IVF0009048 (gene) Melon (IVF77) v1

Overview


Name	IVF0009048
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Small VCP/p97-interacting protein
Location	chr03: 26316568 .. 26318590 (-)
RNA-Seq Expression	IVF0009048
Synteny	IVF0009048

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTAAGCTGGAAAGGAAAAAGCGGATTATTTGACAACGGTGTCAGATAAGGTTGGGTGTTGTACACTCAATCCTAACCGTCCAATATAATTTTCGAATTACAAGAAAAGTCAAAATTCATAGTGAAAATACCAATTCAAGATCTTCGGGGGGGAAAAAACTGCAACTCCAAGCAAAGCGATGGGGCAATGCGTAAGTTGTTTAGACGAAGGTCAAAAGCAACAGAGAAAAGAGGAAGAACGATTGGCTTCCGTCGAAGCTCGCGCCAAAGCTGCTGAAGCCGCTCAGAGAAGGTTTTTTTTTTTTTTTTTTCCTTTTCCTTTTCCTTTAACTTTCGTTCCTCAATGTCTGTTCATCATGCTTCTTTTTTTATCACAACACCTTTTCATTTCTATTAGGGATTCCGTTGATCGTTTTGCCTTTTCAGTCGGTCCCCACAATTCCATTTTTGGCTGTGAACGTGAATTGTTTGGCATGTAACAGTTCTGCAGGGGAATGAATTATGTCTGAAAAATAATCGTACAACAGCTTGTTTGATTAGGGTTCTGTAGTTTGTCTACAAATTCCTTATAAAACTGTTCTTCTGAAAGTTTAATTTTACTTGGTAGTATGTAAAATTTAGCTACTGTTAGAATCATTGTTATGAAACCGATCCTTATTCTAGATCAGTTCAGTTTTATAAGCCTTCTTTTTCCAACAAAATTCAAAGTGCTATAAAGAAAAAACGAGAAGTTAGCAAGAAAAGAGAAACTAGGAGTGCTATAATTTGAGCTGATTGGATTGCTCCCACTAATTTTTACCTTATAAATGCCATTTGGTTTAAGTTGATTGCTTATTCATACCAAGGATGTGACTTGATAATGTATTGGCCATCAGTATTAGATTGAAATGTGAATTTCAAGTTAGGAACTTTGATGGGAATGATCCATGTGTTTTATACTTTTTTTTTAGATAAGAGATCCATGTGTTTTATACTGAAAGTGATATAAACATTTGCAGGCAAGAAGAGTTTGAAAAATCTGCTGCAGGAAGGGCTGCACGTGCTCAGTTGGCAGCAAATGCAAAGCAATCTGCTAACAATAACAAGGGCGAACCAGTTCTTAAGGTCAGTAAATTACCAGTTATTTTTCTTGTTTGTTAATTGTTGTAAATTGTATGGTCAGTTATATTTTTTTTCTTTATTGTTTGGGTGAGGGTGATGTATTATAGCTTAACCAATCCCATTACACATTCACTCGTAGAAGATCTTTCACTTTTAGACACAATTTATTAGAGCGTTTCAGTGGTAGGCGTTGTTTGCTAGCAGTTGTTATTATAGCAAGTGATTTTAAAACTTCCTTCTTGTTTTTGTGGATGCAGTGGAGTATGGGGTGAGGTCGTGCTCTATCGTCAGCTTTCACTGTAAGTGAAACTTCTGATCTGCTAAAGTTTAGTCAGCTCTTCTGCACATTATGTTTATCACTGTGAGATTATTGAAGTTTTGTAATAGTAAGATATTTTCATTTTATCTCACATTCCTGATTTCTAGGTAGCATTATAATAATCTCATCATGTATTGTGGTTCCTATTTTCCCTTGCATTGCAATATGATAAATCTTGTTCTATTCGCTACTAAGAAGCAAATTTCAATTGTGCAGTATGTTAATAAAAGGAAAAGATTGTATATTTATCCGCATTCCTTGGCTCCGCTCATGCCAGGCTACTTGTCTATATTCCCAAGTCTCCCAAGGCAGAAGTCATTGAATGGAGCTGCAGTCTTGTATTTGTTATACATTAATCAAGGAAACAAAAGTGTGCGAACTTTTATTTTTCGACAATGCTTTTCCGTGTAAATTTTTCCCTTAACTTGTTATGTCTCAGTCTCAACTTACAGTTCATCCATATTCAATTACTGTACAGACACTTTCCCTGCACCAACTTCATGTTTGGCTCTGTTGACAAAACTGCCCAATGATATTTGCTAAGACATGCCACTGTGCTTAACTTTGACATACAAATAAAATGTCGATTTTTTCTTTTTAAA

mRNA sequence

GTGTAAGCTGGAAAGGAAAAAGCGGATTATTTGACAACGGTGTCAGATAAGGTTGGGTGTTGTACACTCAATCCTAACCGTCCAATATAATTTTCGAATTACAAGAAAAGTCAAAATTCATAGTGAAAATACCAATTCAAGATCTTCGGGGGGGAAAAAACTGCAACTCCAAGCAAAGCGATGGGGCAATGCGTAAGTTGTTTAGACGAAGGTCAAAAGCAACAGAGAAAAGAGGAAGAACGATTGGCTTCCGTCGAAGCTCGCGCCAAAGCTGCTGAAGCCGCTCAGAGAAGGCAAGAAGAGTTTGAAAAATCTGCTGCAGGAAGGGCTGCACGTGCTCAGTTGGCAGCAAATGCAAAGCAATCTGCTAACAATAACAAGGGCGAACCAGTTCTTAAGTGGAGTATGGGGTGAGGTCGTGCTCTATCGTCAGCTTTCACTTATGTTAATAAAAGGAAAAGATTGTATATTTATCCGCATTCCTTGGCTCCGCTCATGCCAGGCTACTTGTCTATATTCCCAAGTCTCCCAAGGCAGAAGTCATTGAATGGAGCTGCAGTCTTGTATTTGTTATACATTAATCAAGGAAACAAAAGTGTGCGAACTTTTATTTTTCGACAATGCTTTTCCGTGTAAATTTTTCCCTTAACTTGTTATGTCTCAGTCTCAACTTACAGTTCATCCATATTCAATTACTGTACAGACACTTTCCCTGCACCAACTTCATGTTTGGCTCTGTTGACAAAACTGCCCAATGATATTTGCTAAGACATGCCACTGTGCTTAACTTTGACATACAAATAAAATGTCGATTTTTTCTTTTTAAA

Coding sequence (CDS)

ATGGGGCAATGCGTAAGTTGTTTAGACGAAGGTCAAAAGCAACAGAGAAAAGAGGAAGAACGATTGGCTTCCGTCGAAGCTCGCGCCAAAGCTGCTGAAGCCGCTCAGAGAAGGCAAGAAGAGTTTGAAAAATCTGCTGCAGGAAGGGCTGCACGTGCTCAGTTGGCAGCAAATGCAAAGCAATCTGCTAACAATAACAAGGGCGAACCAGTTCTTAAGTGGAGTATGGGGTGA

Protein sequence

MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAKQSANNNKGEPVLKWSMG

Homology

[Close]

BLAST of IVF0009048 vs. ExPASy TrEMBL
Match: A0A1S3BAJ0 (uncharacterized protein LOC103487833 OS=Cucumis melo OX=3656 GN=LOC103487833 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.2e-29
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANNNKGEPVLKWSMG 78
          QSAN NKGEPVLKWSMG
Sbjct: 61 QSANTNKGEPVLKWSMG 77

[Close]

BLAST of IVF0009048 vs. ExPASy TrEMBL
Match: A0A6J1KLT2 (uncharacterized protein LOC111496424 OS=Cucurbita maxima OX=3661 GN=LOC111496424 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.2e-27
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLDE QKQQRKEEERLASVEAR+KAAEAAQRRQEEFEKSAAGRAARAQ+AANAK
Sbjct: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60

Query: 61 QSANNNKGEPVLKWSMG 78
          QSAN NKGEPVLKWSMG
Sbjct: 61 QSANANKGEPVLKWSMG 77

[Close]

BLAST of IVF0009048 vs. ExPASy TrEMBL
Match: A0A6J1GGM5 (uncharacterized protein LOC111454028 OS=Cucurbita moschata OX=3662 GN=LOC111454028 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.2e-27
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLDE QKQQRKEEERLASVEAR+KAAEAAQRRQEEFEKSAAGRAARAQ+AANAK
Sbjct: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60

Query: 61 QSANNNKGEPVLKWSMG 78
          QSAN NKGEPVLKWSMG
Sbjct: 61 QSANANKGEPVLKWSMG 77

[Close]

BLAST of IVF0009048 vs. ExPASy TrEMBL
Match: A0A6J1K846 (uncharacterized protein LOC111492013 OS=Cucurbita maxima OX=3661 GN=LOC111492013 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.2e-27
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQC SCLDEGQ+Q+RKEEERLASVEARAKAAEAAQ+RQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCASCLDEGQEQERKEEERLASVEARAKAAEAAQKRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANNNKGEPVLKWSMG 78
          QSAN NKGEPVLKWSMG
Sbjct: 61 QSANTNKGEPVLKWSMG 77

[Close]

BLAST of IVF0009048 vs. ExPASy TrEMBL
Match: A0A6J1HEN1 (uncharacterized protein LOC111462843 OS=Cucurbita moschata OX=3662 GN=LOC111462843 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.2e-27
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQC SCLDEGQ+Q+RKEEERLASVEARAKAAEAAQ+RQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCASCLDEGQEQERKEEERLASVEARAKAAEAAQKRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANNNKGEPVLKWSMG 78
          QSAN NKGEPVLKWSMG
Sbjct: 61 QSANTNKGEPVLKWSMG 77

[Close]

BLAST of IVF0009048 vs. NCBI nr
Match: XP_008444542.1 (PREDICTED: uncharacterized protein LOC103487833 [Cucumis melo])

HSP 1 Score: 136 bits (342), Expect = 5.88e-40
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANNNKGEPVLKWSMG 77
          QSAN NKGEPVLKWSMG
Sbjct: 61 QSANTNKGEPVLKWSMG 77

[Close]

BLAST of IVF0009048 vs. NCBI nr
Match: XP_038886006.1 (uncharacterized protein LOC120076314 [Benincasa hispida])

HSP 1 Score: 135 bits (339), Expect = 1.69e-39
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLDEG+KQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANNNKGEPVLKWSMG 77
          QSAN NKGEPVLKWSMG
Sbjct: 61 QSANTNKGEPVLKWSMG 77

[Close]

BLAST of IVF0009048 vs. NCBI nr
Match: XP_022951067.1 (uncharacterized protein LOC111454028 [Cucurbita moschata] >XP_022951068.1 uncharacterized protein LOC111454028 [Cucurbita moschata] >XP_023002620.1 uncharacterized protein LOC111496424 [Cucurbita maxima] >XP_023002621.1 uncharacterized protein LOC111496424 [Cucurbita maxima] >XP_023537497.1 uncharacterized protein LOC111798519 [Cucurbita pepo subsp. pepo] >XP_023537499.1 uncharacterized protein LOC111798519 [Cucurbita pepo subsp. pepo] >XP_023537500.1 uncharacterized protein LOC111798519 [Cucurbita pepo subsp. pepo] >KAG6585707.1 hypothetical protein SDJN03_18440, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130 bits (328), Expect = 8.05e-38
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLDE QKQQRKEEERLASVEAR+KAAEAAQRRQEEFEKSAAGRAARAQ+AANAK
Sbjct: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60

Query: 61 QSANNNKGEPVLKWSMG 77
          QSAN NKGEPVLKWSMG
Sbjct: 61 QSANANKGEPVLKWSMG 77

[Close]

BLAST of IVF0009048 vs. NCBI nr
Match: XP_022962383.1 (uncharacterized protein LOC111462843 [Cucurbita moschata] >XP_022996925.1 uncharacterized protein LOC111492013 [Cucurbita maxima] >XP_023547040.1 uncharacterized protein LOC111805961 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130 bits (328), Expect = 8.05e-38
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQC SCLDEGQ+Q+RKEEERLASVEARAKAAEAAQ+RQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCASCLDEGQEQERKEEERLASVEARAKAAEAAQKRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANNNKGEPVLKWSMG 77
          QSAN NKGEPVLKWSMG
Sbjct: 61 QSANTNKGEPVLKWSMG 77

[Close]

BLAST of IVF0009048 vs. NCBI nr
Match: XP_011649565.1 (uncharacterized protein LOC101210682 [Cucumis sativus])

HSP 1 Score: 130 bits (327), Expect = 1.14e-37
Identity = 74/77 (96.10%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLD GQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCVSCLDVGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANNNKGEPVLKWSMG 77
          QSA  NKGEPVLKWSMG
Sbjct: 61 QSATANKGEPVLKWSMG 77

[Close]

BLAST of IVF0009048 vs. TAIR 10
Match: AT5G63905.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 100.1 bits (248), Expect = 8.0e-22
Identity = 57/73 (78.08%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 4  CVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAKQSA 63
          C SC D  QK+QRKEEER AS EARAKAAEAAQRR+E+F+KSAAGRAA+AQL   AKQSA
Sbjct: 3  CFSCFDGTQKEQRKEEERQASAEARAKAAEAAQRRKEQFDKSAAGRAAQAQLQQMAKQSA 62

Query: 64 NNNKGEPVLKWSM 77
          N NKGEPVLKW M
Sbjct: 63 NTNKGEPVLKWQM 75

The following BLAST results are available for this feature:

BLAST of IVF0009048 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0009048 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BAJ0	5.2e-29	98.70	uncharacterized protein LOC103487833 OS=Cucumis melo OX=3656 GN=LOC103487833 PE=...	[more]
A0A6J1KLT2	2.2e-27	94.81	uncharacterized protein LOC111496424 OS=Cucurbita maxima OX=3661 GN=LOC111496424...	[more]
A0A6J1GGM5	2.2e-27	94.81	uncharacterized protein LOC111454028 OS=Cucurbita moschata OX=3662 GN=LOC1114540...	[more]
A0A6J1K846	2.2e-27	93.51	uncharacterized protein LOC111492013 OS=Cucurbita maxima OX=3661 GN=LOC111492013...	[more]
A0A6J1HEN1	2.2e-27	93.51	uncharacterized protein LOC111462843 OS=Cucurbita moschata OX=3662 GN=LOC1114628...	[more]

BLAST of IVF0009048 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444542.1	5.88e-40	98.70	PREDICTED: uncharacterized protein LOC103487833 [Cucumis melo]	[more]
XP_038886006.1	1.69e-39	97.40	uncharacterized protein LOC120076314 [Benincasa hispida]	[more]
XP_022951067.1	8.05e-38	94.81	uncharacterized protein LOC111454028 [Cucurbita moschata] >XP_022951068.1 unchar...	[more]
XP_022962383.1	8.05e-38	93.51	uncharacterized protein LOC111462843 [Cucurbita moschata] >XP_022996925.1 unchar...	[more]
XP_011649565.1	1.14e-37	96.10	uncharacterized protein LOC101210682 [Cucumis sativus]	[more]

BLAST of IVF0009048 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63905.1	8.0e-22	78.08	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 8..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR36813:SF1	TRANSMEMBRANE PROTEIN	coord: 1..77
None	No IPR available	PANTHER	PTHR36813	TRANSMEMBRANE PROTEIN	coord: 1..77
IPR031632	Small VCP/p97-interacting protein	PFAM	PF15811	SVIP	coord: 1..73 e-value: 1.4E-12 score: 47.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0009048.2	IVF0009048.2	mRNA