IVF0009234 (gene) Melon (IVF77) v1

Overview


Name	IVF0009234
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr05: 22545972 .. 22546160 (-)
RNA-Seq Expression	IVF0009234
Synteny	IVF0009234

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGATTAAACGACATAAATAAAGAATTGAAAAATAAGAAAGATGATGGAAAGAAATCGCAGAAAAGAAAAAGAGAAAAGAAGAAAGACGAAATCGGAGGGGAAGATGGGGAAGACGAAATAACAGGAGGAAAACGAATCGCGAGGAAGAATAGAAAGATGGAAGGGCAAACCTGGAATATTTAA

mRNA sequence

ATGGGAAGATTAAACGACATAAATAAAGAATTGAAAAATAAGAAAGATGATGGAAAGAAATCGCAGAAAAGAAAAAGAGAAAAGAAGAAAGACGAAATCGGAGGGGAAGATGGGGAAGACGAAATAACAGGAGGAAAACGAATCGCGAGGAAGAATAGAAAGATGGAAGGGCAAACCTGGAATATTTAA

Coding sequence (CDS)

ATGGGAAGATTAAACGACATAAATAAAGAATTGAAAAATAAGAAAGATGATGGAAAGAAATCGCAGAAAAGAAAAAGAGAAAAGAAGAAAGACGAAATCGGAGGGGAAGATGGGGAAGACGAAATAACAGGAGGAAAACGAATCGCGAGGAAGAATAGAAAGATGGAAGGGCAAACCTGGAATATTTAA

Protein sequence

MGRLNDINKELKNKKDDGKKSQKRKREKKKDEIGGEDGEDEITGGKRIARKNRKMEGQTWNI

Homology

[Close]

BLAST of IVF0009234 vs. ExPASy TrEMBL
Match: A0A5A7SVQ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00530 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 8.3e-09
Identity = 33/44 (75.00%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 19 KKSQKRKREKKKDEIGGEDGEDEITGGKRIARKNRKMEGQTWNI 63
          ++++K+++E KKDEI GEDG+DEITGG+RIARKNRKMEGQTWNI
Sbjct: 3  ERNRKKEKENKKDEIAGEDGKDEITGGRRIARKNRKMEGQTWNI 46

[Close]

BLAST of IVF0009234 vs. NCBI nr
Match: KAA0033511.1 (hypothetical protein E6C27_scaffold261G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 9.84e-12
Identity = 33/42 (78.57%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 21 SQKRKREKKKDEIGGEDGEDEITGGKRIARKNRKMEGQTWNI 62
          ++K+++E KKDEI GEDG+DEITGG+RIARKNRKMEGQTWNI
Sbjct: 5  NRKKEKENKKDEIAGEDGKDEITGGRRIARKNRKMEGQTWNI 46

The following BLAST results are available for this feature:

BLAST of IVF0009234 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0009234 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SVQ8	8.3e-09	75.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0009234 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033511.1	9.84e-12	78.57	hypothetical protein E6C27_scaffold261G00530 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0009234 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 4..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0009234.1	IVF0009234.1	mRNA