IVF0009284 (gene) Melon (IVF77) v1

Overview


Name	IVF0009284
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr09: 15719691 .. 15721504 (-)
RNA-Seq Expression	IVF0009284
Synteny	IVF0009284

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTAAGTTGGTATAATTGACTTATCAAACGACAAGGGCCCTTTATTTTCTCTCCACCACTTTTCCTTCTTTTTTTTCCTCTCCACGTTTGTCTTTCCCATCTTTTTCTCTTCATTTTTTTTTCGTTCAAATGAGAATTCAATCATGGACTTGCAATATCGAGGAACACCAAGATGCTTCCTCCCCTATCTTCGAAATGTTTAGCTCTCGGAACAAGATCTCCATCGTTGAACTAAACGATGACAACTTTCTTCTGTGGAGATTTCAAGTTGTTACAGCATTGGAAGGTTATGATTTAGAAAAATACCTTGATTCTTCCTTAGAACCCCCATCTCAGTTTTTCAATGTCAAAGTCGAAACACCCCAGCCACCCTTGGCGTGTCTTCTCACAAACTATCCAAACTCCAAACCCAGAATTCAAGAAGTGAAAACCCAAGATCAATTAATTTCTTCATGGTTGCTCGGTTTGATGAATGAGAATATTCTCAACCAAATGCTCAACTGCAACTCCACAAAGGATATATGGGCCAATCTTCATGGAATTTATTTTGCACGATGTCTTGCTCAAGCAATGCAATTAAAGAGTAAGCTTCAAAACATAAAGAAAAGAGTCGTGCCTTTGAAAGAATATTTCATGAAAATCCAACAATGTGTTGATGCTCTGGCTTCAGTCGGTAAACCTACACCCTCTGATGATCATATTTTATATATTCTTGCTGGATTAGGACCAGAATATGAATCTATGATATCTGATTTCTGCCTGTACTGTTCTCCCTCCATACAAGACATTACTTCACTATTACTTACTAAGGAATCCTGTATTAAGTGTACCATCAAAGCAGAAAGCTCTCTGTCATCGGCTAACTTGGATGCTCAAGGGTTGGAAAAAGACAGTGATCAATCGATTAAATAACATAACACTTATCGGTCGAATACATACAAACCAGTGAGGGCATGGTGGAGGTCGATCTAATCGTGGTGGCGGATTCAATAGAAATAAACCTCAATGCCAAATTTGCACCAAATTTGGACATACTGTTGATCGTTGATTTAGTCGTTACCTACCTCCTTGAACAGCATCCGCTTAGTCGGGTTGTTCCCCTAGTTTTTCTCCAATACCTACTAATCATTCTGGTTTTTCTCCTATGACTGCTATGGTTGCATCTCATGATTTGAATATGGACAGCAATTGGTATCCTGACTCTGGCGCCACAAATCACCTCACAAATAATTTCAACAACCAATTTATTGGATTTAAGTATAGAGGTGAAAGACAGGTTTATGATGCAAATGGTTCAGGTTTGCAAATTCTTCACTATGGTTCTTCTTCTTTTCCATCTTTCATAGACTCCAATCGATCCTTGGTTTTAAATAATTTACTCCATGTTCCAACTATCGCCAAAAACTTAATTAATGTCTCTCAGTTTGCCAAAGATAATGATTTTTTTTTTTAATTTCAGCCATCTGTTTGCTATGTGAAGGATTATCACACTGGCCAAACACTTCTCCAAGGACTGCTCCATGGAAGTCTTTATTGATTCAACATCACCCTTCTCATTACTATCCCACGAAGAATATGTCACAATCTAGTTCTCCTAAAGTGTTGAGCGTTGTCTCACCATCAATTTATCCCTTTTCTCATAGTCATCAGGTTGATATTTAGCATAGGCGTTTAGGCCATACTAATATTTCTGTTGTTAAAACTGTTCTTCAACAGTCCAAATATCTCGGTTTGAATATAAATAAATTACAATTTTTTGATACTTGCGCTTTGGGTAAAACCCATGCTTTTCCTTTCTCTCCTCTACATTCTCA

mRNA sequence

CTTAAGTTGGTATAATTGACTTATCAAACGACAAGGGCCCTTTATTTTCTCTCCACCACTTTTCCTTCTTTTTTTTCCTCTCCACGTTTGTCTTTCCCATCTTTTTCTCTTCATTTTTTTTTCGTTCAAATGAGAATTCAATCATGGACTTGCAATATCGAGGAACACCAAGATGCTTCCTCCCCTATCTTCGAAATGTTTAGCTCTCGGAACAAGATCTCCATCGTTGAACTAAACGATGACAACTTTCTTCTGTGGAGATTTCAAGTTGTTACAGCATTGGAAGGTTATGATTTAGAAAAATACCTTGATTCTTCCTTAGAACCCCCATCTCAGTTTTTCAATGTCAAAGTCGAAACACCCCAGCCACCCTTGGCGTGTCTTCTCACAAACTATCCAAACTCCAAACCCAGAATTCAAGAAGTGAAAACCCAAGATCAATTAATTTCTTCATGGTTGCTCGGTTTGATGAATGAGAATATTCTCAACCAAATGCTCAACTGCAACTCCACAAAGGATATATGGGCCAATCTTCATGGAATTTATTTTGCACGATGTCTTGCTCAAGCAATGCAATTAAAGAGTAAGCTTCAAAACATAAAGAAAAGAGTCGTGCCTTTGAAAGAATATTTCATGAAAATCCAACAATGTGTTGATGCTCTGGCTTCAGTCGGTAAACCTACACCCTCTGATGATCATATTTTATATATTCTTGCTGGATTAGGACCAGAATATGAATCTATGATATCTGATTTCTGCCTGTACTGTTCTCCCTCCATACAAGACATTACTTCACTATTACTTACTAAGGAATCCTGTATTAAGTGTACCATCAAAGCAGAAAGCTCTCTGTCATCGGCTAACTTGGATGCTCAAGGGTTGGAAAAAGACAGTGATCAATCGATTAAATAACATAACACTTATCGGTCGAATACATACAAACCAGTGAGGGCATGGTGGAGGTCGATCTAATCGTGGTGGCGGATTCAATAGAAATAAACCTCAATGCCAAATTTGCACCAAATTTGGACATACTGTTGATCGTTGATTTAGTCGTTACCTACCTCCTTGAACAGCATCCGCTTAGTCGGGTTGTTCCCCTAGTTTTTCTCCAATACCTACTAATCATTCTGGTTTTTCTCCTATGACTGCTATGGTTGCATCTCATGATTTGAATATGGACAGCAATTGGTATCCTGACTCTGGCGCCACAAATCACCTCACAAATAATTTCAACAACCAATTTATTGGATTTAAGTATAGAGGTGAAAGACAGGTTTATGATGCAAATGGTTCAGCCATCTGTTTGCTATGTGAAGGATTATCACACTGGCCAAACACTTCTCCAAGGACTGCTCCATGGAAGTCTTTATTGATTCAACATCACCCTTCTCATTACTATCCCACGAAGAATATGTCACAATCTAGTTCTCCTAAAGTGTTGAGCGTTGTCTCACCATCAATTTATCCCTTTTCTCATAGTCATCAGGTTGATATTTAGCATAGGCGTTTAGGCCATACTAATATTTCTGTTGTTAAAACTGTTCTTCAACAGTCCAAATATCTCGGTTTGAATATAAATAAATTACAATTTTTTGATACTTGCGCTTTGGGTAAAACCCATGCTTTTCCTTTCTCTCCTCTACATTCTCA

Coding sequence (CDS)

ATGAGAATTCAATCATGGACTTGCAATATCGAGGAACACCAAGATGCTTCCTCCCCTATCTTCGAAATGTTTAGCTCTCGGAACAAGATCTCCATCGTTGAACTAAACGATGACAACTTTCTTCTGTGGAGATTTCAAGTTGTTACAGCATTGGAAGGTTATGATTTAGAAAAATACCTTGATTCTTCCTTAGAACCCCCATCTCAGTTTTTCAATGTCAAAGTCGAAACACCCCAGCCACCCTTGGCGTGTCTTCTCACAAACTATCCAAACTCCAAACCCAGAATTCAAGAAGTGAAAACCCAAGATCAATTAATTTCTTCATGGTTGCTCGGTTTGATGAATGAGAATATTCTCAACCAAATGCTCAACTGCAACTCCACAAAGGATATATGGGCCAATCTTCATGGAATTTATTTTGCACGATGTCTTGCTCAAGCAATGCAATTAAAGAGTAAGCTTCAAAACATAAAGAAAAGAGTCGTGCCTTTGAAAGAATATTTCATGAAAATCCAACAATGTGTTGATGCTCTGGCTTCAGTCGGTAAACCTACACCCTCTGATGATCATATTTTATATATTCTTGCTGGATTAGGACCAGAATATGAATCTATGATATCTGATTTCTGCCTGTACTGTTCTCCCTCCATACAAGACATTACTTCACTATTACTTACTAAGGAATCCTGTATTAAGTGTACCATCAAAGCAGAAAGCTCTCTGTCATCGGCTAACTTGGATGCTCAAGGGTTGGAAAAAGACAGTGATCAATCGATTAAATAA

Protein sequence

MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNENILNQMLNCNSTKDIWANLHGIYFARCLAQAMQLKSKLQNIKKRVVPLKEYFMKIQQCVDALASVGKPTPSDDHILYILAGLGPEYESMISDFCLYCSPSIQDITSLLLTKESCIKCTIKAESSLSSANLDAQGLEKDSDQSIK

Homology

[Close]

BLAST of IVF0009284 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.5e-13
Identity = 58/219 (26.48%), Postives = 91/219 (41.55%), Query Frame = 0


Query: 28  NKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLT 87
           N  ++ +L   N+L+W  QV    +GY+L  +LD S             T  PP      
Sbjct: 19  NMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGS-------------TTMPPATIGTD 78

Query: 88  NYPNSKPRIQEVKTQDQLISSWLLGLMNENILNQMLNCNSTKDIWANLHGIYFARCLAQA 147
             P   P     K QD+LI S +LG ++ ++   +    +   IW  L  IY        
Sbjct: 79  AAPRVNPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHV 138

Query: 148 MQLKSKLQNIKKRVVPLKEYFMKIQQCVDALASVGKPTPSDDHILYILAGLGPEYESMIS 207
            QL+++L+   K    + +Y   +    D LA +GKP   D+ +  +L  L  EY+ +I 
Sbjct: 139 TQLRTQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVID 198

Query: 208 DFCLY-CSPSIQDITSLLLTKESCIKCTIKAESSLSSAN 246
                   P++ +I   LL  ES I     A     +AN
Sbjct: 199 QIAAKDTPPTLTEIHERLLNHESKILAVSSATVIPITAN 224

[Close]

BLAST of IVF0009284 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-09
Identity = 54/220 (24.55%), Postives = 87/220 (39.55%), Query Frame = 0


Query: 28  NKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLT 87
           N  ++ +L   N+L+W  QV    +GY+L  +LD S             TP PP      
Sbjct: 19  NMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGS-------------TPMPPATIGTD 78

Query: 88  NYPNSKPRIQEVKTQDQLISSWLLGLMNENILNQMLNCNSTKDIWANLHGIYFARCLAQA 147
             P   P     + QD+LI S +LG ++ ++   +    +   IW  L  IY        
Sbjct: 79  AVPRVNPDYTRWRRQDKLIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHV 138

Query: 148 MQLKSKLQNIKKRVVPLKEYFMKIQQCVDALASVGKPTPSDDHILYILAGLGPEYESMIS 207
            QL+   +                    D LA +GKP   D+ +  +L  L  +Y+ +I 
Sbjct: 139 TQLRFITR-------------------FDQLALLGKPMDHDEQVERVLENLPDDYKPVID 198

Query: 208 DFCLY-CSPSIQDITSLLLTKESCIKCTIKAESSLSSANL 247
                   PS+ +I   L+ +ES +     AE    +AN+
Sbjct: 199 QIAAKDTPPSLTEIHERLINRESKLLALNSAEVVPITANV 206

[Close]

BLAST of IVF0009284 vs. ExPASy TrEMBL
Match: A0A5A7VGA1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00100 PE=4 SV=1)

HSP 1 Score: 522.3 bits (1344), Expect = 1.1e-144
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 1   MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYL 60
           MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYL
Sbjct: 1   MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYL 60

Query: 61  DSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNENILN 120
           DSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNENILN
Sbjct: 61  DSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNENILN 120

Query: 121 QMLNCNSTKDIWANLHGIYFARCLAQAMQLKSKLQNIKKRVVPLKEYFMKIQQCVDALAS 180
           QMLNCNSTKDIWANLHGIYFARCLAQAMQLKSKLQNIKKRVVPLKEYFMKIQQCVDALAS
Sbjct: 121 QMLNCNSTKDIWANLHGIYFARCLAQAMQLKSKLQNIKKRVVPLKEYFMKIQQCVDALAS 180

Query: 181 VGKPTPSDDHILYILAGLGPEYESMISDFCLYCSPSIQDITSLLLTKESCIKCTIKAESS 240
           VGKPTPSDDHILYILAGLGPEYESMISDFCLYCSPSIQDITSLLLTKESCIKCTIKAESS
Sbjct: 181 VGKPTPSDDHILYILAGLGPEYESMISDFCLYCSPSIQDITSLLLTKESCIKCTIKAESS 240

Query: 241 LSSANLDAQGLEKDSDQSIK 261
           LSSANLDAQGLEKDSDQSIK
Sbjct: 241 LSSANLDAQGLEKDSDQSIK 260

[Close]

BLAST of IVF0009284 vs. ExPASy TrEMBL
Match: A0A1S3CQ70 (uncharacterized protein LOC103502987 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502987 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 2.3e-81
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYL 60
           MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYL
Sbjct: 1   MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYL 60

Query: 61  DSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNENILN 120
           DSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNE+ILN
Sbjct: 61  DSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNEDILN 120

Query: 121 QMLNCNSTKDIWANLHGIYFARCLAQAMQLKS 153
           QMLNCNSTKDIWANLHGIYFARCLAQAMQLK+
Sbjct: 121 QMLNCNSTKDIWANLHGIYFARCLAQAMQLKT 152

[Close]

BLAST of IVF0009284 vs. ExPASy TrEMBL
Match: A0A1S3CQ60 (uncharacterized protein LOC103502987 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502987 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 2.3e-81
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYL 60
           MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYL
Sbjct: 1   MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYL 60

Query: 61  DSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNENILN 120
           DSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNE+ILN
Sbjct: 61  DSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNEDILN 120

Query: 121 QMLNCNSTKDIWANLHGIYFARCLAQAMQLKS 153
           QMLNCNSTKDIWANLHGIYFARCLAQAMQLK+
Sbjct: 121 QMLNCNSTKDIWANLHGIYFARCLAQAMQLKT 152

[Close]

BLAST of IVF0009284 vs. ExPASy TrEMBL
Match: A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 9.9e-64
Identity = 138/250 (55.20%), Postives = 180/250 (72.00%), Query Frame = 0


Query: 12  EHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFF 71
           E+ +ASSPI ++F S NKIS+V+LNDD FLLW+FQ++TALE YDLE +L+S  EPPS++ 
Sbjct: 11  ENTEASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSKYL 70

Query: 72  NVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNENILNQMLNCNSTKDI 131
            +  E+     +   T  PN  P  +  K QD+LISSWLLG M+E ILNQML+C S K+I
Sbjct: 71  -ISTESS----SASATGTPN--PAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEI 130

Query: 132 WANLHGIYFARCLAQAMQLKSKLQNIKKRVVPLKEYFMKIQQCVDALASVGKPTPSDDHI 191
           W  L GI+ +R LAQAMQ K+KL NIKK  +PLKEYF+KI QCVDALAS+ KP  SDDHI
Sbjct: 131 WETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHI 190

Query: 192 LYILAGLGPEYESMISDFCLYC-SPSIQDITSLLLTKESCIKCTIKAESSLSSANLDAQG 251
           LYILAGLG +Y+SMIS       SPS+Q++ SLLLT+ES  +  + +E++L S N+  Q 
Sbjct: 191 LYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKLISETALPSVNIVTQT 250

Query: 252 LEKDSDQSIK 261
            EK ++  I+
Sbjct: 251 TEKGAESYIR 253

[Close]

BLAST of IVF0009284 vs. ExPASy TrEMBL
Match: A0A5D3CH97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00040 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 9.9e-64
Identity = 138/250 (55.20%), Postives = 180/250 (72.00%), Query Frame = 0


Query: 12  EHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFF 71
           E+ +ASSPI ++F S NKIS+V+LNDD FLLW+FQ++TALE YDLE +L+S  EPPS++ 
Sbjct: 11  ENTEASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSKYL 70

Query: 72  NVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNENILNQMLNCNSTKDI 131
            +  E+     +   T  PN  P  +  K QD+LISSWLLG M+E ILNQML+C S K+I
Sbjct: 71  -ISTESS----SASATGTPN--PAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEI 130

Query: 132 WANLHGIYFARCLAQAMQLKSKLQNIKKRVVPLKEYFMKIQQCVDALASVGKPTPSDDHI 191
           W  L GI+ +R LAQAMQ K+KL NIKK  +PLKEYF+KI QCVDALAS+ KP  SDDHI
Sbjct: 131 WETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHI 190

