
IVF0008442 (gene) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATCTGGGGAAGAGGAAGAGTCAAACGAAAACTATAGATCCGACGAAGAGGAATAATCAGTCAAAAACTATGGATCCGACGAAGAGGAACAGTCCAGCGAAGAGGAATAGTCTGGGTTGTAAAGGAAGATGATGAGTGAAAGAGGAAGAGGATGATTATTTGAGGAAGATGATGGAGATCGGAGGAAAAGGAAACCAACAAAAGTAA ATGGATCTGGGGAAGAGGAAGAGTCAAACGAAAACTATAGATCCGACGAAGAGGAATAATCAGTCAAAAACTATGGATCCGACGAAGAGGAACAGTCCAGCGAAGAGGAATAAGGAAGAGGATGATTATTTGAGGAAGATGATGGAGATCGGAGGAAAAGGAAACCAACAAAAGTAA ATGGATCTGGGGAAGAGGAAGAGTCAAACGAAAACTATAGATCCGACGAAGAGGAATAATCAGTCAAAAACTATGGATCCGACGAAGAGGAACAGTCCAGCGAAGAGGAATAAGGAAGAGGATGATTATTTGAGGAAGATGATGGAGATCGGAGGAAAAGGAAACCAACAAAAGTAA MDLGKRKSQTKTIDPTKRNNQSKTMDPTKRNSPAKRNKEEDDYLRKMMEIGGKGNQQK Homology
BLAST of IVF0008442 vs. ExPASy TrEMBL
Match: A0A5A7UXT0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold340G00860 PE=4 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 1.4e-05 Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0
BLAST of IVF0008442 vs. ExPASy TrEMBL
Match: A0A5D3DFL7 (Collagen triple helix repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G001450 PE=4 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 4.0e-05 Identity = 28/37 (75.68%), Postives = 33/37 (89.19%), Query Frame = 0
BLAST of IVF0008442 vs. ExPASy TrEMBL
Match: A0A5A7UD84 (Collagen triple helix repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001290 PE=4 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 1.5e-04 Identity = 27/37 (72.97%), Postives = 33/37 (89.19%), Query Frame = 0
BLAST of IVF0008442 vs. NCBI nr
Match: KAA0060038.1 (hypothetical protein E6C27_scaffold340G00860 [Cucumis melo var. makuwa]) HSP 1 Score: 58.5 bits (140), Expect = 9.45e-10 Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0
BLAST of IVF0008442 vs. NCBI nr
Match: TYK22248.1 (Collagen triple helix repeat protein [Cucumis melo var. makuwa]) HSP 1 Score: 57.0 bits (136), Expect = 3.68e-09 Identity = 28/37 (75.68%), Postives = 33/37 (89.19%), Query Frame = 0
BLAST of IVF0008442 vs. NCBI nr
Match: KAA0051389.1 (Collagen triple helix repeat protein [Cucumis melo var. makuwa]) HSP 1 Score: 55.1 bits (131), Expect = 2.13e-08 Identity = 27/37 (72.97%), Postives = 33/37 (89.19%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
|