IVF0009163 (gene) Melon (IVF77) v1

Overview
NameIVF0009163
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr07: 21985070 .. 21985560 (-)
RNA-Seq ExpressionIVF0009163
SyntenyIVF0009163
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTCTTTCTAATTACAAATACAATGAAGAAGATATCATAAAGTGGCTTCAAACAAGGACTCGATGTTTTTTAAGGTTTTATTTGTTGTCATTCTCATAATTACTTCTTCCCAATATGAAGCCTTTGGAAGACATATTTCTGCAGATGCTATTCCTCATTATCGATCTTGTAAGAATCCCAACATTAATCAACATTAATTTGGTCTCAAAATCACCATATTAGACTCAAATTAAATTTTGGAACGACATGTTTCAAAGTTTTTTAGTGTTATATATATGTTCTCATAGTTGTATATATGATTGCAGATCATGAAGATGGTAAAAAGGAGAAGATTAATTCAAGAGTACTTCAACATGTTTCCCAACTTGATGTTCCAAGAAATGGTAACTATGGAGGAAGTGGAGGGGGTCCAACAAGTTAATTAAGACAGCTACTAAATTTATGGTTTATTTTAGGGAAAATTATGTTGTCCAAAAAGTGTCTATGCTACT

mRNA sequence

GCTCTTTCTAATTACAAATACAATGAAGAAGATATCATAAAGTGGCTTCAAACAAGGACTCGATGTTTTTTAAGGTTTTATTTGTTGTCATTCTCATAATTACTTCTTCCCAATATGAAGCCTTTGGAAGACATATTTCTGCAGATGCTATTCCTCATTATCGATCTTATCATGAAGATGGTAAAAAGGAGAAGATTAATTCAAGAGTACTTCAACATGTTTCCCAACTTGATGTTCCAAGAAATGGTAACTATGGAGGAAGTGGAGGGGGTCCAACAAGTTAATTAAGACAGCTACTAAATTTATGGTTTATTTTAGGGAAAATTATGTTGTCCAAAAAGTGTCTATGCTACT

Coding sequence (CDS)

ATGTTTTTTAAGGTTTTATTTGTTGTCATTCTCATAATTACTTCTTCCCAATATGAAGCCTTTGGAAGACATATTTCTGCAGATGCTATTCCTCATTATCGATCTTATCATGAAGATGGTAAAAAGGAGAAGATTAATTCAAGAGTACTTCAACATGTTTCCCAACTTGATGTTCCAAGAAATGGTAACTATGGAGGAAGTGGAGGGGGTCCAACAAGTTAA

Protein sequence

MFFKVLFVVILIITSSQYEAFGRHISADAIPHYRSYHEDGKKEKINSRVLQHVSQLDVPRNGNYGGSGGGPTS
Homology
BLAST of IVF0009163 vs. ExPASy TrEMBL
Match: A0A0A0KUB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017210 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.0e-15
Identity = 52/74 (70.27%), Postives = 57/74 (77.03%), Query Frame = 0

Query: 1  MFFKVLFVVILIITSSQYEAFGRHISADAIPHYRSYHEDGK-KEKINSRVLQHVSQLDVP 60
          M FK LFVVILIITSSQY AFGR   +DAIPHYRS H+D + KEK  SRV +H+SQ D P
Sbjct: 8  MLFKALFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRV-EHLSQTDTP 67

Query: 61 RNGNYGGSGGGPTS 74
          R GNYGG G GPTS
Sbjct: 68 RKGNYGGRGEGPTS 80

BLAST of IVF0009163 vs. NCBI nr
Match: KAE8649130.1 (hypothetical protein Csa_014869 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 1.94e-21
Identity = 52/74 (70.27%), Postives = 57/74 (77.03%), Query Frame = 0

Query: 1   MFFKVLFVVILIITSSQYEAFGRHISADAIPHYRSYHEDGK-KEKINSRVLQHVSQLDVP 60
           M FK LFVVILIITSSQY AFGR   +DAIPHYRS H+D + KEK  SRV +H+SQ D P
Sbjct: 29  MLFKALFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRV-EHLSQTDTP 88

Query: 61  RNGNYGGSGGGPTS 73
           R GNYGG G GPTS
Sbjct: 89  RKGNYGGRGEGPTS 101

BLAST of IVF0009163 vs. NCBI nr
Match: KAG6576807.1 (hypothetical protein SDJN03_24381, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 53.1 bits (126), Expect = 3.58e-07
Identity = 41/73 (56.16%), Postives = 50/73 (68.49%), Query Frame = 0

Query: 1  MFFKVLFVVILIITSSQYEAFGRHISADAIPHYRSYHEDGKKEKINSRVLQHVSQLDVPR 60
          M +KVLF ++LI+ SS   AFGRHI ADA P  RSY+E+ K E I+  +L   SQ DVPR
Sbjct: 8  MLWKVLFAIMLILCSSHM-AFGRHI-ADATPR-RSYNENNK-ESISRALLG--SQTDVPR 67

Query: 61 NGNYGGSGGGPTS 73
           GNYGG  G P+S
Sbjct: 68 RGNYGG--GEPSS 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KUB27.0e-1570.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017210 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAE8649130.11.94e-2170.27hypothetical protein Csa_014869 [Cucumis sativus][more]
KAG6576807.13.58e-0756.16hypothetical protein SDJN03_24381, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0009163.1IVF0009163.1mRNA