Query: 192 LYILAGLGPEYESMISDFCLYC-SPSIQDITSLLLTKESCIKCTIKAESSLSSANLDAQG 251
           LYILAGLG +Y+SMIS       SPS+Q++ SLLLT+ES  +  + +E++L S N+  Q 
Sbjct: 191 LYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKLISETALPSVNIVTQT 250

Query: 252 LEKDSDQSIK 261
            EK ++  I+
Sbjct: 251 TEKGAESYIR 253

[Close]

BLAST of IVF0009284 vs. NCBI nr
Match: KAA0066107.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK15146.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 521 bits (1343), Expect = 1.23e-186
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 1   MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYL 60
           MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYL
Sbjct: 1   MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYL 60

Query: 61  DSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNENILN 120
           DSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNENILN
Sbjct: 61  DSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNENILN 120

Query: 121 QMLNCNSTKDIWANLHGIYFARCLAQAMQLKSKLQNIKKRVVPLKEYFMKIQQCVDALAS 180
           QMLNCNSTKDIWANLHGIYFARCLAQAMQLKSKLQNIKKRVVPLKEYFMKIQQCVDALAS
Sbjct: 121 QMLNCNSTKDIWANLHGIYFARCLAQAMQLKSKLQNIKKRVVPLKEYFMKIQQCVDALAS 180

Query: 181 VGKPTPSDDHILYILAGLGPEYESMISDFCLYCSPSIQDITSLLLTKESCIKCTIKAESS 240
           VGKPTPSDDHILYILAGLGPEYESMISDFCLYCSPSIQDITSLLLTKESCIKCTIKAESS
Sbjct: 181 VGKPTPSDDHILYILAGLGPEYESMISDFCLYCSPSIQDITSLLLTKESCIKCTIKAESS 240

Query: 241 LSSANLDAQGLEKDSDQSIK 260
           LSSANLDAQGLEKDSDQSIK
Sbjct: 241 LSSANLDAQGLEKDSDQSIK 260

[Close]

BLAST of IVF0009284 vs. NCBI nr
Match: XP_008465355.1 (PREDICTED: uncharacterized protein LOC103502987 isoform X2 [Cucumis melo])

HSP 1 Score: 312 bits (800), Expect = 2.08e-103
Identity = 150/156 (96.15%), Postives = 154/156 (98.72%), Query Frame = 0


Query: 1   MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYL 60
           MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYL
Sbjct: 1   MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYL 60

Query: 61  DSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNENILN 120
           DSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNE+ILN
Sbjct: 61  DSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNEDILN 120

Query: 121 QMLNCNSTKDIWANLHGIYFARCLAQAMQLKSKLQN 156
           QMLNCNSTKDIWANLHGIYFARCLAQAMQLK+ + +
Sbjct: 121 QMLNCNSTKDIWANLHGIYFARCLAQAMQLKTMVAS 156

[Close]

BLAST of IVF0009284 vs. NCBI nr
Match: XP_008465350.1 (PREDICTED: uncharacterized protein LOC103502987 isoform X1 [Cucumis melo])

HSP 1 Score: 312 bits (800), Expect = 2.62e-103
Identity = 150/156 (96.15%), Postives = 154/156 (98.72%), Query Frame = 0


Query: 1   MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYL 60
           MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYL
Sbjct: 1   MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYL 60

Query: 61  DSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNENILN 120
           DSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNE+ILN
Sbjct: 61  DSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNEDILN 120

Query: 121 QMLNCNSTKDIWANLHGIYFARCLAQAMQLKSKLQN 156
           QMLNCNSTKDIWANLHGIYFARCLAQAMQLK+ + +
Sbjct: 121 QMLNCNSTKDIWANLHGIYFARCLAQAMQLKTMVAS 156

[Close]

BLAST of IVF0009284 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 253 bits (646), Expect = 3.26e-74
Identity = 138/250 (55.20%), Postives = 180/250 (72.00%), Query Frame = 0


Query: 12  EHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFF 71
           E+ +ASSPI ++F S NKIS+V+LNDD FLLW+FQ++TALE YDLE +L+S  EPPS++ 
Sbjct: 11  ENTEASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSKYL 70

Query: 72  NVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNENILNQMLNCNSTKDI 131
            +  E+     +   T  PN  P  +  K QD+LISSWLLG M+E ILNQML+C S K+I
Sbjct: 71  -ISTESS----SASATGTPN--PAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEI 130

Query: 132 WANLHGIYFARCLAQAMQLKSKLQNIKKRVVPLKEYFMKIQQCVDALASVGKPTPSDDHI 191
           W  L GI+ +R LAQAMQ K+KL NIKK  +PLKEYF+KI QCVDALAS+ KP  SDDHI
Sbjct: 131 WETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHI 190

Query: 192 LYILAGLGPEYESMISDFCLYC-SPSIQDITSLLLTKESCIKCTIKAESSLSSANLDAQG 251
           LYILAGLG +Y+SMIS       SPS+Q++ SLLLT+ES  +  + +E++L S N+  Q 
Sbjct: 191 LYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKLISETALPSVNIVTQT 250

Query: 252 LEKDSDQSIK 260
            EK ++  I+
Sbjct: 251 TEKGAESYIR 253

[Close]

BLAST of IVF0009284 vs. NCBI nr
Match: TYK10642.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 253 bits (646), Expect = 3.26e-74
Identity = 138/250 (55.20%), Postives = 180/250 (72.00%), Query Frame = 0


Query: 12  EHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFF 71
           E+ +ASSPI ++F S NKIS+V+LNDD FLLW+FQ++TALE YDLE +L+S  EPPS++ 
Sbjct: 11  ENTEASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSKYL 70

Query: 72  NVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNENILNQMLNCNSTKDI 131
            +  E+     +   T  PN  P  +  K QD+LISSWLLG M+E ILNQML+C S K+I
Sbjct: 71  -ISTESS----SASATGTPN--PAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEI 130

Query: 132 WANLHGIYFARCLAQAMQLKSKLQNIKKRVVPLKEYFMKIQQCVDALASVGKPTPSDDHI 191
           W  L GI+ +R LAQAMQ K+KL NIKK  +PLKEYF+KI QCVDALAS+ KP  SDDHI
Sbjct: 131 WETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHI 190

Query: 192 LYILAGLGPEYESMISDFCLYC-SPSIQDITSLLLTKESCIKCTIKAESSLSSANLDAQG 251
           LYILAGLG +Y+SMIS       SPS+Q++ SLLLT+ES  +  + +E++L S N+  Q 
Sbjct: 191 LYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKLISETALPSVNIVTQT 250

Query: 252 LEKDSDQSIK 260
            EK ++  I+
Sbjct: 251 TEKGAESYIR 253

[Close]

BLAST of IVF0009284 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 2.1e-05
Identity = 32/137 (23.36%), Postives = 71/137 (51.82%), Query Frame = 0


Query: 102 QDQLISSWLLG-LMNENILNQMLNCNSTKDIWANLHGIYFARCLAQAMQLKSKLQNIKKR 161
           +D ++   L G L  +      +  ++++DIW  +   +     A+A++L S+L+     
Sbjct: 68  RDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIG 127

Query: 162 VVPLKEYFMKIQQCVDALASVGKPTPSDDHILYILAGLGPEYESMISDF-CLYCSPSIQD 221
            + + +Y+ K+++  D+L +V  P    + ++Y+L GL P+++++I+        PS  D
Sbjct: 128 DMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDD 187

Query: 222 ITSLLLTKESCIKCTIK 237
             ++L  +E  +K  IK
Sbjct: 188 AATMLQEEEDRLKRAIK 204

The following BLAST results are available for this feature:

BLAST of IVF0009284 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	4.5e-13	26.48	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.0e-09	24.55	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of IVF0009284 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VGA1	1.1e-144	100.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A1S3CQ70	2.3e-81	98.68	uncharacterized protein LOC103502987 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3CQ60	2.3e-81	98.68	uncharacterized protein LOC103502987 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7U233	9.9e-64	55.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CH97	9.9e-64	55.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of IVF0009284 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066107.1	1.23e-186	100.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
XP_008465355.1	2.08e-103	96.15	PREDICTED: uncharacterized protein LOC103502987 isoform X2 [Cucumis melo]	[more]
XP_008465350.1	2.62e-103	96.15	PREDICTED: uncharacterized protein LOC103502987 isoform X1 [Cucumis melo]	[more]
KAA0048297.1	3.26e-74	55.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK10642.1	3.26e-74	55.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of IVF0009284 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G34070.1	2.1e-05	23.36	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 251..260
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 100..227 e-value: 1.3E-15 score: 57.4
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 35..245
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 35..245

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0009284.1	IVF0009284.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:0071704	organic substance metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005488	binding