IVF0008720 (gene) Melon (IVF77) v1

Overview


Name	IVF0008720
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Glial fibrillary acidic protein-like
Location	chr04: 9890714 .. 9891092 (-)
RNA-Seq Expression	IVF0008720
Synteny	IVF0008720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTTCATTTGGATTTCTAGTCATCTAAGGTATCCTAATAATTTTGGATATCCTCAGATAAAATTTAGCAGTCTGTGGAATAATACCAGAAACACTATCAGAGAATTCAATAGTGCATACCTAAGACCCAAAGGATCTAGAATTTGGAGATTGGATGCAATTTTTCAGCCATTTAACAATAGTAGAAGCAATTTGGAGAGCTCCTTGGATGACCACAAGTCCTTTGACATACCATTGTGGAAAATTGGCTTTTTATCCTGCTATTAGGTTTATGGAGGGGCATTGCTTATTCTCCTCTTTTGGTACTACGTCAATTATGGTCAAAACAATTTGCGCCAGTTATATGTGGGCTAGAAGATTAGGAATTCTCGTATGA

mRNA sequence

ATGCTCTTCATTTGGATTTCTAGTCATCTAAGGTATCCTAATAATTTTGGATATCCTCAGATAAAATTTAGCAGTCTGTGGAATAATACCAGAAACACTATCAGAGAATTCAATAATTGGATGCAATTTTTCAGCCATTTAACAATAGTAGAAGCAATTTGGAGAGCTCCTTGGATGACCACAAGTCCTTTGACATACCATTGTGGAAAATTGGCTTTTTATCCTGCTATTAGGTTTATGGAGGGGCATTGCTTATTCTCCTCTTTTGGTACTACGTCAATTATGGTCAAAACAATTTGCGCCAGTTATATGTGGGCTAGAAGATTAGGAATTCTCGTATGA

Coding sequence (CDS)

ATGCTCTTCATTTGGATTTCTAGTCATCTAAGGTATCCTAATAATTTTGGATATCCTCAGATAAAATTTAGCAGTCTGTGGAATAATACCAGAAACACTATCAGAGAATTCAATAATTGGATGCAATTTTTCAGCCATTTAACAATAGTAGAAGCAATTTGGAGAGCTCCTTGGATGACCACAAGTCCTTTGACATACCATTGTGGAAAATTGGCTTTTTATCCTGCTATTAGGTTTATGGAGGGGCATTGCTTATTCTCCTCTTTTGGTACTACGTCAATTATGGTCAAAACAATTTGCGCCAGTTATATGTGGGCTAGAAGATTAGGAATTCTCGTATGA

Protein sequence

MLFIWISSHLRYPNNFGYPQIKFSSLWNNTRNTIREFNNWMQFFSHLTIVEAIWRAPWMTTSPLTYHCGKLAFYPAIRFMEGHCLFSSFGTTSIMVKTICASYMWARRLGILV

Homology

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BLAST of IVF0008720 vs. ExPASy TrEMBL
Match: A0A5A7VHI3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00080 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.8e-46
Identity = 94/125 (75.20%), Postives = 98/125 (78.40%), Query Frame = 0


Query: 1   MLFIWISSHLRYPNNFGYPQIKFSSLWNNTRNTIREFNN------------WMQFFSHLT 60
           MLFIWISSHLRYPNNFGYPQIKFSS WN TRNTIREFN+            WMQFFSHLT
Sbjct: 262 MLFIWISSHLRYPNNFGYPQIKFSSPWNKTRNTIREFNSAHWDPKDPEFGVWMQFFSHLT 321

Query: 61  IVEAIWRAPWMTTSPLTYHCGKLAFYPAIRFMEGHCLFSSFGTTSIMVKTICASYMWARR 114
            +EAIWRAPWM TSPLTY CGKLAF   +    GHCLFSSFG TSIMVKTICAS MW RR
Sbjct: 322 TIEAIWRAPWMPTSPLTYRCGKLAFISLLGLWGGHCLFSSFGITSIMVKTICASCMWVRR 381

[Close]

BLAST of IVF0008720 vs. ExPASy TrEMBL
Match: A0A5D3D0S2 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001090 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.8e-28
Identity = 65/99 (65.66%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 1   MLFIWISSHLRYPNNFGYPQIKFSSLWNNTRNTIREFNN------------WMQFFSHLT 60
           MLFIWISSHLRYPNNFGY QIKFSS WNNTRNTIREFN+            WMQFFSHLT
Sbjct: 148 MLFIWISSHLRYPNNFGYLQIKFSSPWNNTRNTIREFNSAHWDPKDTEFGVWMQFFSHLT 207

Query: 61  IVEAIWRAPWMTTSPLTYHCGKLAFYPAIRFMEGHCLFS 88
            ++AIWRAPWM TSPLT+ CGKLA    +    G   +S
Sbjct: 208 TIDAIWRAPWMLTSPLTHRCGKLAIILLLGLWGGGIAYS 246

[Close]

BLAST of IVF0008720 vs. ExPASy TrEMBL
Match: A0A0A0LZC9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G328380 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 6.3e-23
Identity = 54/108 (50.00%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 1   MLFIWISSHLRYPNNFGYPQIKFSSLWNNTRNTIREFN------------NWMQFFSHLT 60
           MLFIWISSHL+YP+ FG P+I+FSS WN TRNT+++FN            +WM+FF H+T
Sbjct: 1   MLFIWISSHLKYPSEFGCPRIEFSSPWNTTRNTVKDFNVVRWNPKTLDLSSWMRFFGHVT 60

Query: 61  IVEAIWRAPWMTTSPLTYHCGKLAFYPAIRFMEGHCLFSSFGTTSIMV 97
           + E +WRAPW+ TSPL      +A Y   R M   CLFS  G  + MV
Sbjct: 61  MEEIVWRAPWVPTSPLNISLRTIAIYSTFRLMGKDCLFSFIGIATYMV 108

[Close]

BLAST of IVF0008720 vs. ExPASy TrEMBL
Match: A0A5A7SUT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00100 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 5.0e-12
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1   MLFIWISSHLRYPNNFGYPQIKFSSLWNNTRNTIREFNN 40
           MLFIWISSHLRYPNNFGYPQIKF+S WN TRNTIREFN+
Sbjct: 262 MLFIWISSHLRYPNNFGYPQIKFNSPWNKTRNTIREFNS 300

[Close]

BLAST of IVF0008720 vs. ExPASy TrEMBL
Match: A0A6J1DB13 (uncharacterized protein LOC111018820 OS=Momordica charantia OX=3673 GN=LOC111018820 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 8.0e-10
Identity = 35/89 (39.33%), Postives = 46/89 (51.69%), Query Frame = 0


Query: 1   MLFIWISSHLRYPNNFGYPQIKFSSLWNNTRNTIREFN------------NWMQFFSHLT 60
           +L+IWI SH+  P  F  PQ+KFS  W+  +N I EFN             W  FF+ L 
Sbjct: 147 LLYIWILSHINCPPEFKCPQVKFSRSWSRLQNPILEFNQADWSQIHPGKEEWSIFFAGLR 206

Query: 61  IVEAIWRAPWMTTSPLTYHCGKLAFYPAI 78
             +  WRA WM+T P+ Y CGK    P +
Sbjct: 207 SEDVEWRARWMSTKPMMYRCGKFHSLPLL 235

[Close]

BLAST of IVF0008720 vs. NCBI nr
Match: KAA0065295.1 (uncharacterized protein E6C27_scaffold1023G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 193 bits (490), Expect = 6.98e-58
Identity = 94/125 (75.20%), Postives = 98/125 (78.40%), Query Frame = 0


Query: 1   MLFIWISSHLRYPNNFGYPQIKFSSLWNNTRNTIREFNN------------WMQFFSHLT 60
           MLFIWISSHLRYPNNFGYPQIKFSS WN TRNTIREFN+            WMQFFSHLT
Sbjct: 262 MLFIWISSHLRYPNNFGYPQIKFSSPWNKTRNTIREFNSAHWDPKDPEFGVWMQFFSHLT 321

Query: 61  IVEAIWRAPWMTTSPLTYHCGKLAFYPAIRFMEGHCLFSSFGTTSIMVKTICASYMWARR 113
            +EAIWRAPWM TSPLTY CGKLAF   +    GHCLFSSFG TSIMVKTICAS MW RR
Sbjct: 322 TIEAIWRAPWMPTSPLTYRCGKLAFISLLGLWGGHCLFSSFGITSIMVKTICASCMWVRR 381

[Close]

