IVF0009176 (gene) Melon (IVF77) v1

Overview
NameIVF0009176
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr12: 15304768 .. 15304920 (+)
RNA-Seq ExpressionIVF0009176
SyntenyIVF0009176
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGCGATGACGTTGACGACGTGGACGAGGGGGACTCCGCGTACGCGACGACCACCACTTCAGAAGACATCCAATACATTGAGATGACAAACGAGTGGTCTCAGTGGCGCAACGAACTAACTGAATCGATGTTCACAGATTGGTAG

mRNA sequence

ATGACATATTGCGATGACGTTGACGACGTGGACGAGGGGGACTCCGCGTACGCGACGACCACCACTTCAGAAGACATCCAATACATTGAGATGACAAACGAGTGGTCTCAGTGGCGCAACGAACTAACTGAATCGATGTTCACAGATTGGTAG

Coding sequence (CDS)

ATGACATATTGCGATGACGTTGACGACGTGGACGAGGGGGACTCCGCGTACGCGACGACCACCACTTCAGAAGACATCCAATACATTGAGATGACAAACGAGTGGTCTCAGTGGCGCAACGAACTAACTGAATCGATGTTCACAGATTGGTAG

Protein sequence

MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW
Homology
BLAST of IVF0009176 vs. ExPASy TrEMBL
Match: A0A5D3CLZ7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001290 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.2e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0

Query: 1  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTD 50
          MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTD
Sbjct: 1  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTD 49

BLAST of IVF0009176 vs. ExPASy TrEMBL
Match: A0A5D3BDZ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00280 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.9e-17
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 0

Query: 1  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW 51
          MTYCDD+DDVDEGDSAYATTT SEDI YIE TNEWSQWR+EL ESMFTDW
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDW 50

BLAST of IVF0009176 vs. ExPASy TrEMBL
Match: A0A5A7T0Z8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00710 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.1e-17
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 0

Query: 1   MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW 51
           MTYCDDVDD DEGDS YATTTTSEDIQYIE TNEWSQWR+EL ESMFTDW
Sbjct: 280 MTYCDDVDDGDEGDSMYATTTTSEDIQYIETTNEWSQWRDELVESMFTDW 329

BLAST of IVF0009176 vs. ExPASy TrEMBL
Match: A0A5A7VGD3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00510 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 6.6e-17
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 0

Query: 1   MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW 51
           MTYCD+VDDVDEGDSAYATTTT EDI YIEMTNEWSQW N+L ESMFTDW
Sbjct: 103 MTYCDEVDDVDEGDSAYATTTTIEDIHYIEMTNEWSQWHNKLAESMFTDW 152

BLAST of IVF0009176 vs. ExPASy TrEMBL
Match: A0A5D3BQ46 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G001550 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 6.6e-17
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 0

Query: 1  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW 51
          MTYCDDVDDVD+GDS YAT TTSEDIQYIE TNEWSQWR+EL ESMFTDW
Sbjct: 1  MTYCDDVDDVDKGDSTYATATTSEDIQYIETTNEWSQWRDELAESMFTDW 50

BLAST of IVF0009176 vs. NCBI nr
Match: KAA0054316.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK12352.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 101 bits (252), Expect = 1.05e-24
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0

Query: 1  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTD 49
          MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTD
Sbjct: 1  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTD 49

BLAST of IVF0009176 vs. NCBI nr
Match: KAA0054051.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 2.24e-24
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 0

Query: 1  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW 50
          MTYCDD+DDVDEGDSAYATTT SEDI YIE TNEWSQWR+EL ESMFTDW
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDW 50

BLAST of IVF0009176 vs. NCBI nr
Match: KAA0066137.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15182.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 7.13e-23
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 0

Query: 1   MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW 50
           MTYCD+VDDVDEGDSAYATTTT EDI YIEMTNEWSQW N+L ESMFTDW
Sbjct: 103 MTYCDEVDDVDEGDSAYATTTTIEDIHYIEMTNEWSQWHNKLAESMFTDW 152

BLAST of IVF0009176 vs. NCBI nr
Match: TYK22655.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 3.07e-22
Identity = 43/50 (86.00%), Postives = 44/50 (88.00%), Query Frame = 0

Query: 1  MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW 50
          MTYCDDVDD DE DS YATTT SEDIQYIE TNEWSQWR+EL ESMFTDW
Sbjct: 1  MTYCDDVDDGDEEDSMYATTTASEDIQYIETTNEWSQWRDELVESMFTDW 50

BLAST of IVF0009176 vs. NCBI nr
Match: KAA0035723.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK30822.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 4.10e-22
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = 0

Query: 1   MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW 50
           MTYCDDVD+VDEGDS YA TT +EDI YIEMTNEWSQWR+EL ESMFTDW
Sbjct: 51  MTYCDDVDEVDEGDSTYAMTTVTEDIYYIEMTNEWSQWRDELAESMFTDW 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CLZ74.2e-19100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BDZ03.9e-1788.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T0Z85.1e-1790.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VGD36.6e-1788.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BQ466.6e-1788.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0054316.11.05e-24100.00retrotransposon protein [Cucumis melo var. makuwa] >TYK12352.1 retrotransposon p... [more]
KAA0054051.12.24e-2488.00retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon p... [more]
KAA0066137.17.13e-2388.00retrotransposon protein [Cucumis melo var. makuwa] >TYK15182.1 retrotransposon p... [more]
TYK22655.13.07e-2286.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0035723.14.10e-2284.00retrotransposon protein [Cucumis melo var. makuwa] >TYK30822.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0009176.1IVF0009176.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding