLQCGLHTMQLQCGLDTMHLQCG 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BML36.6e-0853.85Hemolysin expression modulating protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
Match NameE-valueIdentityDescription
TYK00348.15.96e-1154.90hemolysin expression modulating protein [Cucumis melo var. makuwa][more]
GBL86344.13.81e-0555.00hypothetical protein AVEN_164528-1 [Araneus ventricosus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0009303.1IVF0009303.1mRNA