BLAST of IVF0008720 vs. NCBI nr
Match: TYK16834.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 132 bits (332), Expect = 3.32e-33
Identity = 63/84 (75.00%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 1   MLFIWISSHLRYPNNFGYPQIKFSSLWNNTRNTIREFNN------------WMQFFSHLT 60
           MLFIWISSHLRYPNNFGY QIKFSS WNNTRNTIREFN+            WMQFFSHLT
Sbjct: 148 MLFIWISSHLRYPNNFGYLQIKFSSPWNNTRNTIREFNSAHWDPKDTEFGVWMQFFSHLT 207

Query: 61  IVEAIWRAPWMTTSPLTYHCGKLA 72
            ++AIWRAPWM TSPLT+ CGKLA
Sbjct: 208 TIDAIWRAPWMLTSPLTHRCGKLA 231

[Close]

BLAST of IVF0008720 vs. NCBI nr
Match: KGN65326.1 (hypothetical protein Csa_019937 [Cucumis sativus])

HSP 1 Score: 114 bits (285), Expect = 2.98e-30
Identity = 54/108 (50.00%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 1   MLFIWISSHLRYPNNFGYPQIKFSSLWNNTRNTIREFN------------NWMQFFSHLT 60
           MLFIWISSHL+YP+ FG P+I+FSS WN TRNT+++FN            +WM+FF H+T
Sbjct: 1   MLFIWISSHLKYPSEFGCPRIEFSSPWNTTRNTVKDFNVVRWNPKTLDLSSWMRFFGHVT 60

Query: 61  IVEAIWRAPWMTTSPLTYHCGKLAFYPAIRFMEGHCLFSSFGTTSIMV 96
           + E +WRAPW+ TSPL      +A Y   R M   CLFS  G  + MV
Sbjct: 61  MEEIVWRAPWVPTSPLNISLRTIAIYSTFRLMGKDCLFSFIGIATYMV 108

[Close]

BLAST of IVF0008720 vs. NCBI nr
Match: KAA0033221.1 (uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 1.99e-14
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1   MLFIWISSHLRYPNNFGYPQIKFSSLWNNTRNTIREFNN 39
           MLFIWISSHLRYPNNFGYPQIKF+S WN TRNTIREFN+
Sbjct: 262 MLFIWISSHLRYPNNFGYPQIKFNSPWNKTRNTIREFNS 300

[Close]

BLAST of IVF0008720 vs. NCBI nr
Match: XP_031739496.1 (uncharacterized protein LOC116403043 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 4.73e-12
Identity = 34/89 (38.20%), Postives = 48/89 (53.93%), Query Frame = 0


Query: 1   MLFIWISSHLRYPNNFGYPQIKFSSLWNNTRNTIREFN------------NWMQFFSHLT 60
           +L+IWI SH+++P  F  P+++FSS WN  RNTI EF              W+ FFS L+
Sbjct: 78  LLYIWIHSHIKFPAEFRCPKLEFSSPWNLMRNTISEFGMAVWNPTYPKKETWVSFFSTLS 137

Query: 61  IVEAIWRAPWMTTSPLTYHCGKLAFYPAI 77
             + IW+A WM    + Y CG     P +
Sbjct: 138 SEDVIWKAQWMPLKAVIYRCGDFHSVPLL 166

The following BLAST results are available for this feature:

BLAST of IVF0008720 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0008720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VHI3	1.8e-46	75.20	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D0S2	3.8e-28	65.66	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0LZC9	6.3e-23	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G328380 PE=4 SV=1	[more]
A0A5A7SUT0	5.0e-12	89.74	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84...	[more]
A0A6J1DB13	8.0e-10	39.33	uncharacterized protein LOC111018820 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

BLAST of IVF0008720 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065295.1	6.98e-58	75.20	uncharacterized protein E6C27_scaffold1023G00080 [Cucumis melo var. makuwa]	[more]
TYK16834.1	3.32e-33	75.00	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
KGN65326.1	2.98e-30	50.00	hypothetical protein Csa_019937 [Cucumis sativus]	[more]
KAA0033221.1	1.99e-14	89.74	uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa]	[more]
XP_031739496.1	4.73e-12	38.20	uncharacterized protein LOC116403043 [Cucumis sativus]	[more]

BLAST of IVF0008720 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0008720.1	IVF0008720.1	mRNA