IVF0009136 (gene) Melon (IVF77) v1

Overview


Name	IVF0009136
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	serine-rich protein-related
Location	chr02: 15788340 .. 15788756 (-)
RNA-Seq Expression	IVF0009136
Synteny	IVF0009136

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAATGGGATCCCAGCCCAAAATGAGCATCAGCATCCCTTCCACCGCCAAAAGCGCCGGCGATGGGGACGGCGTGGCGGGGCACTCATGTTCATCCAAAGCTCAATGCCTCTGTTCCCCCACCACTCATCCTGGTTCCTTCCGGTGTCGGCTTCACCGTTCCAATTCGTTGCCATGGAGTAGGCAGTCCAAATCCACCGCTGCATCCGCCGACGCCTCTAACACCTCAGATCTCTCTCCAAAGTCAGTTGAATCTGCTTGATTTTTCAATTACTATCTATCGGCCAAAACAACAAATAATGAAACCCTCTGTAAATATTTATATATATGTATTCCTCTCTCTCTCTCTCTCTGTTCTCACTCCACTCTTAAAATTTATTAAAAATCCATGCGTGTGTTTTTGTTTCTATTGCGAT

mRNA sequence

AAAAAATGGGATCCCAGCCCAAAATGAGCATCAGCATCCCTTCCACCGCCAAAAGCGCCGGCGATGGGGACGGCGTGGCGGGGCACTCATGTTCATCCAAAGCTCAATGCCTCTGTTCCCCCACCACTCATCCTGGTTCCTTCCGGTGTCGGCTTCACCGTTCCAATTCGTTGCCATGGAGTAGGCAGTCCAAATCCACCGCTGCATCCGCCGACGCCTCTAACACCTCAGATCTCTCTCCAAAGTCAGTTGAATCTGCTTGATTTTTCAATTACTATCTATCGGCCAAAACAACAAATAATGAAACCCTCTGTAAATATTTATATATATGTATTCCTCTCTCTCTCTCTCTCTGTTCTCACTCCACTCTTAAAATTTATTAAAAATCCATGCGTGTGTTTTTGTTTCTATTGCGAT

Coding sequence (CDS)

ATGGGATCCCAGCCCAAAATGAGCATCAGCATCCCTTCCACCGCCAAAAGCGCCGGCGATGGGGACGGCGTGGCGGGGCACTCATGTTCATCCAAAGCTCAATGCCTCTGTTCCCCCACCACTCATCCTGGTTCCTTCCGGTGTCGGCTTCACCGTTCCAATTCGTTGCCATGGAGTAGGCAGTCCAAATCCACCGCTGCATCCGCCGACGCCTCTAACACCTCAGATCTCTCTCCAAAGTCAGTTGAATCTGCTTGA

Protein sequence

MGSQPKMSISIPSTAKSAGDGDGVAGHSCSSKAQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSTAASADASNTSDLSPKSVESA

Homology

[Close]

BLAST of IVF0009136 vs. ExPASy TrEMBL
Match: A0A5D3BJV5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00570 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.0e-37
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MGSQPKMSISIPSTAKSAGDGDGVAGHSCSSKAQCLCSPTTHPGSFRCRLHRSNSLPWSR 60
          MGSQPKMSISIPSTAKSAGDGDGVAGHSCSSKAQCLCSPTTHPGSFRCRLHRSNSLPWSR
Sbjct: 1  MGSQPKMSISIPSTAKSAGDGDGVAGHSCSSKAQCLCSPTTHPGSFRCRLHRSNSLPWSR 60

Query: 61 QSKSTAASADASNTSDLSPKSVESA 86
          QSKSTAASADASNTSDLSPKSVESA
Sbjct: 61 QSKSTAASADASNTSDLSPKSVESA 85

[Close]

BLAST of IVF0009136 vs. ExPASy TrEMBL
Match: A0A0A0LWJ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369490 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.6e-33
Identity = 80/87 (91.95%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1  MGSQPKMSISIPSTAKSAGDGDGVAG--HSCSSKAQCLCSPTTHPGSFRCRLHRSNSLPW 60
          MGSQ KMSI IPSTAKSAG+GDGV G  HSCSSK QCLCSPTTHPGSFRCRLHRSNSLPW
Sbjct: 1  MGSQAKMSIRIPSTAKSAGEGDGVLGHSHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPW 60

Query: 61 SRQSKSTAASADASNTSDLSPKSVESA 86
          SRQSKSTAASADASNTSDLSPKSVESA
Sbjct: 61 SRQSKSTAASADASNTSDLSPKSVESA 87

[Close]

BLAST of IVF0009136 vs. ExPASy TrEMBL
Match: A0A6A1UK22 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G006893 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.8e-10
Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 9  ISIPSTAKSAGDGDGVAGHSCSSKAQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSTAAS 68
          +S+ +T KS G G+ V G S S K QCLCSPTTH GSFRCRLHRS+S  W ++SKS  AS
Sbjct: 8  LSVSTTPKS-GKGEAVTGASDSPKGQCLCSPTTHKGSFRCRLHRSSS-AWMKRSKSMPAS 67

Query: 69 ADASNTSDLSPKSVESA 86
             S+ + LSPKSVES+
Sbjct: 68 ---SSVAALSPKSVESS 79

[Close]

BLAST of IVF0009136 vs. ExPASy TrEMBL
Match: A0A5N6QHE2 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_003263 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.0e-09
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 13 STAKSAGDGDGVAGHSCSSKAQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSTAASADAS 72
          ST+  +G  + V G S S K QCLCSPTTH GSFRCR HRS+S  W ++SKS  A    S
Sbjct: 10 STSPKSGKEEPVGGASSSPKGQCLCSPTTHQGSFRCRFHRSSSSAWMKRSKSVPAK--TS 69

Query: 73 NTSDLSPKSVES 85
          + + +SPKS+ES
Sbjct: 70 SVASMSPKSIES 79

[Close]

BLAST of IVF0009136 vs. ExPASy TrEMBL
Match: A0A7J7GYA4 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_015991 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.1e-09
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 6  KMSISIPSTAKSAGDGDGVAGHSCSSKAQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKST 65
          K  I++ +T+  +G+GD       S K QCLCSPTTH GSFRCR HRS S PW ++S S 
Sbjct: 4  KDGITVITTSPKSGNGD-----VNSPKGQCLCSPTTHQGSFRCRFHRSTSNPWFKRSNSM 63

Query: 66 AASADASNTSDLSPKSVES 85
             +  +N S +SPKSVES
Sbjct: 64 PPKSATNNLSSVSPKSVES 77

[Close]

BLAST of IVF0009136 vs. NCBI nr
Match: KAA0046595.1 (hypothetical protein E6C27_scaffold114G001360 [Cucumis melo var. makuwa] >TYK00101.1 hypothetical protein E5676_scaffold596G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 164 bits (416), Expect = 5.30e-51
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MGSQPKMSISIPSTAKSAGDGDGVAGHSCSSKAQCLCSPTTHPGSFRCRLHRSNSLPWSR 60
          MGSQPKMSISIPSTAKSAGDGDGVAGHSCSSKAQCLCSPTTHPGSFRCRLHRSNSLPWSR
Sbjct: 1  MGSQPKMSISIPSTAKSAGDGDGVAGHSCSSKAQCLCSPTTHPGSFRCRLHRSNSLPWSR 60

Query: 61 QSKSTAASADASNTSDLSPKSVESA 85
          QSKSTAASADASNTSDLSPKSVESA
Sbjct: 61 QSKSTAASADASNTSDLSPKSVESA 85

[Close]

BLAST of IVF0009136 vs. NCBI nr
Match: KAE8653119.1 (hypothetical protein Csa_020123 [Cucumis sativus])

HSP 1 Score: 143 bits (360), Expect = 5.70e-42
Identity = 76/82 (92.68%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 6   KMSISIPSTAKSAGDGDGVAGHS--CSSKAQCLCSPTTHPGSFRCRLHRSNSLPWSRQSK 65
           KMSI IPSTAKSAG+GDGV GHS  CSSK QCLCSPTTHPGSFRCRLHRSNSLPWSRQSK
Sbjct: 41  KMSIRIPSTAKSAGEGDGVLGHSHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSK 100

Query: 66  STAASADASNTSDLSPKSVESA 85
           STAASADASNTSDLSPKSVESA
Sbjct: 101 STAASADASNTSDLSPKSVESA 122

[Close]

BLAST of IVF0009136 vs. NCBI nr
Match: KAG6589904.1 (hypothetical protein SDJN03_15327, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023574.1 hypothetical protein SDJN02_14600, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131 bits (329), Expect = 1.02e-37
Identity = 68/85 (80.00%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 1  MGSQPKMSISIPSTAKSAGDGDGVAGHSCSSKAQCLCSPTTHPGSFRCRLHRSNSLPWSR 60
          M +  K+ ISIPS+AKS GDGDGVA H+CSSK QCLCSPTTHPGSFRCRLHRSNSLPW+R
Sbjct: 1  MSAHGKIRISIPSSAKSVGDGDGVAAHTCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWTR 60

Query: 61 QSKSTAAS-ADASNTSDLSPKSVES 84
           SK+TA+S ADAS+TSDLSPKSVES
Sbjct: 61 HSKTTASSSADASHTSDLSPKSVES 85

[Close]

BLAST of IVF0009136 vs. NCBI nr
Match: KAB1200592.1 (hypothetical protein CJ030_MR0G006893 [Morella rubra])

HSP 1 Score: 74.3 bits (181), Expect = 2.96e-15
Identity = 46/76 (60.53%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 9  ISIPSTAKSAGDGDGVAGHSCSSKAQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSTAAS 68
          +S+ +T KS G G+ V G S S K QCLCSPTTH GSFRCRLHRS+S  W ++SKS  AS
Sbjct: 8  LSVSTTPKS-GKGEAVTGASDSPKGQCLCSPTTHKGSFRCRLHRSSSA-WMKRSKSMPAS 67

Query: 69 ADASNTSDLSPKSVES 84
             S+ + LSPKSVES
Sbjct: 68 ---SSVAALSPKSVES 78

[Close]

BLAST of IVF0009136 vs. NCBI nr
Match: KAE7998752.1 (hypothetical protein FH972_003263 [Carpinus fangiana])

HSP 1 Score: 71.6 bits (174), Expect = 3.52e-14
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 13 STAKSAGDGDGVAGHSCSSKAQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSTAASADAS 72
          ST+  +G  + V G S S K QCLCSPTTH GSFRCR HRS+S  W ++SKS  A    S
Sbjct: 10 STSPKSGKEEPVGGASSSPKGQCLCSPTTHQGSFRCRFHRSSSSAWMKRSKSVPAKT--S 69

Query: 73 NTSDLSPKSVES 84
          + + +SPKS+ES
Sbjct: 70 SVASMSPKSIES 79

[Close]

BLAST of IVF0009136 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 50.4 bits (119), Expect = 8.0e-07
Identity = 25/46 (54.35%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 12 PSTAKSAGDGDGVAGHSCSS--KAQCLCSPTTHPGSFRCRLHRSNS 56
          P   +  G G G  G S SS  +  CLC+PTTHPGSFRCR HR N+
Sbjct: 40 PRVRRGGGGGGGSVGMSKSSSVRQNCLCAPTTHPGSFRCRYHRRNA 85

[Close]

BLAST of IVF0009136 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-06
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 7  MSISIPSTAKSAGD--GDGVAGHSCSSKAQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKS 66
          M + I S   SA +    G++  +  +K  CLCSPTTHPGSFRCR+HRS SL  ++    
Sbjct: 14 MKVEIHSHFNSAVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTK---- 73

Query: 67 TAASADASNTSDLSPKSVES 85
             S +A++  D  PK  +S
Sbjct: 74 ---SIEAASLLDSPPKPADS 86

[Close]

BLAST of IVF0009136 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-06
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 7  MSISIPSTAKSAGD--GDGVAGHSCSSKAQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKS 66
          M + I S   SA +    G++  +  +K  CLCSPTTHPGSFRCR+HRS SL  ++    
Sbjct: 14 MKVEIHSHFNSAVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTK---- 73

Query: 67 TAASADASNTSDLSPKSVES 85
             S +A++  D  PK  +S
Sbjct: 74 ---SIEAASLLDSPPKPADS 86

[Close]

BLAST of IVF0009136 vs. TAIR 10
Match: AT1G24577.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 8.9e-06
Identity = 19/34 (55.88%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 23 GVAGHSCSSKAQCLCSPTTHPGSFRCRLHRSNSL 57
          G++  +  +K  C+CSPTTHPGSF+C+LHR+ SL
Sbjct: 20 GLSRQTSITKTICICSPTTHPGSFKCKLHRTPSL 53

[Close]

BLAST of IVF0009136 vs. TAIR 10
Match: AT5G25280.1 (serine-rich protein-related )

HSP 1 Score: 43.9 bits (102), Expect = 7.5e-05
Identity = 18/34 (52.94%), Postives = 26/34 (76.47%), Query Frame = 0


Query: 31  SKAQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKS 65
           S+ +C+CSPTTHPGSFRC LH++ + P  + + S
Sbjct: 122 SRRRCMCSPTTHPGSFRCSLHKNVANPHGQGTAS 155

The following BLAST results are available for this feature:

BLAST of IVF0009136 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0009136 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJV5	2.0e-37	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LWJ0	6.6e-33	91.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369490 PE=4 SV=1	[more]
A0A6A1UK22	7.8e-10	59.74	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G006893 PE=4 SV=1	[more]
A0A5N6QHE2	3.0e-09	54.17	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_003263 PE=4 SV=1	[more]
A0A7J7GYA4	5.1e-09	50.63	Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_015991 PE=4 SV=1	[more]

BLAST of IVF0009136 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046595.1	5.30e-51	100.00	hypothetical protein E6C27_scaffold114G001360 [Cucumis melo var. makuwa] >TYK001...	[more]
KAE8653119.1	5.70e-42	92.68	hypothetical protein Csa_020123 [Cucumis sativus]	[more]
KAG6589904.1	1.02e-37	80.00	hypothetical protein SDJN03_15327, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAB1200592.1	2.96e-15	60.53	hypothetical protein CJ030_MR0G006893 [Morella rubra]	[more]
KAE7998752.1	3.52e-14	54.17	hypothetical protein FH972_003263 [Carpinus fangiana]	[more]

BLAST of IVF0009136 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13227.1	8.0e-07	54.35	serine-rich protein-related	[more]
AT1G67910.1	1.4e-06	41.25	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67910.2	1.4e-06	41.25	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G24577.1	8.9e-06	55.88	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G25280.1	7.5e-05	52.94	serine-rich protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	PANTHER	PTHR33132:SF37	SERINE-RICH PROTEIN-LIKE PROTEIN	coord: 3..83
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 3..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0009136.2	IVF0009136.2	mRNA