IVF0009098 (gene) Melon (IVF77) v1

Overview


Name	IVF0009098
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ribonuclease 3-like protein 1
Location	chr07: 23462180 .. 23464934 (+)
RNA-Seq Expression	IVF0009098
Synteny	IVF0009098

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTGATATGATTGTAACACCTCAACTATAATTAATTACCCTTTTTTTTCTTGTAAATGAGAGTGTAATGAGTTCACTTCAATTTTGATTCATTTTATGGATGAAATTAAAGTGTAATGAGTCTTATTCACTTCTTACCCATCCCCCATGGAACCTTTAACACCATCGAATCACTTTTCAGATAAAGAAGAAGAAGAAGAAGAACAACAACAACAACCAACCAAGAATTTATTCCGATCATCGAAAGGCCTGAATCTGCACAACCTATCCCATTTCTTGGATTGTATATCAACACTTTCTTGCTCTGAATTTGATTGATGAGACACTACACAGAAATCGTCGGAGCAGAGCGAAAGAATCGAGGAATTCAGATGGAGAAGAACAATCCTTCTTGTCCTCCAAGATTAAATATCAATCTTAAAAATCTTCCTCCAATTAATAACCCGCGCAATGTTACTGGGACTCACTCCTCGATTCCGGTAAAACTCTGTTGATTTACTGCGGTTGTATTCGATTTTTCTTCGGGATTTGAAACCCTTTTTGACTTTCGATCTGACTTGTTTCAGGCTAAATTTGAGAAATCTAGGTATATTAGGCGCGTTCCTCAGTTTATACCGTTTGATCACCGGCCGGAAATAAGGTCGAATAATTACCCTGGCTTGCCGGCGATGAAACTAGCGTGTTCTGATTCCGCTCGAGCTATGAACACGAAGACGATTCCGGTGGCTCCGTCGGCGGATTACTTCGTTCAAAAGAAAGATAATTGCAAGGATTTAGCTTCGAGGTGTAGTTGTTGCAGACATGGCTCGACCAAAGAAGGTGCCGGTTTAAACCTAGTTCCTCAACTTCATTGATTGTTATTTCGAATTCGAGATAGATGATTCTTGTTGTGTGTTATCATTTTCGGTTATTGTTGTTTTCTTCGCGATTTTCTTCCAACAATTGATTGTTCAACTGAACTCACATGCATTTCATCAGGAACACTGTCTTTATCGCCTGTTTATTACCCCTATTCACTTCCCAATTCGTCATTAATATTTGTCCATTAATTTCAAAGTGCAGTTTAAAAAGGAAAGAAAGAAAATGTAAGGATTTGGTCTCTAAAAATTTTCCAAAACAAAACTCTGGATCAAAACCATTTTCTGGATCATGTTTGAACAGTTTGATTTCTTTCAATTTTTTCTCTCTTGTTTTTCTTTTGATTCTTCTCAGGATGACTTGTTTTCAGTAATGAATGAAGTTGTGTGCGAATGATAGCATGCATTAGATTTCATAAATCATTCGATCACAATCCCTAGTGGTTGAAAGTTTTGAGAGTTGTTTCTGAATTTATGATTGTTTCCTCTTATTAATTTTTAATTAGTCAGAGAAACACTCATCAAATTCTAAAACAAAAATGTTTTTGAAAACCATTTGTTTAGTTTTCAAAACTCTGACTTGTTTTATTTTAAATATTAATAGAAAGTGAATTACAAATATAGAAACTTATGGATGTTATGAGTATTTATAAACTTGTCGTTATCAAATGACTTATAATTTATTACTTTCTCTTGCTCCAAAGAACAAGTTATGATGCTCTGCTCTTGAGAGTTGGAATCTCAAAATATCACTTCGAGTATGTAAAGAGGAGACTAAATGATTTAAAATCGTTGTTGTTCTTTGGAGTTGAGCACAGAAGCTAGGAGTGCAAGGAGTGAGCCTCATTCTCCATTTACCAAATAAAATAAATCAGTTATTCAAACATGTTTATACCTTTTTTCCCCTTAATTAAAAGGATGGAATATAATTTTGCAACTTAAATATCCAAAAGTGCTTAAGCTTTTTCACTTTGATGGCTTACTTTATCTTCGTTTAAGTTGGATGAGGAAGACTGCTTGTTGCCTCTCTGATTCCCATGAGCGTTGCCATGGCGCTTCAGAAATTTTGATTTTGACTACTCAAAGTTTGCTCTAATGGTTTGGCTTCACCCTTTTTCATTTTAGGTACTCCAGAAAAGAGAGCGGCAAAGTCCCTTCTATTTGAGATATGCACTGCAAATCACTGGCAGCCTCCTCTATTTGAATGCTGTGAAGAAGAAGGTCCCAGCCATGCAAGAAAGTAAGCTCAATATAACTCTCATCAACATAAGTAATACACTTGCGAACTTACAGATTACTTGTTATGCCTTTTGGTCTTGTAGATTAACCGATAGTACTCAGAAGTTGCCCTCTTCTAACAACTACTTTTTGAAGATTTTATAGCGTTTACAAGCCTTACTTGAACAAAATTTGTTATTATAAGTCGTACAACTCTGTTTCTTCTTTTTATATTCAAAACGGGTACAATTAGATGGCACCATGGAATCAGCTGATGAAGGTTTCTTTTTAGCTATGTTTGGATTTGACATGTCAATATAGTATCTGTACTGTGCGAACATGAGCAAGAATATAGATCGGATCGAAAGGAAGAAAAAAACACATCCGAGCAAAGAATCAAATTAGTAACTAGCTTCATTTATGGAAAACAGAGTTATTTGATGGGATTTTAGGAATTGATGCAAACTTTTGATTTTGATTCAGGTATAGATTCAAGGTTAGTATTGAAATGAAGGGAGATTGTGAAGCAGTTGTGGAATGCTATGGAAACCTTCAAACAAGAAAGAAAATGGCAGCAGAGCATGCAGCCGAAGGAGCATTATGGTACTTAAAGAATTTGGGATATCGTTTTGAAAGATGATAATTAGGAATTGTAAAGAACTAGAAATGAGAAATGGAA

