IVF0008849 (gene) Melon (IVF77) v1

Overview


Name	IVF0008849
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	CST complex subunit STN1
Location	chr05: 4021427 .. 4022370 (+)
RNA-Seq Expression	IVF0008849
Synteny	IVF0008849

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGGGACTTAGGAATAGAGTAAAGTAAGATGCGGTGGCCCCTAAAGACATTGACTTCTTTTGTCAGATGTCTCTTCTTTTTCGTAGCCCTTTCTCAATCTTCTTAATGGGCCTATTTATGAACTTCAATTGGGCTCTCATTGATCTACAAAAAAAAAGCCCATTGGGCTAAAAATTTAACTCAACCACAACCGGAGAAACTACACATTAGGTTTCCGATGAACCAACGGCAACGTTTCTCGTTCTCCCTCTACCAAACCCATGTCAAGCTTCTTGGTTTCGACCTAAATTCCCTCAACCAAAATTCCTCTTCTGATTCAGTTTCTTTCTCTCGCAAAGGCTATGCCGTTTCCTGTACAGAGATCGTCGGCGTTGTGGTCTTCCGTGACCTGAAGCCTAACAGGTTTCTCAAATTCTCCGTTGACGATGGTACTGCATGTGTTGGTTGTATCCTGTGGCTAAATCATCTCACATCGTCTTATTTTGCTTCACGCCATCACCCAGATGTTCGAATTCTGGCAGATATGGCGACCCATTTCGCAGCCCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGAGGGAAATTGAGCAGCTATAGGGGAATGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAAGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTGGCTATGAAGTGTTATGACCTCTCCCCTATACCCACTTAGCTGTAGATTCCAATGGCTTTAAAATGCTATCTCTCGTTTTCTGATCTCCCTTTTTTCTTTTTCCTTTCTGAAATGCTGAAAAGATTCCACTTTTTGTTGTTTACTGTACATAATTTTGCTCAACAGCTTGGCCTTCGAAATGATTGTTTAATAATATTGAAATTAAGTTGCTACTACCGACTCTGTTTACTGTTTAGTTTGATGAGAATTGGTAATGTT

mRNA sequence

GTTGGGACTTAGGAATAGAGTAAAGTAAGATGCGGTGGCCCCTAAAGACATTGACTTCTTTTGTCAGATGTCTCTTCTTTTTCGTAGCCCTTTCTCAATCTTCTTAATGGGCCTATTTATGAACTTCAATTGGGCTCTCATTGATCTACAAAAAAAAAGCCCATTGGGCTAAAAATTTAACTCAACCACAACCGGAGAAACTACACATTAGGTTTCCGATGAACCAACGGCAACGTTTCTCGTTCTCCCTCTACCAAACCCATGTCAAGCTTCTTGGTTTCGACCTAAATTCCCTCAACCAAAATTCCTCTTCTGATTCAGTTTCTTTCTCTCGCAAAGGCTATGCCGTTTCCTGTACAGAGATCGTCGGCGTTGTGGTCTTCCGTGACCTGAAGCCTAACAGGTTTCTCAAATTCTCCGTTGACGATGGTACTGCATGTGTTGGTTGTATCCTGTGGCTAAATCATCTCACATCGTCTTATTTTGCTTCACGCCATCACCCAGATGTTCGAATTCTGGCAGATATGGCGACCCATTTCGCAGCCCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGAGGGAAATTGAGCAGCTATAGGGGAATGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAAGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTGGCTATGAAGTGTTATGACCTCTCCCCTATACCCACTTAGCTGTAGATTCCAATGGCTTTAAAATGCTATCTCTCGTTTTCTGATCTCCCTTTTTTCTTTTTCCTTTCTGAAATGCTGAAAAGATTCCACTTTTTGTTGTTTACTGTACATAATTTTGCTCAACAGCTTGGCCTTCGAAATGATTGTTTAATAATATTGAAATTAAGTTGCTACTACCGACTCTGTTTACTGTTTAGTTTGATGAGAATTGGTAATGTT

Coding sequence (CDS)

ATGAACCAACGGCAACGTTTCTCGTTCTCCCTCTACCAAACCCATGTCAAGCTTCTTGGTTTCGACCTAAATTCCCTCAACCAAAATTCCTCTTCTGATTCAGTTTCTTTCTCTCGCAAAGGCTATGCCGTTTCCTGTACAGAGATCGTCGGCGTTGTGGTCTTCCGTGACCTGAAGCCTAACAGGTTTCTCAAATTCTCCGTTGACGATGGTACTGCATGTGTTGGTTGTATCCTGTGGCTAAATCATCTCACATCGTCTTATTTTGCTTCACGCCATCACCCAGATGTTCGAATTCTGGCAGATATGGCGACCCATTTCGCAGCCCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGAGGGAAATTGAGCAGCTATAGGGGAATGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAAGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTGGCTATGAAGTGTTATGACCTCTCCCCTATACCCACTTAG

Protein sequence

MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT

Homology

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BLAST of IVF0008849 vs. ExPASy Swiss-Prot
Match: Q9LMK5 (CST complex subunit STN1 OS=Arabidopsis thaliana OX=3702 GN=STN1 PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.3e-37
Identity = 84/153 (54.90%), Postives = 104/153 (67.97%), Query Frame = 0


Query: 10  SLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYA-VSCTEIVGVVVFRDLKPNRFLKFSV 69
           SL  TH KL+  D+  L Q S ++S SFS  G A VS  EIVG +V RDL P +FLKF V
Sbjct: 4   SLQSTHAKLVARDIQRLTQ-SPTESNSFSLLGGACVSRVEIVGTIVSRDLTP-KFLKFGV 63

Query: 70  DDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYRG 129
           DDGT CV C++WLN LTSSYF+      + +LA  A   AAQIR+G V RVRG++ SYRG
Sbjct: 64  DDGTGCVTCVMWLNQLTSSYFSRWDPATILLLASAARKQAAQIRIGAVARVRGRVGSYRG 123

Query: 130 MVQITVSDVVVEDDPNAEILHWLDSMRLAMKCY 162
           ++QIT +  V E DPNAEILHWL+ ++L   CY
Sbjct: 124 VMQITANVAVAERDPNAEILHWLECLKLGQSCY 154

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BLAST of IVF0008849 vs. ExPASy Swiss-Prot
Match: Q08DB2 (CST complex subunit STN1 OS=Bos taurus OX=9913 GN=STN1 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.4e-06
Identity = 44/164 (26.83%), Postives = 73/164 (44.51%), Query Frame = 0


Query: 11  LYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDD 70
           ++    KL   D+  L ++     V F   G+ +   +I+G V+    K + F  + VDD
Sbjct: 22  VFLAFAKLYIRDILDLKESGQVQGV-FFYNGHPIKQVDILGTVIGVREK-DAFYSYGVDD 81

Query: 71  GTACVGCILW--LNHLTSSYFASRHHPDVRILA--------DMATHFAAQIRVGIVVRVR 130
            T  + CI W  LN+  SS  ++   P  R L+               A++ +G ++RVR
Sbjct: 82  STGVINCICWKRLNNTKSS--SATATPSARELSLTSQLKKLQETIAQRAKLEIGDIIRVR 141

Query: 131 GKLSSYRGMVQITVSDVVVEDDP--NAEILHWLDSMRLAMKCYD 163
           G +  +RG  +I  +     DDP  N +I   L+   +  K YD
Sbjct: 142 GHIRMFRGEREIHATTYYKVDDPVCNVQIARMLELPAIYRKVYD 181

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BLAST of IVF0008849 vs. ExPASy TrEMBL
Match: A0A5D3E3H2 (CST complex subunit STN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001150 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.4e-90
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60
           MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP
Sbjct: 1   MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60

Query: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVR 120
           NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVR
Sbjct: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVR 120

Query: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT 169
           GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT
Sbjct: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT 168

[Close]

BLAST of IVF0008849 vs. ExPASy TrEMBL
Match: A0A1S3BLT5 (CST complex subunit STN1 OS=Cucumis melo OX=3656 GN=LOC103491245 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.4e-90
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60
           MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP
Sbjct: 51  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 110

Query: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVR 120
           NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVR
Sbjct: 111 NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVR 170

Query: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT 169
           GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT
Sbjct: 171 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT 218

[Close]

BLAST of IVF0008849 vs. ExPASy TrEMBL
Match: A0A0A0LNV0 (OB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G223720 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 9.2e-87
Identity = 162/168 (96.43%), Postives = 163/168 (97.02%), Query Frame = 0


Query: 1   MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60
           MNQR+RFSFSLYQTHVKLL FDLNSLNQ SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP
Sbjct: 1   MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60

Query: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVR 120
           NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHH DVRIL DMATHFAAQIRVGIVVRVR
Sbjct: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVR 120

Query: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT 169
           GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSP PT
Sbjct: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT 168

[Close]

BLAST of IVF0008849 vs. ExPASy TrEMBL
Match: A0A6J1HFA9 (LOW QUALITY PROTEIN: CST complex subunit STN1 OS=Cucurbita moschata OX=3662 GN=LOC111463780 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 9.9e-73
Identity = 138/170 (81.18%), Postives = 154/170 (90.59%), Query Frame = 0


Query: 1   MNQRQRFSFSLYQTHVKLLGFDLNSLNQ---NSSSDSVSFSRKGYAVSCTEIVGVVVFRD 60
           MNQ++  +FSLY TH+KLLGFDLNSL Q   +SSSD+VSFSR+GYAVSC EIVGVVVFRD
Sbjct: 41  MNQQR--AFSLYHTHIKLLGFDLNSLTQSASSSSSDAVSFSRRGYAVSCVEIVGVVVFRD 100

Query: 61  LKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVV 120
           LKPNRFL+FSVDDGT CV CILWLNHLTS YFASRH PDVRI+ +MATHFAAQIRVGIV 
Sbjct: 101 LKPNRFLRFSVDDGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQIRVGIVA 160

Query: 121 RVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIP 168
           RVRG++SSYRG+VQ+TVSDVVVE+DPNAEILHWLD MRLA+KCYDLSP P
Sbjct: 161 RVRGRVSSYRGVVQMTVSDVVVENDPNAEILHWLDCMRLALKCYDLSPAP 208

[Close]

BLAST of IVF0008849 vs. ExPASy TrEMBL
Match: A0A6J1HUX0 (CST complex subunit STN1 OS=Cucurbita maxima OX=3661 GN=LOC111466921 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.7e-64
Identity = 127/157 (80.89%), Postives = 141/157 (89.81%), Query Frame = 0


Query: 1   MNQRQRFSFSLYQTHVKLLGFDLNSLNQ---NSSSDSVSFSRKGYAVSCTEIVGVVVFRD 60
           MNQ++  +FSLY TH+KLLGFDLNSL Q   +SSSD+VSFSR+G+AVSC EIVGVVV RD
Sbjct: 19  MNQQR--AFSLYHTHIKLLGFDLNSLTQSSSSSSSDAVSFSRRGFAVSCAEIVGVVVSRD 78

Query: 61  LKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVV 120
           LKPNRFL+FSVDDGT CV CILWLNHLTS YFASRH PDVRI+ +MATHFAAQIRVGIV 
Sbjct: 79  LKPNRFLRFSVDDGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQIRVGIVA 138

Query: 121 RVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSM 155
           RVRGK+SSYRG+VQITVSDVVVE+DPNAEILHWLD M
Sbjct: 139 RVRGKVSSYRGVVQITVSDVVVENDPNAEILHWLDCM 173

[Close]

BLAST of IVF0008849 vs. NCBI nr
Match: KAA0057432.1 (CST complex subunit STN1 [Cucumis melo var. makuwa] >TYK30131.1 CST complex subunit STN1 [Cucumis melo var. makuwa])

HSP 1 Score: 342 bits (877), Expect = 1.20e-118
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60
           MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP
Sbjct: 1   MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60

Query: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVR 120
           NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVR
Sbjct: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVR 120

Query: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT 168
           GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT
Sbjct: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT 168

[Close]

BLAST of IVF0008849 vs. NCBI nr
Match: XP_008449339.1 (PREDICTED: CST complex subunit STN1 [Cucumis melo])

HSP 1 Score: 342 bits (877), Expect = 6.94e-118
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60
           MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP
Sbjct: 51  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 110

Query: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVR 120
           NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVR
Sbjct: 111 NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVR 170

Query: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT 168
           GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT
Sbjct: 171 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT 218

[Close]

BLAST of IVF0008849 vs. NCBI nr
Match: XP_004145384.1 (CST complex subunit STN1 [Cucumis sativus] >KGN61681.1 hypothetical protein Csa_006421 [Cucumis sativus])

HSP 1 Score: 329 bits (844), Expect = 1.29e-113
Identity = 162/168 (96.43%), Postives = 163/168 (97.02%), Query Frame = 0


Query: 1   MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60
           MNQR+RFSFSLYQTHVKLL FDLNSLNQ SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP
Sbjct: 1   MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60

Query: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVR 120
           NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHH DVRIL DMATHFAAQIRVGIVVRVR
Sbjct: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVR 120

Query: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT 168
           GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSP PT
Sbjct: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT 168

[Close]

BLAST of IVF0008849 vs. NCBI nr
Match: XP_023553655.1 (CST complex subunit STN1 [Cucurbita pepo subsp. pepo] >XP_023553656.1 CST complex subunit STN1 [Cucurbita pepo subsp. pepo] >XP_023553657.1 CST complex subunit STN1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 284 bits (726), Expect = 1.31e-95
Identity = 139/170 (81.76%), Postives = 154/170 (90.59%), Query Frame = 0


Query: 1   MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSS---DSVSFSRKGYAVSCTEIVGVVVFRD 60
           MNQ++  +FSLY TH+KLLGFDLNSL Q+SSS   D+VSFSR+GYAVSC E+VGVVVFRD
Sbjct: 1   MNQQR--AFSLYHTHIKLLGFDLNSLAQSSSSSSSDAVSFSRRGYAVSCVEVVGVVVFRD 60

Query: 61  LKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVV 120
           LKPNRFL+FSVDDGT CV CILWLNHLTS YFASRH PDVRI+ +MATHFAAQIRVGIV 
Sbjct: 61  LKPNRFLRFSVDDGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQIRVGIVA 120

Query: 121 RVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIP 167
           RVRGK+SSYRG+VQITVSDVVVE+DPNAEILHWLD MRLA+KCYDLSP P
Sbjct: 121 RVRGKVSSYRGVVQITVSDVVVENDPNAEILHWLDCMRLALKCYDLSPAP 168

[Close]

BLAST of IVF0008849 vs. NCBI nr
Match: KAG7011223.1 (CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 282 bits (722), Expect = 5.51e-95
Identity = 139/171 (81.29%), Postives = 153/171 (89.47%), Query Frame = 0


Query: 1   MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSS----DSVSFSRKGYAVSCTEIVGVVVFR 60
           MNQ++  +FSLY TH+KLLGFDLNSL Q+SSS    D+VSFSR+GYAVSC EIVGVVVFR
Sbjct: 1   MNQQR--AFSLYHTHIKLLGFDLNSLTQSSSSSSSSDAVSFSRRGYAVSCVEIVGVVVFR 60

Query: 61  DLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIV 120
           DLKPNRFL+FSVDDGT CV CILWLNHLTS YFA RH PDVRI+ +MATHFAAQIRVGIV
Sbjct: 61  DLKPNRFLRFSVDDGTGCVSCILWLNHLTSPYFALRHQPDVRIIGNMATHFAAQIRVGIV 120

Query: 121 VRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIP 167
            RVRGK+SSYRG+VQITVSDVVVE+DPNAEILHWLD MRLA+KCYDLSP P
Sbjct: 121 ARVRGKVSSYRGVVQITVSDVVVENDPNAEILHWLDCMRLALKCYDLSPAP 169

[Close]

BLAST of IVF0008849 vs. TAIR 10
Match: AT1G07130.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 157.5 bits (397), Expect = 9.2e-39
Identity = 84/153 (54.90%), Postives = 104/153 (67.97%), Query Frame = 0


Query: 10  SLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYA-VSCTEIVGVVVFRDLKPNRFLKFSV 69
           SL  TH KL+  D+  L Q S ++S SFS  G A VS  EIVG +V RDL P +FLKF V
Sbjct: 4   SLQSTHAKLVARDIQRLTQ-SPTESNSFSLLGGACVSRVEIVGTIVSRDLTP-KFLKFGV 63

Query: 70  DDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYRG 129
           DDGT CV C++WLN LTSSYF+      + +LA  A   AAQIR+G V RVRG++ SYRG
Sbjct: 64  DDGTGCVTCVMWLNQLTSSYFSRWDPATILLLASAARKQAAQIRIGAVARVRGRVGSYRG 123

Query: 130 MVQITVSDVVVEDDPNAEILHWLDSMRLAMKCY 162
           ++QIT +  V E DPNAEILHWL+ ++L   CY
Sbjct: 124 VMQITANVAVAERDPNAEILHWLECLKLGQSCY 154

[Close]

BLAST of IVF0008849 vs. TAIR 10
Match: AT2G24490.1 (replicon protein A2 )

HSP 1 Score: 42.0 bits (97), Expect = 5.6e-04
Identity = 30/123 (24.39%), Postives = 53/123 (43.09%), Query Frame = 0


Query: 30  SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYF 89
           SS +       G +++   +VG+V  +D      ++F++DDGT  + C  W+    S  F
Sbjct: 56  SSGEKSGLVINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWV----SETF 115

Query: 90  ASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILH 149
            +R                  +R G  VR+ G L +++G  Q+ V  V    D N    H
Sbjct: 116 DARE--------------MESVRDGTYVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFH 160

Query: 150 WLD 153
           +++
Sbjct: 176 YIE 160

[Close]

BLAST of IVF0008849 vs. TAIR 10
Match: AT2G24490.2 (replicon protein A2 )

HSP 1 Score: 42.0 bits (97), Expect = 5.6e-04
Identity = 30/123 (24.39%), Postives = 53/123 (43.09%), Query Frame = 0


Query: 30  SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYF 89
           SS +       G +++   +VG+V  +D      ++F++DDGT  + C  W+    S  F
Sbjct: 56  SSGEKSGLVINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWV----SETF 115

Query: 90  ASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILH 149
            +R                  +R G  VR+ G L +++G  Q+ V  V    D N    H
Sbjct: 116 DARE--------------MESVRDGTYVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFH 160

Query: 150 WLD 153
           +++
Sbjct: 176 YIE 160

The following BLAST results are available for this feature:

BLAST of IVF0008849 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LMK5	1.3e-37	54.90	CST complex subunit STN1 OS=Arabidopsis thaliana OX=3702 GN=STN1 PE=1 SV=1	[more]
Q08DB2	3.4e-06	26.83	CST complex subunit STN1 OS=Bos taurus OX=9913 GN=STN1 PE=2 SV=1	[more]

BLAST of IVF0008849 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E3H2	1.4e-90	100.00	CST complex subunit STN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3BLT5	1.4e-90	100.00	CST complex subunit STN1 OS=Cucumis melo OX=3656 GN=LOC103491245 PE=4 SV=1	[more]
A0A0A0LNV0	9.2e-87	96.43	OB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G223720 PE=4 SV=...	[more]
A0A6J1HFA9	9.9e-73	81.18	LOW QUALITY PROTEIN: CST complex subunit STN1 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1HUX0	1.7e-64	80.89	CST complex subunit STN1 OS=Cucurbita maxima OX=3661 GN=LOC111466921 PE=4 SV=1	[more]

BLAST of IVF0008849 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057432.1	1.20e-118	100.00	CST complex subunit STN1 [Cucumis melo var. makuwa] >TYK30131.1 CST complex subu...	[more]
XP_008449339.1	6.94e-118	100.00	PREDICTED: CST complex subunit STN1 [Cucumis melo]	[more]
XP_004145384.1	1.29e-113	96.43	CST complex subunit STN1 [Cucumis sativus] >KGN61681.1 hypothetical protein Csa_...	[more]
XP_023553655.1	1.31e-95	81.76	CST complex subunit STN1 [Cucurbita pepo subsp. pepo] >XP_023553656.1 CST comple...	[more]
KAG7011223.1	5.51e-95	81.29	CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of IVF0008849 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07130.1	9.2e-39	54.90	Nucleic acid-binding, OB-fold-like protein	[more]
AT2G24490.1	5.6e-04	24.39	replicon protein A2	[more]
AT2G24490.2	5.6e-04	24.39	replicon protein A2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004365	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	PFAM	PF01336	tRNA_anti-codon	coord: 49..138 e-value: 5.8E-8 score: 32.6
None	No IPR available	GENE3D	2.40.50.140		coord: 10..164 e-value: 2.9E-26 score: 93.9
None	No IPR available	PANTHER	PTHR13989:SF33	CST COMPLEX SUBUNIT STN1	coord: 10..164
IPR040260	Replication factor A protein-like	PANTHER	PTHR13989	REPLICATION PROTEIN A-RELATED	coord: 10..164
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 39..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0008849.1	IVF0008849.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003676	nucleic acid binding