IVF0008511 (gene) Melon (IVF77) v1

Overview
NameIVF0008511
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTranscription initiation factor TFIID subunit 10
Locationchr03: 22781850 .. 22785349 (-)
RNA-Seq ExpressionIVF0008511
SyntenyIVF0008511
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTACCCTTCAAACGAGCTTGATTTCGAAGAGAGGGAAAAATCTAACGAAGGAGAAGACGAGGAAGAAGAAGAAGAAGAAGAAAAGAAAAGAGAACCATAGCCAACAAGCGACAGGGAGCAGGCACGACGATGACGCAGCGCTATCTGAGTTTTTAGCTTCTCTAATGGAGTATACTCCCACTGTAAGATCTCTTTTCCATGCTTCTTAACCCCAATGCGCTTCTCTCCCTCCACCCATTTATCTGCAAGTTCAAGTCATGTCGCTGTTGATTTTTTTGGGGGCTATCGTTTTACAGATTCCCGATGAGTTGGTGGAGCATTACTTAGGAAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGTAGGTACCTTTTGTTTGTTTGTTTTTTTTCTTTTTGTGTATTTTTGTTCATCAAAACCCTAGGTCTAAAACGCGGGTTTTCTACCGATAGATGAGATGGGTATAATCTTTCTCTTAATGTTTTGAGTGGTTCTGCTTTCTTTTCGCAATTTGATCGTACTTGGAGAATTTTTCATTCAATTGGTTGGTTCTTGACTGTTGATATCGATCAAAGTGAAGCTTAACTAAATTTCTTATTTTGTATTTTTTTCTTCTAAAGAGACAATGTTCGTCGTAGTTGCTGATTTTTTTTGTTGGAAATTGCTTAATCTCTATGAACCGAGGATGAGATTGAAGGAGCATGCTTTTTTTTTTTTTAAATCAAAATTTTAAATTTATTTATTTTTAATAAATAAATAAATCACAGTTTTTCTCCAACGATTCTCTACTCTTTTCTACCATTTCATTTGCTACTTTTTCCACCCGAATTTCAAAAATGGAGAGGATATTAGTCATTTGATATGATTATCGTGGTTAAGGCAAAGTGATACTTAGTTTTTATTAGCTTTAAATGCTTTCACGATGATATGTGATGTTTGTAGTTAGATATTGGATTTCTGTTTGTTGTGAAGATCAGTTTACATTGTTCTTATAGAGCTTCATTTTGTAGGATCAGGCTTGTCGCTGTTGCCACACAGAAGTTCGTTGCTGATGTTGCAAGTGATGCTCTCCAGTATGCTTTCTTTCTTCCCCCCCATTTTTCCTAAGAAGTGCAAGTAGGATACGGTCATTACTTGGTTGGAGACCTGATAAAAAAGAGCTTGAGTTGCAGACTCTTATTTTTAATTTCATAATTTGACTGAGTTTGAGGACAAATTTTCTGAAAACAATCCTATGCTTACAGAAGATTCCTTTTGATTGTCTTACGAGCACGACTTATAATCAACCATTTAGCTCTTTTCTCTTAAAGAAAAAAGAAGGCCCTAATGCACAGCGGTTATTGCATGACATGGTAACTGTCTCTCACTTTAAAAGATGAGACCCTTATTCCTCCTGAGATTTCCTTCCAAAAAAGTCGTTTACAATCCTTTTCTACTTGGACCACAAGGACTAAGATATTCTTAACAAGGATAGAAAATAGATAGGGATCCCACGCCACTAAAGGCTAGGTTTCGAGAGTTTACTGCCCTTAAAAGTCTTCTGCCTGAGCATGACATTAAGATTTGCCTGGTTGTGAGCAGTAGTAAAATGGCTTGATCCAAAGTGTGCGACTCAACTCTAAGTACTTCTATTTCGACGGTCATCCCAAATTGTCTCATTGAAAGTTGCAATAGTGGTTTCCTTGGTCACATTATTCTTCATCAACGAATTGGGGTTAATCTCCTTGTCTTTTAAAGGTTAGTCAATAATCAATTTCCTTTATTGGAACCTCTTTCAGATCTGTCTTTGAAGATCTTGGAAAATGCTGATCTCCCACCCTTTGAGAACAAGACTTTCACCAACCCTAAAAGATTGGTGCTTCTAAATTTTCCATGGAAAGTATGAACCTCACAGCTGAATGTACAATTTCACTTGTCAAGATTATCAGGATTTCTAGAAGAGACTTACTGGACAGTTCTCACTGTAAATTCAATGATTAGCACACTATAACAAACAGCTATTAGAGGAACAAATCACTCTTAGTAATCCTCTACAGCTGCTCTCATGCACCTACTAAGCTTTCTTTTGTTACTGATTTGATCGGTTTTATTGAATTCACTCTCACACAACCTATTAAGGAAATTTTTGAAGAAAATATATTCTTATTCTTATTTATTCATGTTAAAATTAATATTTTTCTTGATTGCTTTCTTTAGTTGGCCTCATATTTTATGGCCTCCGTTTTTGTTTGTTCCTTTTTTTTGTTTGCCATTTTTCTCCATGAAATTTCAACGTCTCATTAAGGAAACTTATTTTCTTGTGCAATGTAGGCATTGTAAGGCAAGGCAGGCAGCAGTAGTGAAGGACAAAAGGGATAAACAACAAAAGGTGCATTTTTTGTAACTCAGAGTCTCTTGATTGATAAATTATTTGGCCAATCTAACATTATACTGGTTCAGGATAAGCGGTTAATATTGACCATGGAGGATCTCTCAAAGGCACTTCGTGAGGTAAGCTCGAAATGTTATTTACTTATCATAATCTCTTGTGCTTGCTATGGTTGATTCATATGCAGATATAGAGATCATTAGTTTCATTTTGTTATGTACTCTCGTTTTTTGGGTGGTGCTAGGGGGGGTTGATTATGGGTGGTTTGTGTGAAATTATCGATGTCACTTAGGCTTTAAAGTTGATGCTGGCCGGGGGCGGGGAGTTCTTATAAGAGTGGTAATTTGTCATAAAGTATGTCTGCCTTGTTTGTGTAATAAATTCGTGTCAGGCTGTAATCTTTTATAGAATTTGTGATTTGTTTTTTTTTTTCTAATTGTACGATGCACATCCTCCACACTATAATATAGTTTTCGCTCGGCAGGGAATCGTTAATGTGCATGCTTTCTCATTTTATGACCACCACTTTGAAAATGATTACGTTTTGAGCATAGACACTTGGTGATCTAGTGGCTTATCCATAACTAACCGCCTCGTTGGTACTTGATGAACAGTATGGCGTCAATGTGAAACATCAAGAATATTTTGCTGATAGCCCTTCAACGGGAGTGGATTCTACTTCCAGAGAGGAATGAGTTGGAATAACGGTTAAAATGTCTCATCGTTATTTATGTCGTGAATATACTGAATTACTGATGGATAGCGTTCAGGGTTGGAGTATTTCTGACTGACTCTGCAGCTAAATTTAGTCCCTGCCATGCGCAGTCATCATGAGTCATGTTGTACATTATAGCATTGCTTTGAACATCAAAATTAAGTAGCTGTGTTTCCCTAGTCATATTCTATTACTACTTTCCATAGCAAGGCCTTAACCTTTTCGATCTGTCAAAGCGGTAGATATGTTCGGCATTTTCTACTTGTCTATTGAATGAGACTGTGCATAATGAAAATCATAACATCATTCTTGTTCATACAAGGTCGTGTATGGATGGTTGATCCACATCTGCCAGTGACCAGAATGCATTTTCTGTAGATTTTGACTTCAATTATTTTTATTTGTTCCTGACTACG

mRNA sequence

ATTACCCTTCAAACGAGCTTGATTTCGAAGAGAGGGAAAAATCTAACGAAGGAGAAGACGAGGAAGAAGAAGAAGAAGAAGAAAAGAAAAGAGAACCATAGCCAACAAGCGACAGGGAGCAGGCACGACGATGACGCAGCGCTATCTGAGTTTTTAGCTTCTCTAATGGAGTATACTCCCACTGTAAGATCTCTTTTCCATGCTTCTTAACCCCAATGCGCTTCTCTCCCTCCACCCATTTATCTGCAAGTTCAAGTCATGTCGCTGTTGATTTTTTTGGGGGCTATCGTTTTACAGATTCCCGATGAGTTGGTGGAGCATTACTTAGGAAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGATCAGGCTTGTCGCTGTTGCCACACAGAAGTTCGTTGCTGATGTTGCAAGTGATGCTCTCCAGCATTGTAAGGCAAGGCAGGCAGCAGTAGTGAAGGACAAAAGGGATAAACAACAAAAGGATAAGCGGTTAATATTGACCATGGAGGATCTCTCAAAGGCACTTCGTGAGTATGGCGTCAATGTGAAACATCAAGAATATTTTGCTGATAGCCCTTCAACGGGAGTGGATTCTACTTCCAGAGAGGAATGAGTTGGAATAACGGTTAAAATGTCTCATCGTTATTTATGTCGTGAATATACTGAATTACTGATGGATAGCGTTCAGGGTTGGAGTATTTCTGACTGACTCTGCAGCTAAATTTAGTCCCTGCCATGCGCAGTCATCATGAGTCATGTTGTACATTATAGCATTGCTTTGAACATCAAAATTAAGTAGCTGTGTTTCCCTAGTCATATTCTATTACTACTTTCCATAGCAAGGCCTTAACCTTTTCGATCTGTCAAAGCGGTAGATATGTTCGGCATTTTCTACTTGTCTATTGAATGAGACTGTGCATAATGAAAATCATAACATCATTCTTGTTCATACAAGGTCGTGTATGGATGGTTGATCCACATCTGCCAGTGACCAGAATGCATTTTCTGTAGATTTTGACTTCAATTATTTTTATTTGTTCCTGACTACG

Coding sequence (CDS)

ATGTCGCTGTTGATTTTTTTGGGGGCTATCGTTTTACAGATTCCCGATGAGTTGGTGGAGCATTACTTAGGAAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGATCAGGCTTGTCGCTGTTGCCACACAGAAGTTCGTTGCTGATGTTGCAAGTGATGCTCTCCAGCATTGTAAGGCAAGGCAGGCAGCAGTAGTGAAGGACAAAAGGGATAAACAACAAAAGGATAAGCGGTTAATATTGACCATGGAGGATCTCTCAAAGGCACTTCGTGAGTATGGCGTCAATGTGAAACATCAAGAATATTTTGCTGATAGCCCTTCAACGGGAGTGGATTCTACTTCCAGAGAGGAATGA

Protein sequence

MSLLIFLGAIVLQIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE
Homology
[Close]
BLAST of IVF0008511 vs. ExPASy Swiss-Prot
Match: O04173 (Transcription initiation factor TFIID subunit 10 OS=Arabidopsis thaliana OX=3702 GN=TAF10 PE=1 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.9e-44
Identity = 92/105 (87.62%), Postives = 97/105 (92.38%), Query Frame = 0 

Query: 14  IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ 73
           IPD+LVEHYL KSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKAR A VVKDK  KQ
Sbjct: 32  IPDDLVEHYLAKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARPAPVVKDK--KQ 91

Query: 74  QKDKRLILTMEDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE 119
           QKDKRL+LTMEDLSKALREYGVNVKH EYFADSPSTG+D  +R+E
Sbjct: 92  QKDKRLVLTMEDLSKALREYGVNVKHPEYFADSPSTGMDPATRDE 134

[Close]
BLAST of IVF0008511 vs. ExPASy Swiss-Prot
Match: Q12962 (Transcription initiation factor TFIID subunit 10 OS=Homo sapiens OX=9606 GN=TAF10 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.1e-18
Identity = 44/90 (48.89%), Postives = 64/90 (71.11%), Query Frame = 0 

Query: 14  IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ 73
           IPD +  +YL ++GF+  D R+IRL+++A QKF++D+A+DALQHCK +  A    +   +
Sbjct: 130 IPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTASGSSR--SK 189

Query: 74  QKDKRLILTMEDLSKALREYGVNVKHQEYF 104
            KD++  LTMEDL+ AL EYG+NVK   YF
Sbjct: 190 SKDRKYTLTMEDLTPALSEYGINVKKPHYF 217

[Close]
BLAST of IVF0008511 vs. ExPASy Swiss-Prot
Match: Q8K0H5 (Transcription initiation factor TFIID subunit 10 OS=Mus musculus OX=10090 GN=Taf10 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.1e-18
Identity = 44/90 (48.89%), Postives = 64/90 (71.11%), Query Frame = 0 

Query: 14  IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ 73
           IPD +  +YL ++GF+  D R+IRL+++A QKF++D+A+DALQHCK +  A    +   +
Sbjct: 130 IPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTASGSSR--SK 189

Query: 74  QKDKRLILTMEDLSKALREYGVNVKHQEYF 104
            KD++  LTMEDL+ AL EYG+NVK   YF
Sbjct: 190 SKDRKYTLTMEDLTPALSEYGINVKKPHYF 217

[Close]
BLAST of IVF0008511 vs. ExPASy Swiss-Prot
Match: Q9XZT7 (Transcription initiation factor TFIID subunit 10b OS=Drosophila melanogaster OX=7227 GN=Taf10b PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.2e-15
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 0 

Query: 14  IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKAR-QAAVVKDKRDK 73
           IPD +  HYL   GFQ  D R++RL+++A QK+++D+  DALQH KAR            
Sbjct: 55  IPDAVTSHYLNMGGFQSDDKRIVRLISLAAQKYMSDIIDDALQHSKARTHMQTTNTPGGS 114

Query: 74  QQKDKRLILTMEDLSKALREYGVNVKHQEY 103
           + KD++  LTMEDL  AL +YG+NV+  +Y
Sbjct: 115 KAKDRKFTLTMEDLQPALADYGINVRKVDY 144

[Close]
BLAST of IVF0008511 vs. ExPASy Swiss-Prot
Match: Q9U5W9 (Transcription initiation factor TFIID subunit 10 OS=Drosophila melanogaster OX=7227 GN=Taf10 PE=1 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 3.2e-14
Identity = 40/96 (41.67%), Postives = 59/96 (61.46%), Query Frame = 0 

Query: 14  IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAV------VK 73
           IPD L  H L  +GF   D +++RLV+V+ QKF++D+A+DALQHCK R   +        
Sbjct: 71  IPDALTMHILKTAGFCTVDPKIVRLVSVSAQKFISDIANDALQHCKTRTTNIQHSSGHSS 130

Query: 74  DKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEYF 104
            K  K  KD++  L MEDL  AL ++G+ ++  +YF
Sbjct: 131 SKDKKNPKDRKYTLAMEDLVPALADHGITMRKPQYF 166

[Close]
BLAST of IVF0008511 vs. ExPASy TrEMBL
Match: A0A5A7VCX0 (NAD(P)-bd_dom domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001800 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 8.2e-50
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 14  IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ 73
           IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ
Sbjct: 328 IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ 387

Query: 74  QKDKRLILTMEDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE 119
           QKDKRLILTMEDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE
Sbjct: 388 QKDKRLILTMEDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE 432

[Close]
BLAST of IVF0008511 vs. ExPASy TrEMBL
Match: A0A1S3BD75 (Transcription initiation factor TFIID subunit 10 OS=Cucumis melo OX=3656 GN=LOC103488368 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 8.2e-50
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 14  IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ 73
           IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ
Sbjct: 32  IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ 91

Query: 74  QKDKRLILTMEDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE 119
           QKDKRLILTMEDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE
Sbjct: 92  QKDKRLILTMEDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE 136

[Close]
BLAST of IVF0008511 vs. ExPASy TrEMBL
Match: A0A6J1KB50 (Transcription initiation factor TFIID subunit 10 OS=Cucurbita maxima OX=3661 GN=LOC111492283 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.8e-49
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 14  IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ 73
           IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ
Sbjct: 32  IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ 91

Query: 74  QKDKRLILTMEDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE 119
           QKDKRLILTM+DLSKALREYGVNVKHQEYFADSPSTGVDSTSREE
Sbjct: 92  QKDKRLILTMDDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE 136

[Close]
BLAST of IVF0008511 vs. ExPASy TrEMBL
Match: A0A0A0LPV6 (Transcription initiation factor TFIID subunit 10 OS=Cucumis sativus OX=3659 GN=Csa_2G383360 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.8e-49
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 14  IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ 73
           IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ
Sbjct: 32  IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ 91

Query: 74  QKDKRLILTMEDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE 119
           QKDKRLILTM+DLSKALREYGVNVKHQEYFADSPSTGVDSTSREE
Sbjct: 92  QKDKRLILTMDDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE 136

[Close]
BLAST of IVF0008511 vs. ExPASy TrEMBL
Match: A0A6J1HHI7 (Transcription initiation factor TFIID subunit 10 OS=Cucurbita moschata OX=3662 GN=LOC111462992 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.8e-49
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 14  IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ 73
           IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ
Sbjct: 32  IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ 91

Query: 74  QKDKRLILTMEDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE 119
           QKDKRLILTM+DLSKALREYGVNVKHQEYFADSPSTGVDSTSREE
Sbjct: 92  QKDKRLILTMDDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE 136

[Close]
BLAST of IVF0008511 vs. NCBI nr
Match: XP_008445293.1 (PREDICTED: transcription initiation factor TFIID subunit 10 isoform X1 [Cucumis melo])

HSP 1 Score: 204 bits (520), Expect = 1.43e-65
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 14  IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ 73
           IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ
Sbjct: 32  IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ 91

Query: 74  QKDKRLILTMEDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE 118
           QKDKRLILTMEDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE
Sbjct: 92  QKDKRLILTMEDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE 136

[Close]
BLAST of IVF0008511 vs. NCBI nr
Match: XP_038886703.1 (transcription initiation factor TFIID subunit 10 isoform X1 [Benincasa hispida])

HSP 1 Score: 204 bits (520), Expect = 2.65e-65
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 14  IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ 73
           IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ
Sbjct: 51  IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ 110

Query: 74  QKDKRLILTMEDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE 118
           QKDKRLILTMEDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE
Sbjct: 111 QKDKRLILTMEDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE 155

[Close]
BLAST of IVF0008511 vs. NCBI nr
Match: XP_022962589.1 (transcription initiation factor TFIID subunit 10 [Cucurbita moschata] >XP_022997339.1 transcription initiation factor TFIID subunit 10 [Cucurbita maxima] >XP_023547186.1 transcription initiation factor TFIID subunit 10 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203 bits (517), Expect = 4.08e-65
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 14  IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ 73
           IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ
Sbjct: 32  IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ 91

Query: 74  QKDKRLILTMEDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE 118
           QKDKRLILTM+DLSKALREYGVNVKHQEYFADSPSTGVDSTSREE
Sbjct: 92  QKDKRLILTMDDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE 136

[Close]
BLAST of IVF0008511 vs. NCBI nr
Match: XP_004138687.1 (transcription initiation factor TFIID subunit 10 [Cucumis sativus])

HSP 1 Score: 203 bits (517), Expect = 4.08e-65
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 14  IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ 73
           IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ
Sbjct: 32  IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ 91

Query: 74  QKDKRLILTMEDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE 118
           QKDKRLILTM+DLSKALREYGVNVKHQEYFADSPSTGVDSTSREE
Sbjct: 92  QKDKRLILTMDDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE 136

[Close]
BLAST of IVF0008511 vs. NCBI nr
Match: XP_022132183.1 (transcription initiation factor TFIID subunit 10 [Momordica charantia])

HSP 1 Score: 201 bits (511), Expect = 3.35e-64
Identity = 102/105 (97.14%), Postives = 104/105 (99.05%), Query Frame = 0 

Query: 14  IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ 73
           IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQA++VKDKRDKQ
Sbjct: 32  IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQASIVKDKRDKQ 91

Query: 74  QKDKRLILTMEDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE 118
           QKDKRLILTMEDLSKALREYGVNVKHQEYFADSPSTGVD TSREE
Sbjct: 92  QKDKRLILTMEDLSKALREYGVNVKHQEYFADSPSTGVDPTSREE 136

[Close]
BLAST of IVF0008511 vs. TAIR 10
Match: AT4G31720.2 (TBP-associated factor II 15 )

HSP 1 Score: 179.1 bits (453), Expect = 2.1e-45
Identity = 92/105 (87.62%), Postives = 97/105 (92.38%), Query Frame = 0 

Query: 14  IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ 73
           IPD+LVEHYL KSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKAR A VVKDK  KQ
Sbjct: 32  IPDDLVEHYLAKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARPAPVVKDK--KQ 91

Query: 74  QKDKRLILTMEDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE 119
           QKDKRL+LTMEDLSKALREYGVNVKH EYFADSPSTG+D  +R+E
Sbjct: 92  QKDKRLVLTMEDLSKALREYGVNVKHPEYFADSPSTGMDPATRDE 134

[Close]
BLAST of IVF0008511 vs. TAIR 10
Match: AT4G31720.1 (TBP-associated factor II 15 )

HSP 1 Score: 179.1 bits (453), Expect = 2.1e-45
Identity = 92/105 (87.62%), Postives = 97/105 (92.38%), Query Frame = 0 

Query: 14  IPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQ 73
           IPD+LVEHYL KSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKAR A VVKDK  KQ
Sbjct: 32  IPDDLVEHYLAKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARPAPVVKDK--KQ 91

Query: 74  QKDKRLILTMEDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE 119
           QKDKRL+LTMEDLSKALREYGVNVKH EYFADSPSTG+D  +R+E
Sbjct: 92  QKDKRLVLTMEDLSKALREYGVNVKHPEYFADSPSTGMDPATRDE 134

The following BLAST results are available for this feature:
BLAST of IVF0008511 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O041732.9e-4487.62Transcription initiation factor TFIID subunit 10 OS=Arabidopsis thaliana OX=3702... [more]
Q129622.1e-1848.89Transcription initiation factor TFIID subunit 10 OS=Homo sapiens OX=9606 GN=TAF1... [more]
Q8K0H52.1e-1848.89Transcription initiation factor TFIID subunit 10 OS=Mus musculus OX=10090 GN=Taf... [more]
Q9XZT72.2e-1544.44Transcription initiation factor TFIID subunit 10b OS=Drosophila melanogaster OX=... [more]
Q9U5W93.2e-1441.67Transcription initiation factor TFIID subunit 10 OS=Drosophila melanogaster OX=7... [more]
BLAST of IVF0008511 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VCX08.2e-50100.00NAD(P)-bd_dom domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A1S3BD758.2e-50100.00Transcription initiation factor TFIID subunit 10 OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A6J1KB501.8e-4999.05Transcription initiation factor TFIID subunit 10 OS=Cucurbita maxima OX=3661 GN=... [more]
A0A0A0LPV61.8e-4999.05Transcription initiation factor TFIID subunit 10 OS=Cucumis sativus OX=3659 GN=C... [more]
A0A6J1HHI71.8e-4999.05Transcription initiation factor TFIID subunit 10 OS=Cucurbita moschata OX=3662 G... [more]
BLAST of IVF0008511 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008445293.11.43e-65100.00PREDICTED: transcription initiation factor TFIID subunit 10 isoform X1 [Cucumis ... [more]
XP_038886703.12.65e-65100.00transcription initiation factor TFIID subunit 10 isoform X1 [Benincasa hispida][more]
XP_022962589.14.08e-6599.05transcription initiation factor TFIID subunit 10 [Cucurbita moschata] >XP_022997... [more]
XP_004138687.14.08e-6599.05transcription initiation factor TFIID subunit 10 [Cucumis sativus][more]
XP_022132183.13.35e-6497.14transcription initiation factor TFIID subunit 10 [Momordica charantia][more]
BLAST of IVF0008511 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G31720.22.1e-4587.62TBP-associated factor II 15 [more]
AT4G31720.12.1e-4587.62TBP-associated factor II 15 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPRINTSPR01443TFIID30KDSUBcoord: 32..54
score: 64.35
coord: 78..100
score: 56.52
coord: 12..28
score: 50.59
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPFAMPF03540TFIID_30kDacoord: 14..61
e-value: 2.9E-23
score: 81.6
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPANTHERPTHR21242TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10coord: 13..103
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitCDDcd07982TAF10coord: 3..103
e-value: 5.5729E-49
score: 150.068

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0008511.1IVF0008511.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016573 histone acetylation
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
biological_process GO:0006413 translational initiation
biological_process GO:0006352 DNA-templated transcription, initiation
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0000124 SAGA complex
cellular_component GO:0005669 transcription factor TFIID complex
cellular_component GO:0005634 nucleus
molecular_function GO:1990841 promoter-specific chromatin binding
molecular_function GO:0016251 RNA polymerase II general transcription initiation factor activity
molecular_function GO:0003743 translation initiation factor activity