IVF0009050 (gene) Melon (IVF77) v1

Overview


Name	IVF0009050
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	50S ribosomal protein L18-like
Location	tig00000267: 1204721 .. 1206726 (+)
RNA-Seq Expression	IVF0009050
Synteny	IVF0009050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAGATAGTAGCACAGAAAGCAAGAGGAGCAAGAGATCGGATTCATACCTGGAGGGAAGTTGAAGCGAAGAATCCTCGAGAGGAAAGTGAAAATGTTGTTAAGCACATCAATTCCCGAGTCATCCTCATCAGCCACATTACTTTCCAGTTTTCTTCAGAAACCCACTTCGAGTTCATGGTCATCTTCTTTTTCCAAGCTCTCCATCTCCTTCGACGCCATTAAAGCACCTTCTCTTTCAACTCACAATACAGTATGTTTTCTCTCTTCTACTCCACTTTCAGTTAGCCATGCATTTCTCTATCTTCCCTGCGAAAACGAACATAAAAGGGGGGAAAAATGGAAAACAATCTCAATTTCGAAGAACCGATGAAATTTTTTCGAAACTAATCGCGAATGCTGGGTTTGATTGTGGTGGTGCTCGTTTGGGAAATCTATGTAGTTACGTTGTTTTGGAGAGACTATGAACTTGAATACAAAGGGTTTCGAATACCTCGACTATTACGAGGAATGCGATTTTAATTTGGATTATGCAGCAGCCATGGTGTTCGACGAAATGTCTAGAGAAAAGGAAACCATTTTTTTTCCATCGTTTTGTGACGAGAATAGTTGAGGAATTTTTTGGGTTTAGCAAATGACTAAGCAGGTTCTAACCTGGGTAGACTTATGATTTGAGTTTTGTGGATTCTTTAGAATTATAACAGTAGATGTTTCAACAACATATCAATGTTGGATACCATATTCTGTAGGTCAAAGTCCCACTAAGAAGTTTAGATCAGACAGAGATGGCTATGACAAATAACACTTATTACAGAAAGGTATACGACCAAAGTCTCACATGGACTAATAGGAGAAGATCATGGGCTAAATTTGAATACACTTGTCTTCATCAATGCGTGTTGTTTCAAGGGAAAGTAAAACTAAAAGCAAAACTATGAAAATCTATACAAAAAATCGGATATATCATATTGTCGTGGAGATGTTAGAGAGGTCTATTGTCAATAACATCAAAGTATGTCTCGAGCTTAGTTGTAGAATTAGAATAATTGGTTACCTAAGAATGAAATAGTCAGCTTCAATGACATGGTCACATGGGGGATCTACAGGTAACCATTGATTGACCAATTACTCCAAGAAAATGTTGCTTCAAAGGGAGGATAGTTGGGAGTGCAACCAAAATTCCATATTGGCTAACGGAGTAGAATACTACAATATCTATGTGAGGACAATTGTTTTTGCTAATATATACGAAGTCTTTTCGGTGAAACCAAAAAAAATAACATCATAGCAACTGTGGAGATGTTGAAGAGGTAAGTTGTCTACACCTTTTCAAAGAAAATGAAAATGAAAATTCAGACACTTAAGCTTGAAACCTACAGATATAAGACTGTCGGAGGACGCAACCCCAAATATGACTGGTTCCTCATCATGCAAGTCTTGAACTCAGAACATACATGAAAGAAGAAAATAGTTCATGGAGCTTACGACTTACTTTCGTTTTGCAGAAGTCTTTGATTAAAGCAGCAGCCTGGACACGAAGATCACGAGGAGAAGCTGCAAAAAGCGGGAATAAGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCATTTGTTTTGGATGTTTACTTTTCAAGGAGGTTCATCCATGCCAAAGTGATGCATCGAGGAACAAGCAAGGTTGTTTCAGCAGCAAGCACTAATTGCAAGGATTTAAGGTATTCATTACCATCACCCTCTGATGACAATGCCTGTAGGATTATTGGGAACCTAATTGCTGAGAGATGTAAAGAAGCTGATGTGTTTGCCATGTCTTATGATCCTCCAAGCATGGAAAGAATTCAAGACAAAGTTGGAATTGTTATTGATACTATTAAGGAGAATGGTATTATATTTGTGTAGACTTTGCTATCCATCTTCTCCACACATAAATTAGTCTTCTTTCTACCGTGCTAATGATATATAGCAAAAAGAAATTTAAATGAATTATAAAGAATTTGGTAGG

