IVF0008960 (gene) Melon (IVF77) v1

Overview


Name	IVF0008960
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	DNA/RNA polymerases superfamily protein
Location	chr01: 22163308 .. 22163760 (-)
RNA-Seq Expression	IVF0008960
Synteny	IVF0008960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTTTGGGTTGACTAATGCCCCTGCAGCCTTCATGAACTTGATGAGTCAGGTGTTTCATCCACACTTAGATCAATTTGTTATTGTGTTCATAGATGACATATTGGTTTATTCTGGGAGTAAAGAAAAGCATGTTGAACACCTCAGAATAGGGTTACAGACACTGCGACACCGAGAATTGTATGCTAAATTCAGTAAGTGCGAATTCTGGCTGGATTGGATAGTATTTTTGGTTCATGTGGTTTCAGCAGAAGGCATTTGTGTCGATCCTCGGAAAACTAAAGCAGTAGATAAGTGGGAAAGACCTACCTTCATCACTAAGATCCGAAGTTTTCTTGGTTTAATGGGGTATTATTGCCGATTTGTAGAAGGGTTTTCAAAATTGGCACTTCCCTTGACCAACCTAACAAGGAAGAATGTGAAGTTTGAATGGACAGATGCTTGTGAATAG

mRNA sequence

ATGCCCTTTGGGTTGACTAATGCCCCTGCAGCCTTCATGAACTTGATGAGTCAGGTGTTTCATCCACACTTAGATCAATTTGTTATTGTGTTCATAGATGACATATTGGTTTATTCTGGGAGTAAAGAAAAGCATGTTGAACACCTCAGAATAGGGTTACAGACACTGCGACACCGAGAATTGTATGCTAAATTCAGTAAGTGCGAATTCTGGCTGGATTGGATAGTATTTTTGGTTCATGTGGTTTCAGCAGAAGGCATTTGTGTCGATCCTCGGAAAACTAAAGCAGTAGATAAGTGGGAAAGACCTACCTTCATCACTAAGATCCGAAGTTTTCTTGGTTTAATGGGGTATTATTGCCGATTTGTAGAAGGGTTTTCAAAATTGGCACTTCCCTTGACCAACCTAACAAGGAAGAATGTGAAGTTTGAATGGACAGATGCTTGTGAATAG

Coding sequence (CDS)

ATGCCCTTTGGGTTGACTAATGCCCCTGCAGCCTTCATGAACTTGATGAGTCAGGTGTTTCATCCACACTTAGATCAATTTGTTATTGTGTTCATAGATGACATATTGGTTTATTCTGGGAGTAAAGAAAAGCATGTTGAACACCTCAGAATAGGGTTACAGACACTGCGACACCGAGAATTGTATGCTAAATTCAGTAAGTGCGAATTCTGGCTGGATTGGATAGTATTTTTGGTTCATGTGGTTTCAGCAGAAGGCATTTGTGTCGATCCTCGGAAAACTAAAGCAGTAGATAAGTGGGAAAGACCTACCTTCATCACTAAGATCCGAAGTTTTCTTGGTTTAATGGGGTATTATTGCCGATTTGTAGAAGGGTTTTCAAAATTGGCACTTCCCTTGACCAACCTAACAAGGAAGAATGTGAAGTTTGAATGGACAGATGCTTGTGAATAG

Protein sequence

MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE

Homology

[Close]

BLAST of IVF0008960 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.4e-27
Identity = 57/147 (38.78%), Postives = 92/147 (62.59%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRE 60
           MPFGL NAPA F   M+ +  P L++  +V++DDI+V+S S ++H++ L +  + L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLMGYYC 120
           L  +  KCEF      FL HV++ +GI  +P K +A+ K+  PT   +I++FLGL GYY 
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWTD 148
           +F+  F+ +A P+T   +KN+K + T+
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTN 480

[Close]

BLAST of IVF0008960 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.3e-25
Identity = 52/138 (37.68%), Postives = 86/138 (62.32%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRE 60
           +PFGL NAPA F  ++  +   H+ +   V+IDDI+V+S   + H ++LR+ L +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLMGYYC 120
           L     K  F    + FL ++V+A+GI  DP+K +A+ +   PT + +++ FLG+  YY 
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFVEGFSKLALPLTNLTR 139
           +F++ ++K+A PLTNLTR
Sbjct: 370 KFIQDYAKVAKPLTNLTR 387

[Close]

BLAST of IVF0008960 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.9e-24
Identity = 53/144 (36.81%), Postives = 86/144 (59.72%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRE 60
           MPFGL NAPA F   M+ +  P L++  +V++DDI+++S S  +H+  +++    L    
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLMGYYC 120
           L  +  KCEF      FL H+V+ +GI  +P K KA+  +  PT   +IR+FLGL GYY 
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFVEGFSKLALPLTNLTRKNVKFE 145
           +F+  ++ +A P+T+  +K  K +
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKID 476

[Close]

BLAST of IVF0008960 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.5e-21
Identity = 47/146 (32.19%), Postives = 86/146 (58.90%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRE 60
           MP+G++ APA F   ++ +     +  V+ ++DDIL++S S+ +HV+H++  LQ L++  
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLMGYYC 120
           L    +KCEF    + F+ + +S +G          V +W++P    ++R FLG + Y  
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWT 147
           +F+   S+L  PL NL +K+V+++WT
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWT 679

[Close]

BLAST of IVF0008960 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.5e-21
Identity = 47/146 (32.19%), Postives = 86/146 (58.90%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRE 60
           MP+G++ APA F   ++ +     +  V+ ++DDIL++S S+ +HV+H++  LQ L++  
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLMGYYC 120
           L    +KCEF    + F+ + +S +G          V +W++P    ++R FLG + Y  
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWT 147
           +F+   S+L  PL NL +K+V+++WT
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWT 679

[Close]

BLAST of IVF0008960 vs. ExPASy TrEMBL
Match: A0A5D3DT34 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00550 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.0e-77
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 11  AFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEF 70
           AFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEF
Sbjct: 371 AFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEF 430

Query: 71  WLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLMGYYCRFVEGFSKLA 130
           WLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLMGYYCRFVEGFSKLA
Sbjct: 431 WLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLMGYYCRFVEGFSKLA 490

Query: 131 LPLTNLTRKNVKFEWTDACE 151
           LPLTNLTRKNVKFEWTDACE
Sbjct: 491 LPLTNLTRKNVKFEWTDACE 510

[Close]

BLAST of IVF0008960 vs. ExPASy TrEMBL
Match: A0A5A7TG44 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006940 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.0e-76
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 11  AFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEF 70
           AFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEF
Sbjct: 371 AFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEF 430

Query: 71  WLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLMGYYCRFVEGFSKLA 130
           WLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGL GYYCRFVEGFSKLA
Sbjct: 431 WLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLTGYYCRFVEGFSKLA 490

Query: 131 LPLTNLTRKNVKFEWTDACE 151
           LPLTNLTRKNVKFEWTDACE
Sbjct: 491 LPLTNLTRKNVKFEWTDACE 510

[Close]

BLAST of IVF0008960 vs. ExPASy TrEMBL
Match: A0A5A7TXH8 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G00910 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.8e-62
Identity = 119/150 (79.33%), Postives = 131/150 (87.33%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRE 60
           M FGLTNAP AFM+LM+ VFHP+LDQFVI+FIDDILVYS SKEKH EHLRI  QTLR RE
Sbjct: 1   MLFGLTNAPTAFMDLMNLVFHPYLDQFVIMFIDDILVYSRSKEKHAEHLRIVWQTLRDRE 60

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLMGYYC 120
           LYAKFSKCEFWLD +++L HVVS EGICVDP+K +AV+KWERPT I +IRSFL L  YY 
Sbjct: 61  LYAKFSKCEFWLDRVIYLGHVVSVEGICVDPQKIEAVNKWERPTSIIEIRSFLSLARYYR 120

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWTDACE 151
           RFVEGFSKLAL LTNLT+KNVKFEWTDACE
Sbjct: 121 RFVEGFSKLALSLTNLTKKNVKFEWTDACE 150

[Close]

BLAST of IVF0008960 vs. ExPASy TrEMBL
Match: A0A1S4DXX5 (RNA-directed DNA polymerase homolog OS=Cucumis melo OX=3656 GN=LOC107991047 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.4e-62
Identity = 116/144 (80.56%), Postives = 131/144 (90.97%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRE 60
           MPFGLTNAP AFMNLM+ +FHP+LDQFVIVFIDDILVYSGSKEKHVEHL I LQ  + RE
Sbjct: 83  MPFGLTNAPIAFMNLMNPMFHPYLDQFVIVFIDDILVYSGSKEKHVEHLIIVLQIQQDRE 142

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLMGYYC 120
           LYAKF+KC+FWLDWI+FL H+VSAEGICVDP KT+AVDKWER T +T++RSFLGL+GYY 
Sbjct: 143 LYAKFNKCKFWLDWIIFLGHMVSAEGICVDPLKTEAVDKWERRTSVTEVRSFLGLVGYYR 202

Query: 121 RFVEGFSKLALPLTNLTRKNVKFE 145
           RFVEGFSKL LPLTNLT+KN+KFE
Sbjct: 203 RFVEGFSKLTLPLTNLTKKNMKFE 226

[Close]

BLAST of IVF0008960 vs. ExPASy TrEMBL
Match: A0A5A7T0V4 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G00160 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.1e-62
Identity = 121/149 (81.21%), Postives = 132/149 (88.59%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRE 60
           MPFGLTNAPAAFM+LM++VFH +LDQFVIVFIDDILVYS SKEKHVEHLRI LQTL  RE
Sbjct: 343 MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRE 402

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLMGYYC 120
           LYAKFSKCEFWLD +V L H+VS EGICVDP+K +A DK ERPT IT+I+SFLGL  YY 
Sbjct: 403 LYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYR 462

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWTDAC 150
           + VEGFSKLALPLTNLTRKNVKFEWTDAC
Sbjct: 463 QLVEGFSKLALPLTNLTRKNVKFEWTDAC 491

[Close]

BLAST of IVF0008960 vs. NCBI nr
Match: TYK26763.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 300 bits (767), Expect = 1.94e-97
Identity = 141/148 (95.27%), Postives = 142/148 (95.95%), Query Frame = 0


Query: 3   FGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELY 62
           F   +   AFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELY
Sbjct: 363 FSKIDLRLAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELY 422

Query: 63  AKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLMGYYCRF 122
           AKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLMGYYCRF
Sbjct: 423 AKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLMGYYCRF 482

Query: 123 VEGFSKLALPLTNLTRKNVKFEWTDACE 150
           VEGFSKLALPLTNLTRKNVKFEWTDACE
Sbjct: 483 VEGFSKLALPLTNLTRKNVKFEWTDACE 510

[Close]

BLAST of IVF0008960 vs. NCBI nr
Match: KAA0042193.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 297 bits (761), Expect = 1.55e-96
Identity = 140/148 (94.59%), Postives = 141/148 (95.27%), Query Frame = 0


Query: 3   FGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELY 62
           F   +   AFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELY
Sbjct: 363 FSKIDLRLAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELY 422

Query: 63  AKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLMGYYCRF 122
           AKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGL GYYCRF
Sbjct: 423 AKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLTGYYCRF 482

Query: 123 VEGFSKLALPLTNLTRKNVKFEWTDACE 150
           VEGFSKLALPLTNLTRKNVKFEWTDACE
Sbjct: 483 VEGFSKLALPLTNLTRKNVKFEWTDACE 510

[Close]

BLAST of IVF0008960 vs. NCBI nr
Match: XP_016900832.1 (PREDICTED: RNA-directed DNA polymerase homolog [Cucumis melo])

HSP 1 Score: 249 bits (637), Expect = 1.56e-81
Identity = 116/144 (80.56%), Postives = 131/144 (90.97%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRE 60
           MPFGLTNAP AFMNLM+ +FHP+LDQFVIVFIDDILVYSGSKEKHVEHL I LQ  + RE
Sbjct: 83  MPFGLTNAPIAFMNLMNPMFHPYLDQFVIVFIDDILVYSGSKEKHVEHLIIVLQIQQDRE 142

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLMGYYC 120
           LYAKF+KC+FWLDWI+FL H+VSAEGICVDP KT+AVDKWER T +T++RSFLGL+GYY 
Sbjct: 143 LYAKFNKCKFWLDWIIFLGHMVSAEGICVDPLKTEAVDKWERRTSVTEVRSFLGLVGYYR 202

Query: 121 RFVEGFSKLALPLTNLTRKNVKFE 144
           RFVEGFSKL LPLTNLT+KN+KFE
Sbjct: 203 RFVEGFSKLTLPLTNLTKKNMKFE 226

[Close]

BLAST of IVF0008960 vs. NCBI nr
Match: KAA0060259.1 (RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa] >TYJ95990.1 RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 247 bits (630), Expect = 3.39e-78
Identity = 115/143 (80.42%), Postives = 129/143 (90.21%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRE 60
           MPFGLTNAP AFMNLM+ +FHP+LDQFVIVFIDDILVY G+KEKHVEHL I LQ  + RE
Sbjct: 241 MPFGLTNAPIAFMNLMNPMFHPYLDQFVIVFIDDILVYFGNKEKHVEHLIIVLQIQQDRE 300

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLMGYYC 120
           LY KFSKCEFWLDWI+FL H+VSAEGICVDP KT+AVDKWER T +T++RSFLGL+GYY 
Sbjct: 301 LYVKFSKCEFWLDWIIFLGHMVSAEGICVDPLKTEAVDKWERRTSVTEVRSFLGLVGYYR 360

Query: 121 RFVEGFSKLALPLTNLTRKNVKF 143
           RFVEGFSKLALPLTNLT+KN+KF
Sbjct: 361 RFVEGFSKLALPLTNLTKKNMKF 383

[Close]

BLAST of IVF0008960 vs. NCBI nr
Match: KAA0047618.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 249 bits (636), Expect = 7.62e-78
Identity = 119/150 (79.33%), Postives = 131/150 (87.33%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRE 60
           M FGLTNAP AFM+LM+ VFHP+LDQFVI+FIDDILVYS SKEKH EHLRI  QTLR RE
Sbjct: 1   MLFGLTNAPTAFMDLMNLVFHPYLDQFVIMFIDDILVYSRSKEKHAEHLRIVWQTLRDRE 60

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLMGYYC 120
           LYAKFSKCEFWLD +++L HVVS EGICVDP+K +AV+KWERPT I +IRSFL L  YY 
Sbjct: 61  LYAKFSKCEFWLDRVIYLGHVVSVEGICVDPQKIEAVNKWERPTSIIEIRSFLSLARYYR 120

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWTDACE 150
           RFVEGFSKLAL LTNLT+KNVKFEWTDACE
Sbjct: 121 RFVEGFSKLALSLTNLTKKNVKFEWTDACE 150

[Close]

BLAST of IVF0008960 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-17
Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = 0


Query: 46  VEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFL--VHVVSAEGICVDPRKTKAVDKWERP 105
           + HL + LQ     + YA   KC F    I +L   H++S EG+  DP K +A+  W  P
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 106 TFITKIRSFLGLMGYYCRFVEGFSKLALPLTNLTRKNVKFEWTD 148
              T++R FLGL GYY RFV+ + K+  PLT L +KN   +WT+
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTE 103

The following BLAST results are available for this feature:

BLAST of IVF0008960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	1.4e-27	38.78	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	2.3e-25	37.68	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P20825	1.9e-24	36.81	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P0CT41	7.5e-21	32.19	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	7.5e-21	32.19	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of IVF0008960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DT34	2.0e-77	100.00	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7TG44	1.0e-76	99.29	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7TXH8	1.8e-62	79.33	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S4DXX5	2.4e-62	80.56	RNA-directed DNA polymerase homolog OS=Cucumis melo OX=3656 GN=LOC107991047 PE=4...	[more]
A0A5A7T0V4	3.1e-62	81.21	Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of IVF0008960 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK26763.1	1.94e-97	95.27	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0042193.1	1.55e-96	94.59	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
XP_016900832.1	1.56e-81	80.56	PREDICTED: RNA-directed DNA polymerase homolog [Cucumis melo]	[more]
KAA0060259.1	3.39e-78	80.42	RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa] >TYJ95990.1 ...	[more]
KAA0047618.1	7.62e-78	79.33	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0008960 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.8e-17	40.38	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 92..150 e-value: 4.7E-19 score: 70.2
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..87 e-value: 2.8E-27 score: 97.2
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..72 e-value: 5.4E-13 score: 49.0
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..117 score: 9.203601
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 18..148
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 18..148
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 1.00271E-32 score: 112.304
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0008960.1	IVF0008960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding