IVF0008848 (gene) Melon (IVF77) v1

Overview
NameIVF0008848
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr01: 1350325 .. 1350930 (-)
RNA-Seq ExpressionIVF0008848
SyntenyIVF0008848
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTATTATTCTAAACAATGGCTCGTTTTACTCTTCTCGTTGCTTTTCTTGCCACATTGCTTCTTTCAAGCTTGAGTTCTTCTTCCTCTTTCTCCTCCTCCTCCACTATCGTATCTCGTAAGCTCTTGGCTTCGGATTTTCCGGAGCTCCCGGATTTCAATGTGCCACCATTTTACCCTGAATTCAGATTGCCTCCTCCACTTACATTTTTTGGTCCGAATACTCCTTCTTCCATCTTTCCCAACTTCCCATTTTTCTCTCCACCATCTAATCCTTCTCCTTGACCAGAAACTGAGCTTAATTCTCTGATAAACACTCTCTCTTCTCTCCCTAGCTCTCTTTCTATGTGGGTTATTTGGTGGTATTGTTATGGATGAAAAATAATGGGACTTCTGTTTAGTTTTCTTTTTTTCTCTAAGTTTTCAATGGAAGCTCAAGAGGAAGAGCTGACTCTTAATATGTAATCCTCAAAAACAGGGTGTGAAAGTGCACATTTGATTCCATGCATTTGTGTCTGTGTCACTTTTTCCTGTTTATTTGTGTGGAAATAATGATATGTTATCATATTATTATGGAATAAGAATTTAATATATAGTTGTGTGCAAA

mRNA sequence

CATTATTATTCTAAACAATGGCTCGTTTTACTCTTCTCGTTGCTTTTCTTGCCACATTGCTTCTTTCAAGCTTGAGTTCTTCTTCCTCTTTCTCCTCCTCCTCCACTATCGTATCTCGTAAGCTCTTGGCTTCGGATTTTCCGGAGCTCCCGGATTTCAATGTGCCACCATTTTACCCTGAATTCAGATTGCCTCCTCCACTTACATTTTTTGGTCCGAATACTCCTTCTTCCATCTTTCCCAACTTCCCATTTTTCTCTCCACCATCTAATCCTTCTCCTTGACCAGAAACTGAGCTTAATTCTCTGATAAACACTCTCTCTTCTCTCCCTAGCTCTCTTTCTATGTGGGTTATTTGGTGGTATTGTTATGGATGAAAAATAATGGGACTTCTGTTTAGTTTTCTTTTTTTCTCTAAGTTTTCAATGGAAGCTCAAGAGGAAGAGCTGACTCTTAATATGTAATCCTCAAAAACAGGGTGTGAAAGTGCACATTTGATTCCATGCATTTGTGTCTGTGTCACTTTTTCCTGTTTATTTGTGTGGAAATAATGATATGTTATCATATTATTATGGAATAAGAATTTAATATATAGTTGTGTGCAAA

Coding sequence (CDS)

ATGGCTCGTTTTACTCTTCTCGTTGCTTTTCTTGCCACATTGCTTCTTTCAAGCTTGAGTTCTTCTTCCTCTTTCTCCTCCTCCTCCACTATCGTATCTCGTAAGCTCTTGGCTTCGGATTTTCCGGAGCTCCCGGATTTCAATGTGCCACCATTTTACCCTGAATTCAGATTGCCTCCTCCACTTACATTTTTTGGTCCGAATACTCCTTCTTCCATCTTTCCCAACTTCCCATTTTTCTCTCCACCATCTAATCCTTCTCCTTGA

Protein sequence

MARFTLLVAFLATLLLSSLSSSSSFSSSSTIVSRKLLASDFPELPDFNVPPFYPEFRLPPPLTFFGPNTPSSIFPNFPFFSPPSNPSP
Homology
BLAST of IVF0008848 vs. ExPASy TrEMBL
Match: A0A0A0K7G8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G066190 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.2e-31
Identity = 79/88 (89.77%), Postives = 84/88 (95.45%), Query Frame = 0

Query: 1  MARFTLLVAFLATLLLSSLSSSSSFSSSSTIVSRKLLASDFPELPDFNVPPFYPEFRLPP 60
          MARFTLL+AF+ATLLLSSLSSSSS SSSS IVSRKLLASDFP LPDFNVPPFYPEF+LPP
Sbjct: 1  MARFTLLIAFVATLLLSSLSSSSS-SSSSIIVSRKLLASDFPGLPDFNVPPFYPEFKLPP 60

Query: 61 PLTFFGPNTPSSIFPNFPFFSPPSNPSP 89
          P +FFGPNTPSSIFPNFPFFSPP+NPSP
Sbjct: 61 PFSFFGPNTPSSIFPNFPFFSPPTNPSP 87

BLAST of IVF0008848 vs. NCBI nr
Match: KGN43761.1 (hypothetical protein Csa_017175 [Cucumis sativus])

HSP 1 Score: 143 bits (361), Expect = 1.57e-42
Identity = 79/88 (89.77%), Postives = 84/88 (95.45%), Query Frame = 0

Query: 1  MARFTLLVAFLATLLLSSLSSSSSFSSSSTIVSRKLLASDFPELPDFNVPPFYPEFRLPP 60
          MARFTLL+AF+ATLLLSSLSSSSS SSSS IVSRKLLASDFP LPDFNVPPFYPEF+LPP
Sbjct: 1  MARFTLLIAFVATLLLSSLSSSSS-SSSSIIVSRKLLASDFPGLPDFNVPPFYPEFKLPP 60

Query: 61 PLTFFGPNTPSSIFPNFPFFSPPSNPSP 88
          P +FFGPNTPSSIFPNFPFFSPP+NPSP
Sbjct: 61 PFSFFGPNTPSSIFPNFPFFSPPTNPSP 87

BLAST of IVF0008848 vs. NCBI nr
Match: KAG6571864.1 (hypothetical protein SDJN03_28592, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.9 bits (224), Expect = 1.52e-21
Identity = 60/96 (62.50%), Postives = 68/96 (70.83%), Query Frame = 0

Query: 1  MARFTLLVAFLATLLLSSLSSS-SSFSSSSTIVSRKLLASDFPELPDFNVPPFYPEFRLP 60
          MAR  +L+A +ATL LSS +SS SS SSSS +VSRKLLA    E+PD  VPP  P F LP
Sbjct: 1  MARLPILIACVATLFLSSFTSSCSSCSSSSLVVSRKLLAL---EMPDMKVPPVSPGFSLP 60

Query: 61 PPLTFFGPNTPSSIFPN-------FPFFSPPSNPSP 88
          PP +FFGPNTPSS FPN       FPFF PP+NPSP
Sbjct: 61 PPFSFFGPNTPSSSFPNIPSSFPNFPFFFPPTNPSP 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K7G82.2e-3189.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G066190 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN43761.11.57e-4289.77hypothetical protein Csa_017175 [Cucumis sativus][more]
KAG6571864.11.52e-2162.50hypothetical protein SDJN03_28592, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0008848.1IVF0008848.1mRNA