mRNA sequence

GTTTTGATATGATTGTAACACCTCAACTATAATTAATTACCCTTTTTTTTCTTGTAAATGAGAGTGTAATGAGTTCACTTCAATTTTGATTCATTTTATGGATGAAATTAAAGTGTAATGAGTCTTATTCACTTCTTACCCATCCCCCATGGAACCTTTAACACCATCGAATCACTTTTCAGATAAAGAAGAAGAAGAAGAAGAACAACAACAACAACCAACCAAGAATTTATTCCGATCATCGAAAGGCCTGAATCTGCACAACCTATCCCATTTCTTGGATTGTATATCAACACTTTCTTGCTCTGAATTTGATTGATGAGACACTACACAGAAATCGTCGGAGCAGAGCGAAAGAATCGAGGAATTCAGATGGAGAAGAACAATCCTTCTTGTCCTCCAAGATTAAATATCAATCTTAAAAATCTTCCTCCAATTAATAACCCGCGCAATGTTACTGGGACTCACTCCTCGATTCCGGCTAAATTTGAGAAATCTAGGTATATTAGGCGCGTTCCTCAGTTTATACCGTTTGATCACCGGCCGGAAATAAGGTCGAATAATTACCCTGGCTTGCCGGCGATGAAACTAGCGTGTTCTGATTCCGCTCGAGCTATGAACACGAAGACGATTCCGGTGGCTCCGTCGGCGGATTACTTCGTTCAAAAGAAAGATAATTGCAAGGATTTAGCTTCGAGGTGTAGTTGTTGCAGACATGGCTCGACCAAAGAAGGTACTCCAGAAAAGAGAGCGGCAAAGTCCCTTCTATTTGAGATATGCACTGCAAATCACTGGCAGCCTCCTCTATTTGAATGCTGTGAAGAAGAAGGTCCCAGCCATGCAAGAAAGTATAGATTCAAGGTTAGTATTGAAATGAAGGGAGATTGTGAAGCAGTTGTGGAATGCTATGGAAACCTTCAAACAAGAAAGAAAATGGCAGCAGAGCATGCAGCCGAAGGAGCATTATGGTACTTAAAGAATTTGGGATATCGTTTTGAAAGATGATAATTAGGAATTGTAAAGAACTAGAAATGAGAAATGGAA

Coding sequence (CDS)

ATGAGACACTACACAGAAATCGTCGGAGCAGAGCGAAAGAATCGAGGAATTCAGATGGAGAAGAACAATCCTTCTTGTCCTCCAAGATTAAATATCAATCTTAAAAATCTTCCTCCAATTAATAACCCGCGCAATGTTACTGGGACTCACTCCTCGATTCCGGCTAAATTTGAGAAATCTAGGTATATTAGGCGCGTTCCTCAGTTTATACCGTTTGATCACCGGCCGGAAATAAGGTCGAATAATTACCCTGGCTTGCCGGCGATGAAACTAGCGTGTTCTGATTCCGCTCGAGCTATGAACACGAAGACGATTCCGGTGGCTCCGTCGGCGGATTACTTCGTTCAAAAGAAAGATAATTGCAAGGATTTAGCTTCGAGGTGTAGTTGTTGCAGACATGGCTCGACCAAAGAAGGTACTCCAGAAAAGAGAGCGGCAAAGTCCCTTCTATTTGAGATATGCACTGCAAATCACTGGCAGCCTCCTCTATTTGAATGCTGTGAAGAAGAAGGTCCCAGCCATGCAAGAAAGTATAGATTCAAGGTTAGTATTGAAATGAAGGGAGATTGTGAAGCAGTTGTGGAATGCTATGGAAACCTTCAAACAAGAAAGAAAATGGCAGCAGAGCATGCAGCCGAAGGAGCATTATGGTACTTAAAGAATTTGGGATATCGTTTTGAAAGATGA

Protein sequence

MRHYTEIVGAERKNRGIQMEKNNPSCPPRLNINLKNLPPINNPRNVTGTHSSIPAKFEKSRYIRRVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKDNCKDLASRCSCCRHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARKYRFKVSIEMKGDCEAVVECYGNLQTRKKMAAEHAAEGALWYLKNLGYRFER

Homology

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BLAST of IVF0009098 vs. ExPASy Swiss-Prot
Match: A7LFZ6 (Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DCL4 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-21
Identity = 43/81 (53.09%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 144  RAAKSLLFEICTANHWQPPLFECCEEEGPSHARKYRFKVSIEMKGDCEAVVECYGNLQTR 203
            + A+S LFE+C AN+W+PP F+ C+EEGPSH RK+ +KV +E+KG    ++EC+ + + +
Sbjct: 1568 KTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQ 1627

Query: 204  KKMAAEHAAEGALWYLKNLGY 225
            KK A EHAA+GALW LK LG+
Sbjct: 1628 KKAAQEHAAQGALWCLKQLGH 1648

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BLAST of IVF0009098 vs. ExPASy Swiss-Prot
Match: P84634 (Dicer-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=DCL4 PE=1 SV=2)

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-21
Identity = 45/88 (51.14%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 137  KEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARKYRFKVSIEMKGDCEAVVEC 196
            K G P  + AKSLL E C AN W+PP FECCEEEGP H + + +KV +E++      +EC
Sbjct: 1613 KAGGPSSKTAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILEVEDAPNMTLEC 1672

Query: 197  YGNLQTRKKMAAEHAAEGALWYLKNLGY 225
            YG  +  KK AAEHAA+ A+W LK+ G+
Sbjct: 1673 YGEARATKKGAAEHAAQAAIWCLKHSGF 1700

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BLAST of IVF0009098 vs. ExPASy Swiss-Prot
Match: Q9M8N2 (Ribonuclease 3-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=RTL1 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.7e-19
Identity = 39/86 (45.35%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 138 EGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARKYRFKVSIEMKGDC-EAVVEC 197
           E    + +AKS+L E+C +  W+PP++ECC  +GP H R + +KV +E++    + V+EC
Sbjct: 107 ESKTRRGSAKSVLHEMCASKRWRPPVYECCNVDGPCHLRLFTYKVMVEIRDSSGKTVLEC 166

Query: 198 YGNLQTRKKMAAEHAAEGALWYLKNL 223
           +G+ + +KK AAEHAAEGALWYL+++
Sbjct: 167 FGDPRRKKKAAAEHAAEGALWYLEHV 192

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BLAST of IVF0009098 vs. ExPASy Swiss-Prot
Match: Q9FKF0 (Ribonuclease 3-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=RTL3 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 4.4e-04
Identity = 23/63 (36.51%), Postives = 34/63 (53.97%), Query Frame = 0


Query: 150 LFEICTANHWQPPLFECCEEEGPSHARKYRFKVSIEMKGDCEAVVECYGNLQTRKKMAAE 209
           L EICT N W  P+F   EE+GP +  K+   V IE+  + E      G+++++KK A  
Sbjct: 312 LIEICTKNKWPRPIFSVQEEKGPKNEPKFVCSVKIEIP-NIEGTFHMKGDIKSKKKQAEN 371

Query: 210 HAA 213
             A
Sbjct: 372 SLA 373

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BLAST of IVF0009098 vs. ExPASy TrEMBL
Match: A0A5D3E0Z9 (Ribonuclease 3-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001930 PE=4 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 6.7e-133
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 1   MRHYTEIVGAERKNRGIQMEKNNPSCPPRLNINLKNLPPINNPRNVTGTHSSIPAKFEKS 60
           MRHYTEIVGAERKNRGIQMEKNNPSCPPRLNINLKNLPPINNPRNVTGTHSSIPAKFEKS
Sbjct: 1   MRHYTEIVGAERKNRGIQMEKNNPSCPPRLNINLKNLPPINNPRNVTGTHSSIPAKFEKS 60

Query: 61  RYIRRVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKDN 120
           RYIRRVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKDN
Sbjct: 61  RYIRRVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKDN 120

Query: 121 CKDLASRCSCCRHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARKYRF 180
           CKDLASRCSCCRHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARKYRF
Sbjct: 121 CKDLASRCSCCRHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARKYRF 180

Query: 181 KVSIEMKGDCEAVVECYGNLQTRKKMAAEHAAEGALWYLKNLGYRFER 229
           KVSIEMKGDCEAVVECYGNLQTRKKMAAEHAAEGALWYLKNLGYRFER
Sbjct: 181 KVSIEMKGDCEAVVECYGNLQTRKKMAAEHAAEGALWYLKNLGYRFER 228

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BLAST of IVF0009098 vs. ExPASy TrEMBL
Match: A0A1S3BXK0 (uncharacterized protein LOC103494682 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494682 PE=4 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 6.7e-133
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 1   MRHYTEIVGAERKNRGIQMEKNNPSCPPRLNINLKNLPPINNPRNVTGTHSSIPAKFEKS 60
           MRHYTEIVGAERKNRGIQMEKNNPSCPPRLNINLKNLPPINNPRNVTGTHSSIPAKFEKS
Sbjct: 1   MRHYTEIVGAERKNRGIQMEKNNPSCPPRLNINLKNLPPINNPRNVTGTHSSIPAKFEKS 60

Query: 61  RYIRRVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKDN 120
           RYIRRVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKDN
Sbjct: 61  RYIRRVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKDN 120

Query: 121 CKDLASRCSCCRHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARKYRF 180
           CKDLASRCSCCRHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARKYRF
Sbjct: 121 CKDLASRCSCCRHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARKYRF 180

Query: 181 KVSIEMKGDCEAVVECYGNLQTRKKMAAEHAAEGALWYLKNLGYRFER 229
           KVSIEMKGDCEAVVECYGNLQTRKKMAAEHAAEGALWYLKNLGYRFER
Sbjct: 181 KVSIEMKGDCEAVVECYGNLQTRKKMAAEHAAEGALWYLKNLGYRFER 228

[Close]

BLAST of IVF0009098 vs. ExPASy TrEMBL
Match: A0A0A0KYI7 (DRBM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G006230 PE=4 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 1.8e-114
Identity = 204/229 (89.08%), Postives = 216/229 (94.32%), Query Frame = 0


Query: 1   MRHYTEIVGAERKNRGIQMEKNNPSC-PPRLNINLKNLPPINNPRNVTGTHSSIPAKFEK 60
           MRHY++IVG ERKNRGIQME NNPSC PPRLNINLKNLPPINNPRNV+G+HSSIPAKFEK
Sbjct: 1   MRHYSDIVGPERKNRGIQME-NNPSCPPPRLNINLKNLPPINNPRNVSGSHSSIPAKFEK 60

Query: 61  SRYIRRVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKD 120
           SRYIRRVPQF+P DHRPEIRSN+Y GLP MKLA SDSARA+NTKT PVAPSAD FV+KKD
Sbjct: 61  SRYIRRVPQFMPSDHRPEIRSNDYAGLP-MKLAYSDSARALNTKTFPVAPSADSFVRKKD 120

Query: 121 NCKDLASRCSCCRHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARKYR 180
            CKDLASRCSCCRH STKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHA+KYR
Sbjct: 121 TCKDLASRCSCCRHDSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYR 180

Query: 181 FKVSIEMKGDCEAVVECYGNLQTRKKMAAEHAAEGALWYLKNLGYRFER 229
           FKV IEMKGDCEAVVECYGNLQTRKK+AAEHAAEGALWYL +LGYRF+R
Sbjct: 181 FKVRIEMKGDCEAVVECYGNLQTRKKVAAEHAAEGALWYLNHLGYRFKR 227

[Close]

BLAST of IVF0009098 vs. ExPASy TrEMBL
Match: A0A1S4DZP1 (uncharacterized protein LOC103494682 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494682 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 6.8e-101
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MRHYTEIVGAERKNRGIQMEKNNPSCPPRLNINLKNLPPINNPRNVTGTHSSIPAKFEKS 60
           MRHYTEIVGAERKNRGIQMEKNNPSCPPRLNINLKNLPPINNPRNVTGTHSSIPAKFEKS
Sbjct: 1   MRHYTEIVGAERKNRGIQMEKNNPSCPPRLNINLKNLPPINNPRNVTGTHSSIPAKFEKS 60

Query: 61  RYIRRVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKDN 120
           RYIRRVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKDN
Sbjct: 61  RYIRRVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKDN 120

Query: 121 CKDLASRCSCCRHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARK 178
           CKDLASRCSCCRHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARK
Sbjct: 121 CKDLASRCSCCRHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARK 177

[Close]

BLAST of IVF0009098 vs. ExPASy TrEMBL
Match: A0A6J1GW48 (ribonuclease 3-like protein 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458030 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 9.9e-76
Identity = 146/222 (65.77%), Postives = 169/222 (76.13%), Query Frame = 0


Query: 3   HYTEIVGAERKNRGIQMEKNNPSCPPRLNINLKNLPPINNPRNVTGTHSSIPAKFEKSRY 62
           HY EIVG ERKNR  QME N PSCP  +N+NLKNLPPI+NP      HSSIPAKFEKSRY
Sbjct: 6   HYREIVGEERKNRENQME-NTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRY 65

Query: 63  IRRVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKDNCK 122
           I RVPQF+P +H P++R N Y G+P M  AC DSAR+ N +T P         ++K+N  
Sbjct: 66  IGRVPQFMPPNHSPDVRPNEYDGVP-MNPACFDSARSPNARTTP--------KERKENFG 125

Query: 123 DLASRCSCCRHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARKYRFKV 182
           D ASR S C H STKEGT  K++AKSLL+EICTANHW+PPLFECCEEEGPSHA+KY FKV
Sbjct: 126 DSASRSSGCSHDSTKEGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKKYTFKV 185

Query: 183 SIEMKGDCEAVVECYGNLQTRKKMAAEHAAEGALWYLKNLGY 225
            +EMKGDC   +ECYG  QTRKK+AAE AAEGA+WYLK+LGY
Sbjct: 186 IVEMKGDCGEDLECYGKPQTRKKVAAEDAAEGAVWYLKHLGY 217

[Close]

BLAST of IVF0009098 vs. NCBI nr
Match: XP_008454206.1 (PREDICTED: uncharacterized protein LOC103494682 isoform X1 [Cucumis melo] >KAA0044459.1 ribonuclease 3-like protein 1 [Cucumis melo var. makuwa] >TYK29586.1 ribonuclease 3-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 479 bits (1234), Expect = 4.30e-171
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 1   MRHYTEIVGAERKNRGIQMEKNNPSCPPRLNINLKNLPPINNPRNVTGTHSSIPAKFEKS 60
           MRHYTEIVGAERKNRGIQMEKNNPSCPPRLNINLKNLPPINNPRNVTGTHSSIPAKFEKS
Sbjct: 1   MRHYTEIVGAERKNRGIQMEKNNPSCPPRLNINLKNLPPINNPRNVTGTHSSIPAKFEKS 60

Query: 61  RYIRRVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKDN 120
           RYIRRVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKDN
Sbjct: 61  RYIRRVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKDN 120

Query: 121 CKDLASRCSCCRHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARKYRF 180
           CKDLASRCSCCRHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARKYRF
Sbjct: 121 CKDLASRCSCCRHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARKYRF 180

Query: 181 KVSIEMKGDCEAVVECYGNLQTRKKMAAEHAAEGALWYLKNLGYRFER 228
           KVSIEMKGDCEAVVECYGNLQTRKKMAAEHAAEGALWYLKNLGYRFER
Sbjct: 181 KVSIEMKGDCEAVVECYGNLQTRKKMAAEHAAEGALWYLKNLGYRFER 228

[Close]

BLAST of IVF0009098 vs. NCBI nr
Match: XP_004152191.1 (uncharacterized protein LOC101212514 [Cucumis sativus] >KGN52916.1 hypothetical protein Csa_014441 [Cucumis sativus])

HSP 1 Score: 418 bits (1075), Expect = 7.26e-147
Identity = 204/229 (89.08%), Postives = 216/229 (94.32%), Query Frame = 0


Query: 1   MRHYTEIVGAERKNRGIQMEKNNPSCPP-RLNINLKNLPPINNPRNVTGTHSSIPAKFEK 60
           MRHY++IVG ERKNRGIQME NNPSCPP RLNINLKNLPPINNPRNV+G+HSSIPAKFEK
Sbjct: 1   MRHYSDIVGPERKNRGIQME-NNPSCPPPRLNINLKNLPPINNPRNVSGSHSSIPAKFEK 60

Query: 61  SRYIRRVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKD 120
           SRYIRRVPQF+P DHRPEIRSN+Y GLP MKLA SDSARA+NTKT PVAPSAD FV+KKD
Sbjct: 61  SRYIRRVPQFMPSDHRPEIRSNDYAGLP-MKLAYSDSARALNTKTFPVAPSADSFVRKKD 120

Query: 121 NCKDLASRCSCCRHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARKYR 180
            CKDLASRCSCCRH STKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHA+KYR
Sbjct: 121 TCKDLASRCSCCRHDSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYR 180

Query: 181 FKVSIEMKGDCEAVVECYGNLQTRKKMAAEHAAEGALWYLKNLGYRFER 228
           FKV IEMKGDCEAVVECYGNLQTRKK+AAEHAAEGALWYL +LGYRF+R
Sbjct: 181 FKVRIEMKGDCEAVVECYGNLQTRKKVAAEHAAEGALWYLNHLGYRFKR 227

[Close]

BLAST of IVF0009098 vs. NCBI nr
Match: XP_016901448.1 (PREDICTED: uncharacterized protein LOC103494682 isoform X2 [Cucumis melo])

HSP 1 Score: 374 bits (959), Expect = 1.15e-129
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MRHYTEIVGAERKNRGIQMEKNNPSCPPRLNINLKNLPPINNPRNVTGTHSSIPAKFEKS 60
           MRHYTEIVGAERKNRGIQMEKNNPSCPPRLNINLKNLPPINNPRNVTGTHSSIPAKFEKS
Sbjct: 1   MRHYTEIVGAERKNRGIQMEKNNPSCPPRLNINLKNLPPINNPRNVTGTHSSIPAKFEKS 60

Query: 61  RYIRRVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKDN 120
           RYIRRVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKDN
Sbjct: 61  RYIRRVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKDN 120

Query: 121 CKDLASRCSCCRHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARK 177
           CKDLASRCSCCRHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARK
Sbjct: 121 CKDLASRCSCCRHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARK 177

[Close]

BLAST of IVF0009098 vs. NCBI nr
Match: XP_038878769.1 (ribonuclease 3-like protein 1 isoform X1 [Benincasa hispida] >XP_038878776.1 ribonuclease 3-like protein 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 347 bits (890), Expect = 8.72e-119
Identity = 178/224 (79.46%), Postives = 191/224 (85.27%), Query Frame = 0


Query: 5   TEIVGAERKNRGIQMEKNNPSCPPRLNINLKNLPPINNPRNVTGTHSSIPAKFEKSRYIR 64
           TEIV AERKNRG QME N  SCP RLN NLKNLPPINN    TG HSSI AKFEKSRYIR
Sbjct: 4   TEIVEAERKNRGNQME-NTHSCPRRLNFNLKNLPPINNSLIGTGNHSSISAKFEKSRYIR 63

Query: 65  RVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKDNCKDL 124
           RVPQFIP +HRP    N Y GLP MK ACS SARA+N+KTIP APS D FVQKKDN +++
Sbjct: 64  RVPQFIPQNHRP----NEYAGLP-MKPACSGSARALNSKTIPEAPS-DSFVQKKDNSQEI 123

Query: 125 ASRCSCCRHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARKYRFKVSI 184
           ASR SCC HGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHA+KYRFKV++
Sbjct: 124 ASRSSCCGHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFKVTV 183

Query: 185 EMKGDCEAVVECYGNLQTRKKMAAEHAAEGALWYLKNLGYRFER 228
           EMKG  E V+ECYGNLQTRKK+AAEHAAEGA+WYLKNLGY F+R
Sbjct: 184 EMKGASETVLECYGNLQTRKKVAAEHAAEGAIWYLKNLGYCFKR 220

[Close]

BLAST of IVF0009098 vs. NCBI nr
Match: XP_038878786.1 (ribonuclease 3-like protein 1 isoform X2 [Benincasa hispida])

HSP 1 Score: 328 bits (842), Expect = 1.49e-111
Identity = 169/213 (79.34%), Postives = 181/213 (84.98%), Query Frame = 0


Query: 5   TEIVGAERKNRGIQMEKNNPSCPPRLNINLKNLPPINNPRNVTGTHSSIPAKFEKSRYIR 64
           TEIV AERKNRG QME N  SCP RLN NLKNLPPINN    TG HSSI AKFEKSRYIR
Sbjct: 4   TEIVEAERKNRGNQME-NTHSCPRRLNFNLKNLPPINNSLIGTGNHSSISAKFEKSRYIR 63

Query: 65  RVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKDNCKDL 124
           RVPQFIP +HRP    N Y GLP MK ACS SARA+N+KTIP APS D FVQKKDN +++
Sbjct: 64  RVPQFIPQNHRP----NEYAGLP-MKPACSGSARALNSKTIPEAPS-DSFVQKKDNSQEI 123

Query: 125 ASRCSCCRHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARKYRFKVSI 184
           ASR SCC HGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHA+KYRFKV++
Sbjct: 124 ASRSSCCGHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFKVTV 183

Query: 185 EMKGDCEAVVECYGNLQTRKKMAAEHAAEGALW 217
           EMKG  E V+ECYGNLQTRKK+AAEHAAEGA+W
Sbjct: 184 EMKGASETVLECYGNLQTRKKVAAEHAAEGAIW 209

[Close]

BLAST of IVF0009098 vs. TAIR 10
Match: AT5G20320.1 (dicer-like 4 )

HSP 1 Score: 104.8 bits (260), Expect = 9.6e-23
Identity = 45/88 (51.14%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 137  KEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARKYRFKVSIEMKGDCEAVVEC 196
            K G P  + AKSLL E C AN W+PP FECCEEEGP H + + +KV +E++      +EC
Sbjct: 1613 KAGGPSSKTAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILEVEDAPNMTLEC 1672

Query: 197  YGNLQTRKKMAAEHAAEGALWYLKNLGY 225
            YG  +  KK AAEHAA+ A+W LK+ G+
Sbjct: 1673 YGEARATKKGAAEHAAQAAIWCLKHSGF 1700

[Close]

BLAST of IVF0009098 vs. TAIR 10
Match: AT5G20320.2 (dicer-like 4 )

HSP 1 Score: 104.8 bits (260), Expect = 9.6e-23
Identity = 45/88 (51.14%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 137  KEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARKYRFKVSIEMKGDCEAVVEC 196
            K G P  + AKSLL E C AN W+PP FECCEEEGP H + + +KV +E++      +EC
Sbjct: 1599 KAGGPSSKTAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILEVEDAPNMTLEC 1658

Query: 197  YGNLQTRKKMAAEHAAEGALWYLKNLGY 225
            YG  +  KK AAEHAA+ A+W LK+ G+
Sbjct: 1659 YGEARATKKGAAEHAAQAAIWCLKHSGF 1686

[Close]

BLAST of IVF0009098 vs. TAIR 10
Match: AT1G80650.1 (RNAse THREE-like protein 1 )

HSP 1 Score: 96.7 bits (239), Expect = 2.6e-20
Identity = 39/86 (45.35%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 138 EGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARKYRFKVSIEMKGDC-EAVVEC 197
           E    + +AKS+L E+C +  W+PP++ECC  +GP H R + +KV +E++    + V+EC
Sbjct: 107 ESKTRRGSAKSVLHEMCASKRWRPPVYECCNVDGPCHLRLFTYKVMVEIRDSSGKTVLEC 166

Query: 198 YGNLQTRKKMAAEHAAEGALWYLKNL 223
           +G+ + +KK AAEHAAEGALWYL+++
Sbjct: 167 FGDPRRKKKAAAEHAAEGALWYLEHV 192

[Close]

BLAST of IVF0009098 vs. TAIR 10
Match: AT4G00420.2 (Double-stranded RNA-binding domain (DsRBD)-containing protein )

HSP 1 Score: 95.5 bits (236), Expect = 5.8e-20
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 0


Query: 136 TKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARKYRFKVSIEMKGDCE-AVV 195
           T E   ++ +AKS L+ +C+  HW+ PL+E    EGP H + +  KV++EMK D    V+
Sbjct: 75  TTEEETQRSSAKSQLYNLCSVRHWKAPLYEYI-AEGPCHMKIFTGKVTVEMKEDSRITVL 134

Query: 196 ECYGNLQTRKKMAAEHAAEGALWYLKNLGYRFE 228
           EC+GN Q +KK+AAE AAE ALWYLKN+GY  +
Sbjct: 135 ECFGNPQYKKKIAAEQAAEAALWYLKNVGYTLQ 166

[Close]

BLAST of IVF0009098 vs. TAIR 10
Match: AT4G00420.3 (Double-stranded RNA-binding domain (DsRBD)-containing protein )

HSP 1 Score: 95.5 bits (236), Expect = 5.8e-20
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 0


Query: 136 TKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARKYRFKVSIEMKGDCE-AVV 195
           T E   ++ +AKS L+ +C+  HW+ PL+E    EGP H + +  KV++EMK D    V+
Sbjct: 53  TTEEETQRSSAKSQLYNLCSVRHWKAPLYEYI-AEGPCHMKIFTGKVTVEMKEDSRITVL 112

Query: 196 ECYGNLQTRKKMAAEHAAEGALWYLKNLGYRFE 228
           EC+GN Q +KK+AAE AAE ALWYLKN+GY  +
Sbjct: 113 ECFGNPQYKKKIAAEQAAEAALWYLKNVGYTLQ 144

The following BLAST results are available for this feature:

BLAST of IVF0009098 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A7LFZ6	1.0e-21	53.09	Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DCL...	[more]
P84634	1.4e-21	51.14	Dicer-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=DCL4 PE=1 SV=2	[more]
Q9M8N2	3.7e-19	45.35	Ribonuclease 3-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=RTL1 PE=2 SV=1	[more]
Q9FKF0	4.4e-04	36.51	Ribonuclease 3-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=RTL3 PE=2 SV=1	[more]

BLAST of IVF0009098 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E0Z9	6.7e-133	100.00	Ribonuclease 3-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3BXK0	6.7e-133	100.00	uncharacterized protein LOC103494682 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KYI7	1.8e-114	89.08	DRBM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G006230 PE=4 S...	[more]
A0A1S4DZP1	6.8e-101	100.00	uncharacterized protein LOC103494682 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1GW48	9.9e-76	65.77	ribonuclease 3-like protein 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of IVF0009098 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454206.1	4.30e-171	100.00	PREDICTED: uncharacterized protein LOC103494682 isoform X1 [Cucumis melo] >KAA00...	[more]
XP_004152191.1	7.26e-147	89.08	uncharacterized protein LOC101212514 [Cucumis sativus] >KGN52916.1 hypothetical ...	[more]
XP_016901448.1	1.15e-129	100.00	PREDICTED: uncharacterized protein LOC103494682 isoform X2 [Cucumis melo]	[more]
XP_038878769.1	8.72e-119	79.46	ribonuclease 3-like protein 1 isoform X1 [Benincasa hispida] >XP_038878776.1 rib...	[more]
XP_038878786.1	1.49e-111	79.34	ribonuclease 3-like protein 1 isoform X2 [Benincasa hispida]	[more]

BLAST of IVF0009098 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20320.1	9.6e-23	51.14	dicer-like 4	[more]
AT5G20320.2	9.6e-23	51.14	dicer-like 4	[more]
AT1G80650.1	2.6e-20	45.35	RNAse THREE-like protein 1	[more]
AT4G00420.2	5.8e-20	48.39	Double-stranded RNA-binding domain (DsRBD)-containing protein	[more]
AT4G00420.3	5.8e-20	48.39	Double-stranded RNA-binding domain (DsRBD)-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014720	Double-stranded RNA-binding domain	SMART	SM00358	DRBM_3	coord: 146..220 e-value: 1.3E-8 score: 44.6
IPR014720	Double-stranded RNA-binding domain	PROSITE	PS50137	DS_RBD	coord: 145..221 score: 9.294987
None	No IPR available	GENE3D	3.30.160.20		coord: 152..221 e-value: 1.1E-21 score: 79.1
None	No IPR available	PFAM	PF14709	DND1_DSRM	coord: 146..220 e-value: 2.6E-14 score: 53.3
None	No IPR available	PANTHER	PTHR14950:SF67	DOUBLE-STRANDED RNA-BINDING DOMAIN (DSRBD)-CONTAINING PROTEIN	coord: 11..228
None	No IPR available	PANTHER	PTHR14950	DICER-RELATED	coord: 11..228
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 146..224

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0009098.1	IVF0009098.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030422	production of siRNA involved in RNA interference
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0004525	ribonuclease III activity
molecular_function	GO:0003723	RNA binding