mRNA sequence

ATTAGATAGTAGCACAGAAAGCAAGAGGAGCAAGAGATCGGATTCATACCTGGAGGGAAGTTGAAGCGAAGAATCCTCGAGAGGAAAGTGAAAATGTTGTTAAGCACATCAATTCCCGAGTCATCCTCATCAGCCACATTACTTTCCAGTTTTCTTCAGAAACCCACTTCGAGTTCATGGTCATCTTCTTTTTCCAAGCTCTCCATCTCCTTCGACGCCATTAAAGCACCTTCTCTTTCAACTCACAATACAAAGTCTTTGATTAAAGCAGCAGCCTGGACACGAAGATCACGAGGAGAAGCTGCAAAAAGCGGGAATAAGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCATTTGTTTTGGATGTTTACTTTTCAAGGAGGTTCATCCATGCCAAAGTGATGCATCGAGGAACAAGCAAGGTTGTTTCAGCAGCAAGCACTAATTGCAAGGATTTAAGGTATTCATTACCATCACCCTCTGATGACAATGCCTGTAGGATTATTGGGAACCTAATTGCTGAGAGATGTAAAGAAGCTGATGTGTTTGCCATGTCTTATGATCCTCCAAGCATGGAAAGAATTCAAGACAAAGTTGGAATTGTTATTGATACTATTAAGGAGAATGGTATTATATTTGTGTAGACTTTGCTATCCATCTTCTCCACACATAAATTAGTCTTCTTTCTACCGTGCTAATGATATATAGCAAAAAGAAATTTAAATGAATTATAAAGAATTTGGTAGG

Coding sequence (CDS)

ATGTTGTTAAGCACATCAATTCCCGAGTCATCCTCATCAGCCACATTACTTTCCAGTTTTCTTCAGAAACCCACTTCGAGTTCATGGTCATCTTCTTTTTCCAAGCTCTCCATCTCCTTCGACGCCATTAAAGCACCTTCTCTTTCAACTCACAATACAAAGTCTTTGATTAAAGCAGCAGCCTGGACACGAAGATCACGAGGAGAAGCTGCAAAAAGCGGGAATAAGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCATTTGTTTTGGATGTTTACTTTTCAAGGAGGTTCATCCATGCCAAAGTGATGCATCGAGGAACAAGCAAGGTTGTTTCAGCAGCAAGCACTAATTGCAAGGATTTAAGGTATTCATTACCATCACCCTCTGATGACAATGCCTGTAGGATTATTGGGAACCTAATTGCTGAGAGATGTAAAGAAGCTGATGTGTTTGCCATGTCTTATGATCCTCCAAGCATGGAAAGAATTCAAGACAAAGTTGGAATTGTTATTGATACTATTAAGGAGAATGGTATTATATTTGTGTAG

Protein sequence

MLLSTSIPESSSSATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKSLIKAAAWTRRSRGEAAKSGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKENGIIFV

Homology

[Close]

BLAST of IVF0009050 vs. ExPASy Swiss-Prot
Match: Q5P316 (50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=rplR PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.8e-06
Identity = 38/121 (31.40%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 64  RRSRGEAAKSGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKD 123
           RR+R   AK    KS +           L V+ +   I+A+V+    S+V++AAST   D
Sbjct: 9   RRARKTRAKIAELKSVR-----------LTVFRTNSHIYAQVIDGSGSRVLAAASTVEAD 68

Query: 124 LRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKENGII 183
           +R  LP+  +  A +++G LIAER K A V A+++D    +    +V  + +  +E G+ 
Sbjct: 69  VRSQLPNGGNKQAAQVVGKLIAERAKAAGVEAVAFDRAGFQ-YHGRVKALAEAAREGGLK 117

Query: 184 F 185
           F
Sbjct: 129 F 117

[Close]

BLAST of IVF0009050 vs. ExPASy Swiss-Prot
Match: B5ZYV1 (50S ribosomal protein L18 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) OX=395492 GN=rplR PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.2e-05
Identity = 31/93 (33.33%), Postives = 52/93 (55.91%), Query Frame = 0


Query: 92  LDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPSDDNACRIIGNLIAERCKEA 151
           L V+ S + I+A+V+     K ++AAST  KDLR SL + +D  A  ++G L+AER  +A
Sbjct: 29  LSVHRSSKNIYAQVIDDVAGKTLAAASTLDKDLRGSLKTGADTAAAALVGKLVAERASKA 88

Query: 152 DVFAMSYDPPSMERIQDKVGIVIDTIKENGIIF 185
            V  + +D  +      ++  + D  +E G+ F
Sbjct: 89  GVTDVVFDRGAF-IYHGRIKALADAAREGGLTF 120

[Close]

BLAST of IVF0009050 vs. ExPASy Swiss-Prot
Match: A9BG02 (50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) OX=403833 GN=rplR PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.5e-05
Identity = 34/121 (28.10%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 72  KSGNKKSWKQRTDMYMRPFV--------LDVYFSRRFIHAKVMHRGTSKVVSAASTNCKD 131
           K  +KK+ +Q+  + +R  V        L V+ S++ I+A+++       +++AST  K 
Sbjct: 3   KQLDKKALRQKRHLRVRKNVRGTSEKPRLTVFKSQKHIYAQIIDDTKGVTLASASTTQKQ 62

Query: 132 LRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKENGII 185
           L+  L    D+NA + +G LIAE+ KE  +  + +D  S  +   KV  + +  +E G+ 
Sbjct: 63  LKEKLEKTWDENAAKEVGKLIAEKAKEKGITEIVFD-RSGYKYHGKVKALAEAARETGLK 122

[Close]

BLAST of IVF0009050 vs. ExPASy Swiss-Prot
Match: B0U0X3 (50S ribosomal protein L18 OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017 / FSC 153 / O#319-036) OX=484022 GN=rplR PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 9.3e-05
Identity = 29/93 (31.18%), Postives = 53/93 (56.99%), Query Frame = 0


Query: 92  LDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPSDDNACRIIGNLIAERCKEA 151
           L VY + R ++A+V+    S V++AAST  KD++       + N+  I+G +IA RCKE 
Sbjct: 26  LCVYRTPRHVYAQVISGDGSTVLAAASTVEKDVKAKCKYTGNVNSAAIVGEVIANRCKEK 85

Query: 152 DVFAMSYDPPSMERIQDKVGIVIDTIKENGIIF 185
            +  +++D  S  +   +V  + +  +E+G+ F
Sbjct: 86  GISQVAFD-RSGYKYHGRVKALAEAAREHGLQF 117

[Close]

BLAST of IVF0009050 vs. ExPASy Swiss-Prot
Match: Q11HR8 (50S ribosomal protein L18 OS=Chelativorans sp. (strain BNC1) OX=266779 GN=rplR PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.2e-04
Identity = 31/93 (33.33%), Postives = 51/93 (54.84%), Query Frame = 0


Query: 92  LDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPSDDNACRIIGNLIAERCKEA 151
           L VY S + I+A+V+       ++AAS+  KDLR  L + +D +A  ++G LIAER K+A
Sbjct: 28  LSVYRSSKHIYAQVIDDVKGHTLAAASSLDKDLREKLKTGADVDAAGVVGKLIAERAKKA 87

Query: 152 DVFAMSYDPPSMERIQDKVGIVIDTIKENGIIF 185
            +  + +D         +V  + D  +E G+ F
Sbjct: 88  GIDKVVFD-RGPYIYHGRVKALADAAREGGLEF 119

[Close]

BLAST of IVF0009050 vs. ExPASy TrEMBL
Match: A0A5A7U4A4 (50S ribosomal protein L18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003310 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 1.9e-93
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MLLSTSIPESSSSATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKSLIKAA 60
           MLLSTSIPESSSSATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKSLIKAA
Sbjct: 1   MLLSTSIPESSSSATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKSLIKAA 60

Query: 61  AWTRRSRGEAAKSGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTN 120
           AWTRRSRGEAAKSGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTN
Sbjct: 61  AWTRRSRGEAAKSGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTN 120

Query: 121 CKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKEN 180
           CKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKEN
Sbjct: 121 CKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKEN 180

Query: 181 GIIFV 186
           GIIFV
Sbjct: 181 GIIFV 185

[Close]

BLAST of IVF0009050 vs. ExPASy TrEMBL
Match: A0A1S3AVM4 (50S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103483425 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 7.2e-93
Identity = 184/185 (99.46%), Postives = 184/185 (99.46%), Query Frame = 0


Query: 1   MLLSTSIPESSSSATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKSLIKAA 60
           MLLSTSIPESSSSATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKSLIKAA
Sbjct: 1   MLLSTSIPESSSSATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKSLIKAA 60

Query: 61  AWTRRSRGEAAKSGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTN 120
           AWTRRSRGEAAK GNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTN
Sbjct: 61  AWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTN 120

Query: 121 CKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKEN 180
           CKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKEN
Sbjct: 121 CKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKEN 180

Query: 181 GIIFV 186
           GIIFV
Sbjct: 181 GIIFV 185

[Close]

BLAST of IVF0009050 vs. ExPASy TrEMBL
Match: A0A0A0L7S5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127780 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 1.7e-89
Identity = 180/186 (96.77%), Postives = 182/186 (97.85%), Query Frame = 0


Query: 1   MLLSTSIPESSSS-ATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKSLIKA 60
           MLLSTSIPESSSS ATL+SSFL KPTSSSWSSSFSKLSISFDAIKAPSLSTHNTK LIKA
Sbjct: 1   MLLSTSIPESSSSAATLVSSFLHKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKFLIKA 60

Query: 61  AAWTRRSRGEAAKSGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST 120
           AAWTRRSRGEAAK GNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST
Sbjct: 61  AAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST 120

Query: 121 NCKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE 180
           NCKDLRYSLPSP+DDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE
Sbjct: 121 NCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE 180

Query: 181 NGIIFV 186
           NGIIFV
Sbjct: 181 NGIIFV 186

[Close]

BLAST of IVF0009050 vs. ExPASy TrEMBL
Match: A0A6J1CZ23 (uncharacterized protein LOC111016081 OS=Momordica charantia OX=3673 GN=LOC111016081 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.6e-68
Identity = 147/192 (76.56%), Postives = 161/192 (83.85%), Query Frame = 0


Query: 2   LLSTSIPE--SSS------SATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNT 61
           +LS +IPE  SSS      SA LL+ F+QKPTS SW SSF KL ISFDAI AP  STH+ 
Sbjct: 1   MLSLTIPEPLSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHDR 60

Query: 62  KSLIKAAAWTRRSRGEAAKSGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 121
            S I+ AAWTRRSRGEAAK  N+KSWKQRTDMYMRPFVLDV+FSRRFIHAKVMHR TSKV
Sbjct: 61  NSFIR-AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKV 120

Query: 122 VSAASTNCKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIV 181
           VSAASTN KDLRYSLPSP+DDNACRIIGN+IAERCKEADVF MSY+PP  ERI+ K+ IV
Sbjct: 121 VSAASTNSKDLRYSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIV 180

Query: 182 IDTIKENGIIFV 186
           IDTIKENGI+FV
Sbjct: 181 IDTIKENGILFV 191

[Close]

BLAST of IVF0009050 vs. ExPASy TrEMBL
Match: A0A6J1FBY3 (uncharacterized protein LOC111444022 OS=Cucurbita moschata OX=3662 GN=LOC111444022 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 4.7e-68
Identity = 148/192 (77.08%), Postives = 162/192 (84.38%), Query Frame = 0


Query: 3   LSTSIPESSS--------SATLLSSFLQKPTSS-SWSSSFSKLSISFDAIKAPSLSTHNT 62
           LS+SIP SSS        SATLLS F+QKPT+S SW SSFSKLSI   AIK PS STHN 
Sbjct: 4   LSSSIPGSSSWSASVHPPSATLLSGFIQKPTTSLSWPSSFSKLSI---AIKPPSPSTHNR 63

Query: 63  KSLIKAAAWTRRSRGEAAKSGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 122
            S+I+ AAWTRRSRGE +K  N+KSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV
Sbjct: 64  NSIIQ-AAWTRRSRGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 123

Query: 123 VSAASTNCKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIV 182
           VSAASTNCKDLRYSLPSP+DDNACRIIGNLIAERCKEADVF +SYDPP   +I+ K+ IV
Sbjct: 124 VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIV 183

Query: 183 IDTIKENGIIFV 186
           ID IK+NGI+FV
Sbjct: 184 IDAIKDNGILFV 191

[Close]

BLAST of IVF0009050 vs. NCBI nr
Match: KAA0049096.1 (50S ribosomal protein L18-like [Cucumis melo var. makuwa] >TYK17467.1 50S ribosomal protein L18-like [Cucumis melo var. makuwa])

HSP 1 Score: 352 bits (902), Expect = 6.72e-122
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MLLSTSIPESSSSATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKSLIKAA 60
           MLLSTSIPESSSSATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKSLIKAA
Sbjct: 1   MLLSTSIPESSSSATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKSLIKAA 60

Query: 61  AWTRRSRGEAAKSGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTN 120
           AWTRRSRGEAAKSGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTN
Sbjct: 61  AWTRRSRGEAAKSGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTN 120

Query: 121 CKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKEN 180
           CKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKEN
Sbjct: 121 CKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKEN 180

Query: 181 GIIFV 185
           GIIFV
Sbjct: 181 GIIFV 185

[Close]

BLAST of IVF0009050 vs. NCBI nr
Match: XP_008438261.1 (PREDICTED: 50S ribosomal protein L18-like [Cucumis melo])

HSP 1 Score: 350 bits (897), Expect = 3.89e-121
Identity = 184/185 (99.46%), Postives = 184/185 (99.46%), Query Frame = 0


Query: 1   MLLSTSIPESSSSATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKSLIKAA 60
           MLLSTSIPESSSSATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKSLIKAA
Sbjct: 1   MLLSTSIPESSSSATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKSLIKAA 60

Query: 61  AWTRRSRGEAAKSGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTN 120
           AWTRRSRGEAAK GNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTN
Sbjct: 61  AWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTN 120

Query: 121 CKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKEN 180
           CKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKEN
Sbjct: 121 CKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKEN 180

Query: 181 GIIFV 185
           GIIFV
Sbjct: 181 GIIFV 185

[Close]

BLAST of IVF0009050 vs. NCBI nr
Match: XP_011650830.1 (uncharacterized protein LOC101221429 [Cucumis sativus] >KGN56667.1 hypothetical protein Csa_010165 [Cucumis sativus])

HSP 1 Score: 338 bits (868), Expect = 1.06e-116
Identity = 180/186 (96.77%), Postives = 182/186 (97.85%), Query Frame = 0


Query: 1   MLLSTSIPESSSSA-TLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKSLIKA 60
           MLLSTSIPESSSSA TL+SSFL KPTSSSWSSSFSKLSISFDAIKAPSLSTHNTK LIKA
Sbjct: 1   MLLSTSIPESSSSAATLVSSFLHKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKFLIKA 60

Query: 61  AAWTRRSRGEAAKSGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST 120
           AAWTRRSRGEAAK GNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST
Sbjct: 61  AAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST 120

Query: 121 NCKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE 180
           NCKDLRYSLPSP+DDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE
Sbjct: 121 NCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE 180

Query: 181 NGIIFV 185
           NGIIFV
Sbjct: 181 NGIIFV 186

[Close]

BLAST of IVF0009050 vs. NCBI nr
Match: XP_038905466.1 (50S ribosomal protein L18-like [Benincasa hispida])

HSP 1 Score: 301 bits (770), Expect = 1.05e-101
Identity = 162/191 (84.82%), Postives = 173/191 (90.58%), Query Frame = 0


Query: 2   LLSTSIPESSSSA-------TLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTK 61
           +LSTSIPESSSSA       TLLS F+QKPTS SW SSFSKLSISF AIKAPSLSTH+ K
Sbjct: 1   MLSTSIPESSSSASAFRPTATLLSGFIQKPTSLSWPSSFSKLSISFVAIKAPSLSTHHRK 60

Query: 62  SLIKAAAWTRRSRGEAAKSGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVV 121
           SLI++A WTRRSRGEAAK GN+KSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVV
Sbjct: 61  SLIQSA-WTRRSRGEAAKRGNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVV 120

Query: 122 SAASTNCKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVI 181
           SAASTNCKDLRYSL SP+D+NACRIIGNLIAERCKEADVF MSYDPP MERIQ K+GIVI
Sbjct: 121 SAASTNCKDLRYSLLSPTDENACRIIGNLIAERCKEADVFVMSYDPPDMERIQGKIGIVI 180

Query: 182 DTIKENGIIFV 185
           DTIK+NGI+FV
Sbjct: 181 DTIKKNGILFV 190

[Close]

BLAST of IVF0009050 vs. NCBI nr
Match: XP_022147050.1 (uncharacterized protein LOC111016081 [Momordica charantia])

HSP 1 Score: 268 bits (686), Expect = 6.77e-89
Identity = 145/192 (75.52%), Postives = 159/192 (82.81%), Query Frame = 0


Query: 2   LLSTSIPESSSS--------ATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNT 61
           +LS +IPE  SS        A LL+ F+QKPTS SW SSF KL ISFDAI AP  STH+ 
Sbjct: 1   MLSLTIPEPLSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHDR 60

Query: 62  KSLIKAAAWTRRSRGEAAKSGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 121
            S I+AA WTRRSRGEAAK  N+KSWKQRTDMYMRPFVLDV+FSRRFIHAKVMHR TSKV
Sbjct: 61  NSFIRAA-WTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKV 120

Query: 122 VSAASTNCKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIV 181
           VSAASTN KDLRYSLPSP+DDNACRIIGN+IAERCKEADVF MSY+PP  ERI+ K+ IV
Sbjct: 121 VSAASTNSKDLRYSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIV 180

Query: 182 IDTIKENGIIFV 185
           IDTIKENGI+FV
Sbjct: 181 IDTIKENGILFV 191

[Close]

BLAST of IVF0009050 vs. TAIR 10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 192.2 bits (487), Expect = 3.7e-49
Identity = 105/180 (58.33%), Postives = 134/180 (74.44%), Query Frame = 0


Query: 6   SIPESSSSATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKSLIKAAAWTRR 65
           S+    S+ T  + F +  ++ SW SSF KLSI   ++ +  +     K     AAWTRR
Sbjct: 10  SLVPFDSNLTRSNRFTKLGSAVSWQSSFPKLSIEIGSVISSPIV---KKDSFVQAAWTRR 69

Query: 66  SRGEAAKSGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLR 125
           SRGEAAK  N+KSWKQRTDMYMRPF+L+V+FSR+FIHAKVMHR TSKV+S A+TN +D+R
Sbjct: 70  SRGEAAKRPNRKSWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIR 129

Query: 126 YSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKENGIIFV 185
            ++PS  D+ ACR+IG LIAER  EADV+A+SY+P   ERI+ K+GIVIDTIKE+GIIFV
Sbjct: 130 TNIPSLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGIIFV 186

[Close]

BLAST of IVF0009050 vs. TAIR 10
Match: AT1G08845.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 98.6 bits (244), Expect = 5.6e-21
Identity = 47/105 (44.76%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 78  SWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPSDDNAC 137
           S+KQRT  YM PF LDV+ S+RF+ A + HR T + V+ A TN KD++  L S  D  AC
Sbjct: 78  SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPAC 137

Query: 138 RIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKENGI 183
             IG +++ER KEADV+  SY P   ++ + K+  V+ ++ +NGI
Sbjct: 138 MSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 182

[Close]

BLAST of IVF0009050 vs. TAIR 10
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 98.6 bits (244), Expect = 5.6e-21
Identity = 47/105 (44.76%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 78  SWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPSDDNAC 137
           S+KQRT  YM PF LDV+ S+RF+ A + HR T + V+ A TN KD++  L S  D  AC
Sbjct: 123 SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPAC 182

Query: 138 RIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKENGI 183
             IG +++ER KEADV+  SY P   ++ + K+  V+ ++ +NGI
Sbjct: 183 MSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227

[Close]

BLAST of IVF0009050 vs. TAIR 10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 75.1 bits (183), Expect = 6.6e-14
Identity = 39/115 (33.91%), Postives = 68/115 (59.13%), Query Frame = 0


Query: 69  EAAKSGNKK-SWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYS 128
           EA K   +  ++ Q T  +  PF LD+Y S+  + A V+HR TSKVV+ A +  KD+++ 
Sbjct: 176 EAVKKRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFD 235

Query: 129 LPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKENGI 183
           L S  +  AC  +G ++A+R  E D+  + Y P   ++I+ K+ +V+  + +NG+
Sbjct: 236 LGSRRNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGV 290

[Close]

BLAST of IVF0009050 vs. TAIR 10
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-11
Identity = 33/97 (34.02%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 86  YMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPSDDNACRIIGNLIA 145
           Y++P+VL ++F+ +F+HA+V+H  T+ V  +AS+  K LR ++    D  A   IG ++ 
Sbjct: 15  YLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITRDVAAASKIGKILG 74

Query: 146 ERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKENGI 183
           ER    D+ A++      +R   KV  VID+++E G+
Sbjct: 75  ERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGV 111

The following BLAST results are available for this feature:

BLAST of IVF0009050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5P316	3.8e-06	31.40	50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=rp...	[more]
B5ZYV1	3.2e-05	33.33	50S ribosomal protein L18 OS=Rhizobium leguminosarum bv. trifolii (strain WSM230...	[more]
A9BG02	5.5e-05	28.10	50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) OX=4038...	[more]
B0U0X3	9.3e-05	31.18	50S ribosomal protein L18 OS=Francisella philomiragia subsp. philomiragia (strai...	[more]
Q11HR8	1.2e-04	33.33	50S ribosomal protein L18 OS=Chelativorans sp. (strain BNC1) OX=266779 GN=rplR P...	[more]

BLAST of IVF0009050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U4A4	1.9e-93	100.00	50S ribosomal protein L18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3AVM4	7.2e-93	99.46	50S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103483425 PE=4 SV=1	[more]
A0A0A0L7S5	1.7e-89	96.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127780 PE=4 SV=1	[more]
A0A6J1CZ23	1.6e-68	76.56	uncharacterized protein LOC111016081 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1FBY3	4.7e-68	77.08	uncharacterized protein LOC111444022 OS=Cucurbita moschata OX=3662 GN=LOC1114440...	[more]

BLAST of IVF0009050 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049096.1	6.72e-122	100.00	50S ribosomal protein L18-like [Cucumis melo var. makuwa] >TYK17467.1 50S riboso...	[more]
XP_008438261.1	3.89e-121	99.46	PREDICTED: 50S ribosomal protein L18-like [Cucumis melo]	[more]
XP_011650830.1	1.06e-116	96.77	uncharacterized protein LOC101221429 [Cucumis sativus] >KGN56667.1 hypothetical ...	[more]
XP_038905466.1	1.05e-101	84.82	50S ribosomal protein L18-like [Benincasa hispida]	[more]
XP_022147050.1	6.77e-89	75.52	uncharacterized protein LOC111016081 [Momordica charantia]	[more]

BLAST of IVF0009050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20230.1	3.7e-49	58.33	Ribosomal L18p/L5e family protein	[more]
AT1G08845.1	5.6e-21	44.76	Ribosomal L18p/L5e family protein	[more]
AT1G08845.2	5.6e-21	44.76	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	6.6e-14	33.91	Ribosomal L18p/L5e family protein	[more]
AT5G27820.1	1.8e-11	34.02	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 88..184 e-value: 5.0E-8 score: 33.3
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 13..184
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 42..185 e-value: 1.9E-17 score: 65.5
None	No IPR available	PANTHER	PTHR12899:SF16	OS02G0689700 PROTEIN	coord: 13..184
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 79..182 e-value: 2.89258E-18 score: 74.1135
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 86..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0009050.2	IVF0009050.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome