IVF0008567 (gene) Melon (IVF77) v1

Overview
NameIVF0008567
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGlial fibrillary acidic protein-like
Locationchr05: 6941190 .. 6941516 (+)
RNA-Seq ExpressionIVF0008567
SyntenyIVF0008567
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTGTGTTATGGCAACAGAGAACGAAAAGTTAAGAGAAGAAGTCAAGAAATGGGTCCAGCAAGCTGTTAATACTCAAAGAGATTTAGACGAGGCAAAACGAAAGCTATTGGAGTTGGAGAAGGAAAACGATTCTTTAAATACTGAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAATATTGCCAACTTACATGAAGAGATAGAAGCTAAAAAGGTATGCATTACAGATTTGAAACATGAAATAGAAAGATTGAATGGGGTTGCCTTAGAATTCCAAAATGCATTACATGAACAAGCCACGTCATCTCAATAG

mRNA sequence

ATGAATTGTGTTATGGCAACAGAGAACGAAAAGTTAAGAGAAGAAGTCAAGAAATGGGTCCAGCAAGCTGTTAATACTCAAAGAGATTTAGACGAGGCAAAACGAAAGCTATTGGAGTTGGAGAAGGAAAACGATTCTTTAAATACTGAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAATATTGCCAACTTACATGAAGAGATAGAAGCTAAAAAGGTATGCATTACAGATTTGAAACATGAAATAGAAAGATTGAATGGGGTTGCCTTAGAATTCCAAAATGCATTACATGAACAAGCCACGTCATCTCAATAG

Coding sequence (CDS)

ATGAATTGTGTTATGGCAACAGAGAACGAAAAGTTAAGAGAAGAAGTCAAGAAATGGGTCCAGCAAGCTGTTAATACTCAAAGAGATTTAGACGAGGCAAAACGAAAGCTATTGGAGTTGGAGAAGGAAAACGATTCTTTAAATACTGAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAATATTGCCAACTTACATGAAGAGATAGAAGCTAAAAAGGTATGCATTACAGATTTGAAACATGAAATAGAAAGATTGAATGGGGTTGCCTTAGAATTCCAAAATGCATTACATGAACAAGCCACGTCATCTCAATAG

Protein sequence

MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAKKVCITDLKHEIERLNGVALEFQNALHEQATSSQ
Homology
[Close]
BLAST of IVF0008567 vs. ExPASy TrEMBL
Match: A0A5A7VDD9 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00070 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 7.8e-47
Identity = 102/108 (94.44%), Postives = 106/108 (98.15%), Query Frame = 0 

Query: 1   MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKR 60
           MNCV+ATENEKLREEVKKWVQQAVNTQRDLDEAKRK LELEKENDSLNTEAIQ+RKKNKR
Sbjct: 1   MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQMRKKNKR 60

Query: 61  LLRNIANLHEEIEAKKVCITDLKHEIERLNGVALEFQNALHEQATSSQ 109
           LLRNIANLHEEIEAKKVCITDLKHEIE+LNG+ALEFQNALHEQA SSQ
Sbjct: 61  LLRNIANLHEEIEAKKVCITDLKHEIEKLNGIALEFQNALHEQAISSQ 108

[Close]
BLAST of IVF0008567 vs. ExPASy TrEMBL
Match: A0A5A7SGB8 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G00210 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.1e-46
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 0 

Query: 1   MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKR 60
           MNCV+ATENEKLREEVKKWVQQAVNTQ  LDEAKRK LELEKENDSLNTEAIQVRKKNKR
Sbjct: 1   MNCVLATENEKLREEVKKWVQQAVNTQSYLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 61  LLRNIANLHEEIEAKKVCITDLKHEIERLNGVALEFQNALHEQATSSQ 109
           LLRNI NLHEEIEAKKVCITDLKHE+ERLNGVALEFQNALHEQATSSQ
Sbjct: 61  LLRNITNLHEEIEAKKVCITDLKHEVERLNGVALEFQNALHEQATSSQ 108

[Close]
BLAST of IVF0008567 vs. ExPASy TrEMBL
Match: A0A5D3C8B8 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G002190 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.1e-46
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 0 

Query: 1   MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKR 60
           MNCV+ATENEKLREEVKKWVQQAVNTQ  LDEAKRK LELEKENDSLNTEAIQVRKKNKR
Sbjct: 1   MNCVLATENEKLREEVKKWVQQAVNTQSYLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 61  LLRNIANLHEEIEAKKVCITDLKHEIERLNGVALEFQNALHEQATSSQ 109
           LLRNI NLHEEIEAKKVCITDLKHE+ERLNGVALEFQNALHEQATSSQ
Sbjct: 61  LLRNITNLHEEIEAKKVCITDLKHEVERLNGVALEFQNALHEQATSSQ 108

[Close]
BLAST of IVF0008567 vs. ExPASy TrEMBL
Match: A0A5A7SM49 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold23528G00010 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.5e-45
Identity = 100/108 (92.59%), Postives = 104/108 (96.30%), Query Frame = 0 

Query: 1   MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKR 60
           MNCV+ATENEKLREEVKKWVQQAVN QRDLDEAKRK LELEKENDSLNTEAIQVRKKNKR
Sbjct: 1   MNCVLATENEKLREEVKKWVQQAVNIQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 61  LLRNIANLHEEIEAKKVCITDLKHEIERLNGVALEFQNALHEQATSSQ 109
           LLRNIANLHEEIEA+KVCITDLKHEIE+LNG+ LEFQNALHEQA SSQ
Sbjct: 61  LLRNIANLHEEIEAEKVCITDLKHEIEKLNGITLEFQNALHEQAISSQ 108

[Close]
BLAST of IVF0008567 vs. ExPASy TrEMBL
Match: A0A5D3CE19 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00510 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.2e-42
Identity = 99/108 (91.67%), Postives = 103/108 (95.37%), Query Frame = 0 

Query: 1   MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKR 60
           MNCV+ATENEKL EEVKKWVQQAVNT RDLDEAK+K LELEKENDSLNTEAIQVRKKNKR
Sbjct: 1   MNCVLATENEKLGEEVKKWVQQAVNTPRDLDEAKQKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 61  LLRNIANLHEEIEAKKVCITDLKHEIERLNGVALEFQNALHEQATSSQ 109
           LLRNIA+LH E+EAKKVCIT LKHEIERLNGVALEFQNALHEQATSSQ
Sbjct: 61  LLRNIADLH-EVEAKKVCITYLKHEIERLNGVALEFQNALHEQATSSQ 107

[Close]
BLAST of IVF0008567 vs. NCBI nr
Match: KAA0065294.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 192 bits (487), Expect = 4.19e-59
Identity = 102/108 (94.44%), Postives = 106/108 (98.15%), Query Frame = 0 

Query: 1   MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKR 60
           MNCV+ATENEKLREEVKKWVQQAVNTQRDLDEAKRK LELEKENDSLNTEAIQ+RKKNKR
Sbjct: 1   MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQMRKKNKR 60

Query: 61  LLRNIANLHEEIEAKKVCITDLKHEIERLNGVALEFQNALHEQATSSQ 108
           LLRNIANLHEEIEAKKVCITDLKHEIE+LNG+ALEFQNALHEQA SSQ
Sbjct: 61  LLRNIANLHEEIEAKKVCITDLKHEIEKLNGIALEFQNALHEQAISSQ 108

[Close]
BLAST of IVF0008567 vs. NCBI nr
Match: KAA0025321.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 187 bits (476), Expect = 1.95e-57
Identity = 100/108 (92.59%), Postives = 104/108 (96.30%), Query Frame = 0 

Query: 1   MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKR 60
           MNCV+ATENEKLREEVKKWVQQAVN QRDLDEAKRK LELEKENDSLNTEAIQVRKKNKR
Sbjct: 1   MNCVLATENEKLREEVKKWVQQAVNIQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 61  LLRNIANLHEEIEAKKVCITDLKHEIERLNGVALEFQNALHEQATSSQ 108
           LLRNIANLHEEIEA+KVCITDLKHEIE+LNG+ LEFQNALHEQA SSQ
Sbjct: 61  LLRNIANLHEEIEAEKVCITDLKHEIEKLNGITLEFQNALHEQAISSQ 108

[Close]
BLAST of IVF0008567 vs. NCBI nr
Match: TYK07484.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 189 bits (480), Expect = 5.50e-57
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 0 

Query: 1   MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKR 60
           MNCV+ATENEKLREEVKKWVQQAVNTQ  LDEAKRK LELEKENDSLNTEAIQVRKKNKR
Sbjct: 1   MNCVLATENEKLREEVKKWVQQAVNTQSYLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 61  LLRNIANLHEEIEAKKVCITDLKHEIERLNGVALEFQNALHEQATSSQ 108
           LLRNI NLHEEIEAKKVCITDLKHE+ERLNGVALEFQNALHEQATSSQ
Sbjct: 61  LLRNITNLHEEIEAKKVCITDLKHEVERLNGVALEFQNALHEQATSSQ 108

[Close]
BLAST of IVF0008567 vs. NCBI nr
Match: TYK09458.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 178 bits (451), Expect = 1.99e-55
Identity = 99/108 (91.67%), Postives = 103/108 (95.37%), Query Frame = 0 

Query: 1   MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKR 60
           MNCV+ATENEKL EEVKKWVQQAVNT RDLDEAK+K LELEKENDSLNTEAIQVRKKNKR
Sbjct: 1   MNCVLATENEKLGEEVKKWVQQAVNTPRDLDEAKQKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 61  LLRNIANLHEEIEAKKVCITDLKHEIERLNGVALEFQNALHEQATSSQ 108
           LLRNIA+LHE +EAKKVCIT LKHEIERLNGVALEFQNALHEQATSSQ
Sbjct: 61  LLRNIADLHE-VEAKKVCITYLKHEIERLNGVALEFQNALHEQATSSQ 107

[Close]
BLAST of IVF0008567 vs. NCBI nr
Match: KAA0025178.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 189 bits (480), Expect = 3.89e-55
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 0 

Query: 1   MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKR 60
           MNCV+ATENEKLREEVKKWVQQAVNTQ  LDEAKRK LELEKENDSLNTEAIQVRKKNKR
Sbjct: 1   MNCVLATENEKLREEVKKWVQQAVNTQSYLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 61  LLRNIANLHEEIEAKKVCITDLKHEIERLNGVALEFQNALHEQATSSQ 108
           LLRNI NLHEEIEAKKVCITDLKHE+ERLNGVALEFQNALHEQATSSQ
Sbjct: 61  LLRNITNLHEEIEAKKVCITDLKHEVERLNGVALEFQNALHEQATSSQ 108

The following BLAST results are available for this feature:
BLAST of IVF0008567 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0008567 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VDD97.8e-4794.44Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7SGB85.1e-4694.44Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3C8B85.1e-4694.44Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7SM491.5e-4592.59Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3CE191.2e-4291.67Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
BLAST of IVF0008567 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065294.14.19e-5994.44glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0025321.11.95e-5792.59glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
TYK07484.15.50e-5794.44glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
TYK09458.11.99e-5591.67glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0025178.13.89e-5594.44glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
BLAST of IVF0008567 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 9..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0008567.1IVF0008567.1mRNA