IVF0009073 (gene) Melon (IVF77) v1

Overview
NameIVF0009073
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr06: 4119414 .. 4119581 (-)
RNA-Seq ExpressionIVF0009073
SyntenyIVF0009073
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATATTACGACGACGTTGATGACGTGGATGAGGGGGACTCCGCATACGCGATGACCACCGCTACAGAAGACATTCACTACATTGAGACGACAAACGAGTGGTCTCAGTGGTGCGACGAACTAGCTGAATCGATGTTCATAGATTGGCAGTTGCGTAACACTTAG

mRNA sequence

ATGATATATTACGACGACGTTGATGACGTGGATGAGGGGGACTCCGCATACGCGATGACCACCGCTACAGAAGACATTCACTACATTGAGACGACAAACGAGTGGTCTCAGTGGTGCGACGAACTAGCTGAATCGATGTTCATAGATTGGCAGTTGCGTAACACTTAG

Coding sequence (CDS)

ATGATATATTACGACGACGTTGATGACGTGGATGAGGGGGACTCCGCATACGCGATGACCACCGCTACAGAAGACATTCACTACATTGAGACGACAAACGAGTGGTCTCAGTGGTGCGACGAACTAGCTGAATCGATGTTCATAGATTGGCAGTTGCGTAACACTTAG

Protein sequence

MIYYDDVDDVDEGDSAYAMTTATEDIHYIETTNEWSQWCDELAESMFIDWQLRNT
Homology
BLAST of IVF0009073 vs. ExPASy TrEMBL
Match: A0A1S4E0Z9 (uncharacterized protein LOC107991461 OS=Cucumis melo OX=3656 GN=LOC107991461 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.8e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MIYYDDVDDVDEGDSAYAMTTATEDIHYIETTNEWSQWCDELAESMFIDWQLRNT 56
           MIYYDDVDDVDEGDSAYAMTTATEDIHYIETTNEWSQWCDELAESMFIDWQLRNT
Sbjct: 103 MIYYDDVDDVDEGDSAYAMTTATEDIHYIETTNEWSQWCDELAESMFIDWQLRNT 157

BLAST of IVF0009073 vs. ExPASy TrEMBL
Match: A0A5D3BDZ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00280 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.0e-18
Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = 0

Query: 1  MIYYDDVDDVDEGDSAYAMTTATEDIHYIETTNEWSQWCDELAESMFIDWQLRN 55
          M Y DD+DDVDEGDSAYA TTA+EDIHYIETTNEWSQW DELAESMF DWQLRN
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRN 54

BLAST of IVF0009073 vs. ExPASy TrEMBL
Match: A0A5D3DAU7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00390 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 0

Query: 1   MIYYDDVDDVDEGDSAYAMTTATEDIHYIETTNEWSQWCDELAESMFIDWQLRN 55
           M YYDDVDD DEGDS YAMTTA+EDI YIETTNEWSQW D+LAESMF +WQLRN
Sbjct: 241 MTYYDDVDDEDEGDSTYAMTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRN 294

BLAST of IVF0009073 vs. ExPASy TrEMBL
Match: A0A5A7VK86 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001570 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.3e-17
Identity = 44/54 (81.48%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1   MIYYDDVDDVDEGDSAYAMTTATEDIHYIETTNEWSQWCDELAESMFIDWQLRN 55
           M Y +DVDDVDEGDS YA TTA+EDIHYIETTNEWSQW DEL ESMF DWQL N
Sbjct: 246 MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHN 299

BLAST of IVF0009073 vs. ExPASy TrEMBL
Match: A0A5D3CUG9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00180 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.3e-17
Identity = 45/54 (83.33%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1   MIYYDDVDDVDEGDSAYAMTTATEDIHYIETTNEWSQWCDELAESMFIDWQLRN 55
           M Y  DVDDVDEGDS YA T A+EDIHYIETTNEWSQW DELAESMF DWQLRN
Sbjct: 261 MTYCKDVDDVDEGDSTYATTIASEDIHYIETTNEWSQWRDELAESMFTDWQLRN 314

BLAST of IVF0009073 vs. NCBI nr
Match: XP_016901894.1 (PREDICTED: uncharacterized protein LOC107991461 [Cucumis melo])

HSP 1 Score: 118 bits (296), Expect = 2.49e-32
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MIYYDDVDDVDEGDSAYAMTTATEDIHYIETTNEWSQWCDELAESMFIDWQLRNT 55
           MIYYDDVDDVDEGDSAYAMTTATEDIHYIETTNEWSQWCDELAESMFIDWQLRNT
Sbjct: 103 MIYYDDVDDVDEGDSAYAMTTATEDIHYIETTNEWSQWCDELAESMFIDWQLRNT 157

BLAST of IVF0009073 vs. NCBI nr
Match: KAA0054051.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (249), Expect = 2.02e-26
Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = 0

Query: 1  MIYYDDVDDVDEGDSAYAMTTATEDIHYIETTNEWSQWCDELAESMFIDWQLRN 54
          M Y DD+DDVDEGDSAYA TTA+EDIHYIETTNEWSQW DELAESMF DWQLRN
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRN 54

BLAST of IVF0009073 vs. NCBI nr
Match: KAA0060171.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 3.00e-23
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 0

Query: 8   DDVDEGDSAYAMTTATEDIHYIETTNEWSQWCDELAESMFIDWQLRN 54
           DDVDEGDS YA TTA+EDIHYIETTNEWSQWCD+LA+SMFIDWQLRN
Sbjct: 57  DDVDEGDSTYATTTASEDIHYIETTNEWSQWCDKLAKSMFIDWQLRN 103

BLAST of IVF0009073 vs. NCBI nr
Match: KAA0035723.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK30822.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 4.37e-23
Identity = 44/54 (81.48%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1   MIYYDDVDDVDEGDSAYAMTTATEDIHYIETTNEWSQWCDELAESMFIDWQLRN 54
           M Y DDVD+VDEGDS YAMTT TEDI+YIE TNEWSQW DELAESMF DWQL N
Sbjct: 51  MTYCDDVDEVDEGDSTYAMTTVTEDIYYIEMTNEWSQWRDELAESMFTDWQLHN 104

BLAST of IVF0009073 vs. NCBI nr
Match: TYK04228.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 6.56e-23
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 0

Query: 1  MIYYDDVDDVDEGDSAYAMTTATEDIHYIETTNEWSQWCDELAESMFIDWQLRNT 55
          M Y D+VDD DEGDS YA TTA+EDI YIETTNEWSQW D+LAESMF +WQLRNT
Sbjct: 1  MTYCDEVDDKDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNT 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S4E0Z92.8e-24100.00uncharacterized protein LOC107991461 OS=Cucumis melo OX=3656 GN=LOC107991461 PE=... [more]
A0A5D3BDZ01.0e-1887.04Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DAU71.1e-1783.33Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VK867.3e-1781.48Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CUG97.3e-1783.33Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
XP_016901894.12.49e-32100.00PREDICTED: uncharacterized protein LOC107991461 [Cucumis melo][more]
KAA0054051.12.02e-2687.04retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon p... [more]
KAA0060171.13.00e-2389.36retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0035723.14.37e-2381.48retrotransposon protein [Cucumis melo var. makuwa] >TYK30822.1 retrotransposon p... [more]
TYK04228.16.56e-2378.18retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0009073.1IVF0009073.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016788 hydrolase activity, acting on ester bonds
molecular_function GO:0046872 metal ion binding