IVF0008748 (gene) Melon (IVF77) v1

Overview


Name	IVF0008748
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	PMD domain-containing protein
Location	chr02: 16120178 .. 16120629 (+)
RNA-Seq Expression	IVF0008748
Synteny	IVF0008748

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCCTAATCTTGAGGATGAGGTAAAGGAGCATAAAGATGAGAGCGATAGCAGCAAAGTGATTGTCATTGGAAGAGACCTTTGAAGAAAGCGAAGGTATCAGGTGATCATCCCGACGGAAGGGGTTTAAGTGCTTTGGAAGTTCCTGATGTTCCACCACTAGTTTGCACGTTTTCCCTTCTAATTTTTTTTTGTTTTGTCCATCTTCTTCCTAAGTGACTTATTAATTGTTTACTTCTGCAGTCACCATTGAACGATCATCTTGAAGGACTTATAGAGCCAGACAGTGATGAATCTTTGACGGGACCTCACACAGTTGTTTCGACCTTTGAGGAAGTTGGTACCTCGAAAACTCCCGTCAATAAACTGGCTGAACAATCCTTACGCCCATCTGCTCTTCTCGAGGAGATTCATCGAGGCAAGATGACAGTGGGGGGGAAAAGACCTTGA

mRNA sequence

ATGATTCCTAATCTTGAGGATGAGGTAAAGGAGCATAAAGATGAGAGCGATAGCAGCAAAGTGATTTCACCATTGAACGATCATCTTGAAGGACTTATAGAGCCAGACAGTGATGAATCTTTGACGGGACCTCACACAGTTGTTTCGACCTTTGAGGAAGTTGGTACCTCGAAAACTCCCGTCAATAAACTGGCTGAACAATCCTTACGCCCATCTGCTCTTCTCGAGGAGATTCATCGAGGCAAGATGACAGTGGGGGGGAAAAGACCTTGA

Coding sequence (CDS)

ATGATTCCTAATCTTGAGGATGAGGTAAAGGAGCATAAAGATGAGAGCGATAGCAGCAAAGTGATTTCACCATTGAACGATCATCTTGAAGGACTTATAGAGCCAGACAGTGATGAATCTTTGACGGGACCTCACACAGTTGTTTCGACCTTTGAGGAAGTTGGTACCTCGAAAACTCCCGTCAATAAACTGGCTGAACAATCCTTACGCCCATCTGCTCTTCTCGAGGAGATTCATCGAGGCAAGATGACAGTGGGGGGGAAAAGACCTTGA

Protein sequence

MIPNLEDEVKEHKDESDSSKVISPLNDHLEGLIEPDSDESLTGPHTVVSTFEEVGTSKTPVNKLAEQSLRPSALLEEIHRGKMTVGGKRP

Homology

[Close]

BLAST of IVF0008748 vs. ExPASy TrEMBL
Match: A0A5A7TYW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G00180 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.3e-31
Identity = 82/113 (72.57%), Postives = 82/113 (72.57%), Query Frame = 0


Query: 1   MIPNLEDEVKEHKDESDSSK-----------------------------VISPLNDHLEG 60
           MIPNLEDEVKEHKDESDSSK                               SPLNDHLEG
Sbjct: 415 MIPNLEDEVKEHKDESDSSKSDCHWKRPLKKAKVSGDHPDGRGLSALEVPDSPLNDHLEG 474

Query: 61  LIEPDSDESLTGPHTVVSTFEEVGTSKTPVNKLAEQSLRPSALLEEIHRGKMT 85
           LIEPDSDESLTGPHTVVSTFEEVGTSKTPVNKLAEQSLRPSALLEEIHRGKMT
Sbjct: 475 LIEPDSDESLTGPHTVVSTFEEVGTSKTPVNKLAEQSLRPSALLEEIHRGKMT 527

[Close]

BLAST of IVF0008748 vs. ExPASy TrEMBL
Match: A0A5A7V4F4 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004890 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.5e-30
Identity = 81/107 (75.70%), Postives = 82/107 (76.64%), Query Frame = 0


Query: 1   MIPNLEDEVKEHKDESDSSK--------------VI-----SPLNDHLEGLIEPDSDESL 60
           M PNLE+EVKEHKDESDSSK              VI     SPLNDHLEGLIEPDSDESL
Sbjct: 522 MAPNLEEEVKEHKDESDSSKSDLHWKRPLKRRYQVIIPTEESPLNDHLEGLIEPDSDESL 581

Query: 61  TGPHTVVSTFEEVGTSKTPVNKLAEQSLRPSALLEEIHRGKMTVGGK 89
           TGPH V STFEEVGTSKTPVNK AEQSLRPSALLEEI RGKMTVG K
Sbjct: 582 TGPHAVDSTFEEVGTSKTPVNKPAEQSLRPSALLEEIRRGKMTVGRK 628

[Close]

BLAST of IVF0008748 vs. ExPASy TrEMBL
Match: A0A5D3BRA8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00620 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.5e-30
Identity = 81/107 (75.70%), Postives = 82/107 (76.64%), Query Frame = 0


Query: 1   MIPNLEDEVKEHKDESDSSK--------------VI-----SPLNDHLEGLIEPDSDESL 60
           M PNLE+EVKEHKDESDSSK              VI     SPLNDHLEGLIEPDSDESL
Sbjct: 522 MAPNLEEEVKEHKDESDSSKSDLHWKRPLKRRYQVIIPTEESPLNDHLEGLIEPDSDESL 581

Query: 61  TGPHTVVSTFEEVGTSKTPVNKLAEQSLRPSALLEEIHRGKMTVGGK 89
           TGPH V STFEEVGTSKTPVNK AEQSLRPSALLEEI RGKMTVG K
Sbjct: 582 TGPHAVDSTFEEVGTSKTPVNKPAEQSLRPSALLEEIRRGKMTVGRK 628

[Close]

BLAST of IVF0008748 vs. ExPASy TrEMBL
Match: A0A5A7TIV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002340 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.5e-30
Identity = 76/89 (85.39%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1   MIPNLEDEVKEHKDESDSSK-VISPLNDHLEGLIEPDSDESLTGPHTVVSTFEEVGTSKT 60
           M  NLE+EVKEHKDESDSSK   SPLN+HLEGLIEPDSDESLTGPH V S FEEVGTSKT
Sbjct: 398 MTSNLEEEVKEHKDESDSSKRYQSPLNNHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKT 457

Query: 61  PVNKLAEQSLRPSALLEEIHRGKMTVGGK 89
            VNKLAEQSLRPS LLEEI RGKMTVGGK
Sbjct: 458 LVNKLAEQSLRPSTLLEEIRRGKMTVGGK 486

[Close]

BLAST of IVF0008748 vs. ExPASy TrEMBL
Match: A0A5A7SHN8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1204G00400 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.6e-29
Identity = 78/121 (64.46%), Postives = 81/121 (66.94%), Query Frame = 0


Query: 1   MIPNLEDEVKEHKDESDSSK---------------------------------VISPLND 60
           M PNLE+EVKEHKDESDSSK                                 ++SPLND
Sbjct: 577 MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAEVSGDHPNERGLSALEVPDVPLVSPLND 636

Query: 61  HLEGLIEPDSDESLTGPHTVVSTFEEVGTSKTPVNKLAEQSLRPSALLEEIHRGKMTVGG 89
           HLEGLIEPDSDESLTGPH V   FEEVGTSKTPVNK AEQSLRPSALLEEI RGKMTVGG
Sbjct: 637 HLEGLIEPDSDESLTGPHAVDLAFEEVGTSKTPVNKPAEQSLRPSALLEEIRRGKMTVGG 696

[Close]

BLAST of IVF0008748 vs. NCBI nr
Match: KAA0046555.1 (hypothetical protein E6C27_scaffold114G00780 [Cucumis melo var. makuwa] >TYK28704.1 hypothetical protein E5676_scaffold403G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 146 bits (369), Expect = 1.43e-38
Identity = 82/113 (72.57%), Postives = 82/113 (72.57%), Query Frame = 0


Query: 1   MIPNLEDEVKEHKDESDSSKVI-----------------------------SPLNDHLEG 60
           MIPNLEDEVKEHKDESDSSK                               SPLNDHLEG
Sbjct: 415 MIPNLEDEVKEHKDESDSSKSDCHWKRPLKKAKVSGDHPDGRGLSALEVPDSPLNDHLEG 474

Query: 61  LIEPDSDESLTGPHTVVSTFEEVGTSKTPVNKLAEQSLRPSALLEEIHRGKMT 84
           LIEPDSDESLTGPHTVVSTFEEVGTSKTPVNKLAEQSLRPSALLEEIHRGKMT
Sbjct: 475 LIEPDSDESLTGPHTVVSTFEEVGTSKTPVNKLAEQSLRPSALLEEIHRGKMT 527

[Close]

BLAST of IVF0008748 vs. NCBI nr
Match: KAA0043323.1 (hypothetical protein E6C27_scaffold110G002340 [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (358), Expect = 2.33e-37
Identity = 76/89 (85.39%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1   MIPNLEDEVKEHKDESDSSKVI-SPLNDHLEGLIEPDSDESLTGPHTVVSTFEEVGTSKT 60
           M  NLE+EVKEHKDESDSSK   SPLN+HLEGLIEPDSDESLTGPH V S FEEVGTSKT
Sbjct: 398 MTSNLEEEVKEHKDESDSSKRYQSPLNNHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKT 457

Query: 61  PVNKLAEQSLRPSALLEEIHRGKMTVGGK 88
            VNKLAEQSLRPS LLEEI RGKMTVGGK
Sbjct: 458 LVNKLAEQSLRPSTLLEEIRRGKMTVGGK 486

[Close]

BLAST of IVF0008748 vs. NCBI nr
Match: TYK02261.1 (hypothetical protein E5676_scaffold18G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (358), Expect = 5.55e-37
Identity = 81/107 (75.70%), Postives = 82/107 (76.64%), Query Frame = 0


Query: 1   MIPNLEDEVKEHKDESDSSK--------------VI-----SPLNDHLEGLIEPDSDESL 60
           M PNLE+EVKEHKDESDSSK              VI     SPLNDHLEGLIEPDSDESL
Sbjct: 522 MAPNLEEEVKEHKDESDSSKSDLHWKRPLKRRYQVIIPTEESPLNDHLEGLIEPDSDESL 581

Query: 61  TGPHTVVSTFEEVGTSKTPVNKLAEQSLRPSALLEEIHRGKMTVGGK 88
           TGPH V STFEEVGTSKTPVNK AEQSLRPSALLEEI RGKMTVG K
Sbjct: 582 TGPHAVDSTFEEVGTSKTPVNKPAEQSLRPSALLEEIRRGKMTVGRK 628

[Close]

BLAST of IVF0008748 vs. NCBI nr
Match: KAA0060611.1 (hypothetical protein E6C27_scaffold22G004890 [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (358), Expect = 5.55e-37
Identity = 81/107 (75.70%), Postives = 82/107 (76.64%), Query Frame = 0


Query: 1   MIPNLEDEVKEHKDESDSSK--------------VI-----SPLNDHLEGLIEPDSDESL 60
           M PNLE+EVKEHKDESDSSK              VI     SPLNDHLEGLIEPDSDESL
Sbjct: 522 MAPNLEEEVKEHKDESDSSKSDLHWKRPLKRRYQVIIPTEESPLNDHLEGLIEPDSDESL 581

Query: 61  TGPHTVVSTFEEVGTSKTPVNKLAEQSLRPSALLEEIHRGKMTVGGK 88
           TGPH V STFEEVGTSKTPVNK AEQSLRPSALLEEI RGKMTVG K
Sbjct: 582 TGPHAVDSTFEEVGTSKTPVNKPAEQSLRPSALLEEIRRGKMTVGRK 628

[Close]

BLAST of IVF0008748 vs. NCBI nr
Match: KAA0025356.1 (hypothetical protein E6C27_scaffold1204G00400 [Cucumis melo var. makuwa])

HSP 1 Score: 138 bits (348), Expect = 1.26e-35
Identity = 78/121 (64.46%), Postives = 81/121 (66.94%), Query Frame = 0


Query: 1   MIPNLEDEVKEHKDESDSSK---------------------------------VISPLND 60
           M PNLE+EVKEHKDESDSSK                                 ++SPLND
Sbjct: 577 MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAEVSGDHPNERGLSALEVPDVPLVSPLND 636

Query: 61  HLEGLIEPDSDESLTGPHTVVSTFEEVGTSKTPVNKLAEQSLRPSALLEEIHRGKMTVGG 88
           HLEGLIEPDSDESLTGPH V   FEEVGTSKTPVNK AEQSLRPSALLEEI RGKMTVGG
Sbjct: 637 HLEGLIEPDSDESLTGPHAVDLAFEEVGTSKTPVNKPAEQSLRPSALLEEIRRGKMTVGG 696

The following BLAST results are available for this feature:

BLAST of IVF0008748 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0008748 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TYW3	1.3e-31	72.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V4F4	2.5e-30	75.70	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3BRA8	2.5e-30	75.70	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7TIV2	2.5e-30	85.39	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SHN8	3.6e-29	64.46	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of IVF0008748 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046555.1	1.43e-38	72.57	hypothetical protein E6C27_scaffold114G00780 [Cucumis melo var. makuwa] >TYK2870...	[more]
KAA0043323.1	2.33e-37	85.39	hypothetical protein E6C27_scaffold110G002340 [Cucumis melo var. makuwa]	[more]
TYK02261.1	5.55e-37	75.70	hypothetical protein E5676_scaffold18G00620 [Cucumis melo var. makuwa]	[more]
KAA0060611.1	5.55e-37	75.70	hypothetical protein E6C27_scaffold22G004890 [Cucumis melo var. makuwa]	[more]
KAA0025356.1	1.26e-35	64.46	hypothetical protein E6C27_scaffold1204G00400 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0008748 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0008748.1	IVF0008748.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane