IVF0008419 (gene) Melon (IVF77) v1

Overview


Name	IVF0008419
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Histone H2A
Location	chr05: 23132563 .. 23133315 (+)
RNA-Seq Expression	IVF0008419
Synteny	IVF0008419

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCACAATCGTCAGTAAAATCCCAAGTAAATTATCGTTCCAGATTCCAAGAATTTTACAATGGAAGGAACCAAGGGTGCAGGAGGAAGAAAGGGCGGCGATAGAACTAAGGTCTCCAAGTCCGTCAAAGCCGGACTCCAATTCCCCGTCGGTAGAATCGGTCGGTACCTTAAGAAAGGCCGATACGCTAAGCGCACTGCCGCTGGTGCCCCGATCTACCTTGCTGCCGTCCTCGAATATCTCGCTGCTGAGGTAATTATTCAATCGAGATCCGATTCAATGTTCATTCGAACTCTCATTATGCAATATGTTTCCGATTTCTGAGATTTGTGATGTTTCGTAATGTAGGTCTTGGAATTGGCTGGGAATGCAGCGCGTGATAACAAGAAGAACAGGATAAACCCCAGGCATGTTCTTTTGGCTGTGAGGAACGATGAGGAGCTTGGTAAATTGCTTCAAGGAGTCACCATTGCAAGCGGTGGAGTTCTCCCGAACATCAATCCGGTTCTGCTTCCCAAGAAGACAGCGTCGAATTCCACTCCCACTGCTGAAAAGGCTCAGAAATCACCAAAGAAGGCTTAAATTAAGTATAGATTTCCGAGAATGATTTAAACTTTTTTTCTCTTTTGTATAAATTAGAATTCTCCTTGAATCCTTAGTTTCTTAGATTAACCGATGGTTTTGATCTCTGGTTTGCGTATGATGTACGTATCCATTTCACAATGTCTAATGGAAATCTTATCGTTTACTGGTT

mRNA sequence

ATCACAATCGTCAGTAAAATCCCAAGTAAATTATCGTTCCAGATTCCAAGAATTTTACAATGGAAGGAACCAAGGGTGCAGGAGGAAGAAAGGGCGGCGATAGAACTAAGGTCTCCAAGTCCGTCAAAGCCGGACTCCAATTCCCCGTCGGTAGAATCGGTCGGTACCTTAAGAAAGGCCGATACGCTAAGCGCACTGCCGCTGGTGCCCCGATCTACCTTGCTGCCGTCCTCGAATATCTCGCTGCTGAGGTCTTGGAATTGGCTGGGAATGCAGCGCGTGATAACAAGAAGAACAGGATAAACCCCAGGCATGTTCTTTTGGCTGTGAGGAACGATGAGGAGCTTGGTAAATTGCTTCAAGGAGTCACCATTGCAAGCGGTGGAGTTCTCCCGAACATCAATCCGGTTCTGCTTCCCAAGAAGACAGCGTCGAATTCCACTCCCACTGCTGAAAAGGCTCAGAAATCACCAAAGAAGGCTTAAATTAAGTATAGATTTCCGAGAATGATTTAAACTTTTTTTCTCTTTTGTATAAATTAGAATTCTCCTTGAATCCTTAGTTTCTTAGATTAACCGATGGTTTTGATCTCTGGTTTGCGTATGATGTACGTATCCATTTCACAATGTCTAATGGAAATCTTATCGTTTACTGGTT

Coding sequence (CDS)

ATGGAAGGAACCAAGGGTGCAGGAGGAAGAAAGGGCGGCGATAGAACTAAGGTCTCCAAGTCCGTCAAAGCCGGACTCCAATTCCCCGTCGGTAGAATCGGTCGGTACCTTAAGAAAGGCCGATACGCTAAGCGCACTGCCGCTGGTGCCCCGATCTACCTTGCTGCCGTCCTCGAATATCTCGCTGCTGAGGTCTTGGAATTGGCTGGGAATGCAGCGCGTGATAACAAGAAGAACAGGATAAACCCCAGGCATGTTCTTTTGGCTGTGAGGAACGATGAGGAGCTTGGTAAATTGCTTCAAGGAGTCACCATTGCAAGCGGTGGAGTTCTCCCGAACATCAATCCGGTTCTGCTTCCCAAGAAGACAGCGTCGAATTCCACTCCCACTGCTGAAAAGGCTCAGAAATCACCAAAGAAGGCTTAA

Protein sequence

MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKKTASNSTPTAEKAQKSPKKA

Homology

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BLAST of IVF0008419 vs. ExPASy Swiss-Prot
Match: Q94F49 (Probable histone H2A.5 OS=Arabidopsis thaliana OX=3702 GN=At5g27670 PE=1 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.7e-54
Identity = 117/140 (83.57%), Postives = 124/140 (88.57%), Query Frame = 0


Query: 4   TKGAGGRKGGDRTK-VSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLA 63
           T+GAGGRKGGDR K VSKSVKAGLQFPVGRI RYLKKGRYA R  +GAP+YLAAVLEYLA
Sbjct: 11  TRGAGGRKGGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLA 70

Query: 64  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKK 123
           AEVLELAGNAARDNKKNRINPRH+ LA+RNDEELG+LL GVTIASGGVLPNINPVLLPKK
Sbjct: 71  AEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKK 130

Query: 124 -TASNSTPTAEKAQKSPKKA 142
            TAS+S      A KSPKKA
Sbjct: 131 STASSSQAEKASATKSPKKA 150

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BLAST of IVF0008419 vs. ExPASy Swiss-Prot
Match: P25469 (Histone H2A.1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.4e-53
Identity = 119/141 (84.40%), Postives = 126/141 (89.36%), Query Frame = 0


Query: 4   TKGAGGRKGGDRTK-VSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLA 63
           TKGAGGRKGG R K V+KS+KAGLQFPVGRIGRYLKKGRYA+R  +GAPIYLAAVLEYLA
Sbjct: 7   TKGAGGRKGGPRKKSVTKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPIYLAAVLEYLA 66

Query: 64  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKK 123
           AEVLELAGNAARDNKK+RI PRHVLLAVRNDEELGKLL GVTIASGGVLPNINPVLLPKK
Sbjct: 67  AEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLPKK 126

Query: 124 T--ASNSTPTAEKAQKSPKKA 142
           +  A   +P A KA KSPKKA
Sbjct: 127 SAVAEEKSPKA-KAGKSPKKA 146

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BLAST of IVF0008419 vs. ExPASy Swiss-Prot
Match: Q2HU68 (Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.7e-52
Identity = 113/140 (80.71%), Postives = 122/140 (87.14%), Query Frame = 0


Query: 5   KGAGGRKGGDRTK-VSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAA 64
           KGAGGRKGG R K V++S +AGLQFPVGRIGRYLKKGRYA+R   GAP+YLAAVLEYLAA
Sbjct: 9   KGAGGRKGGPRKKSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAA 68

Query: 65  EVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKKT 124
           EVLELAGNAARDNKKNRI PRHVLLAVRNDEELGKLL GVTIA GGVLPNINP+LLPKK 
Sbjct: 69  EVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKN 128

Query: 125 --ASNSTPTAEKAQKSPKKA 142
             A+ +T +  KA KSPKKA
Sbjct: 129 EKAATTTKSPSKATKSPKKA 148

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BLAST of IVF0008419 vs. ExPASy Swiss-Prot
Match: Q2HU65 (Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.3e-51
Identity = 114/145 (78.62%), Postives = 123/145 (84.83%), Query Frame = 0


Query: 5   KGAGGRKGGDRTK--VSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLA 64
           KGAGGRKGG   K  V++S++AGLQFPVGRIGRYLKKGRYA+R   GAP+YLAAVLEYLA
Sbjct: 9   KGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLA 68

Query: 65  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKK 124
           AEVLELAGNAARDNKKNRI PRHVLLAVRNDEELGKLL GVTIA GGVLPNINPVLLPKK
Sbjct: 69  AEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 128

Query: 125 TASNSTPTAE------KAQKSPKKA 142
           T  ++T + E      KA KSPKKA
Sbjct: 129 TERSNTVSKEPKSPKPKAGKSPKKA 153

[Close]

BLAST of IVF0008419 vs. ExPASy Swiss-Prot
Match: Q1S053 (Probable histone H2A.3 OS=Medicago truncatula OX=3880 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 2.9e-51
Identity = 112/143 (78.32%), Postives = 121/143 (84.62%), Query Frame = 0


Query: 5   KGAGGRKGGDRTK--VSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLA 64
           KGAGGRKGG   K  V++S++AGLQFPVGRIGRYLKKGRYA+R   GAP+YLAAVLEYLA
Sbjct: 10  KGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLA 69

Query: 65  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKK 124
           AEVLELAGNAARDNKKNRI PRH+LLAVRNDEELGKLL GVTIA GGVLPNINP+LLPKK
Sbjct: 70  AEVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKK 129

Query: 125 TASNST----PTAEKAQKSPKKA 142
           T   +T    P   KA KSPKKA
Sbjct: 130 TERANTGGKEPKTTKAGKSPKKA 152

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BLAST of IVF0008419 vs. ExPASy TrEMBL
Match: A0A5A7TYC1 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00570 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 8.0e-68
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60
           MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKTASNSTPTAEKAQKSPKKA 142
           KKTASNSTPTAEKAQKSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of IVF0008419 vs. ExPASy TrEMBL
Match: A0A1S3BZ15 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103494731 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 8.0e-68
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60
           MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKTASNSTPTAEKAQKSPKKA 142
           KKTASNSTPTAEKAQKSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of IVF0008419 vs. ExPASy TrEMBL
Match: A0A0A0LLV9 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_2G030610 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.3e-67
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60
           MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYA+RTAAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAQRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKTASNSTPTAEKAQKSPKKA 142
           KKTASNSTPTAEKAQKSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of IVF0008419 vs. ExPASy TrEMBL
Match: A0A6J1DB39 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111018847 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.9e-65
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60
           MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKTASNSTP-TAEKAQKSPKK 141
           KKT+SNSTP TAEKA KSPKK
Sbjct: 121 KKTSSNSTPSTAEKAPKSPKK 141

[Close]

BLAST of IVF0008419 vs. ExPASy TrEMBL
Match: A0A6J1G397 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111450390 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.5e-61
Identity = 129/141 (91.49%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60
           MEGTKGAGGRKGG+R+K+SKS KAGLQFPV RIGRYLKKGRYA+RT AGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNI+PVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120

Query: 121 KKTASNSTPTAEKAQKSPKKA 142
           KK++SNST  AEKAQKSPKKA
Sbjct: 121 KKSSSNSTSPAEKAQKSPKKA 141

[Close]

BLAST of IVF0008419 vs. NCBI nr
Match: XP_008454292.1 (PREDICTED: probable histone H2A.5 [Cucumis melo] >KAA0048024.1 putative histone H2A.5 [Cucumis melo var. makuwa] >TYK13795.1 putative histone H2A.5 [Cucumis melo var. makuwa])

HSP 1 Score: 267 bits (683), Expect = 6.04e-90
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60
           MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKTASNSTPTAEKAQKSPKKA 141
           KKTASNSTPTAEKAQKSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of IVF0008419 vs. NCBI nr
Match: XP_004144786.1 (probable histone H2A.5 [Cucumis sativus] >KGN60951.1 hypothetical protein Csa_021264 [Cucumis sativus])

HSP 1 Score: 266 bits (679), Expect = 2.46e-89
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60
           MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYA+RTAAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAQRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKTASNSTPTAEKAQKSPKKA 141
           KKTASNSTPTAEKAQKSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of IVF0008419 vs. NCBI nr
Match: XP_038890710.1 (probable histone H2A.5 [Benincasa hispida])

HSP 1 Score: 266 bits (679), Expect = 2.46e-89
Identity = 139/141 (98.58%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60
           MEGTKGAGGRKGGDRTK+SKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKISKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRH+LLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKTASNSTPTAEKAQKSPKKA 141
           KKTASNSTPTAEKAQKSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of IVF0008419 vs. NCBI nr
Match: XP_022150784.1 (probable histone H2A.5 [Momordica charantia])

HSP 1 Score: 258 bits (659), Expect = 2.86e-86
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60
           MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKTASNSTP-TAEKAQKSPKK 140
           KKT+SNSTP TAEKA KSPKK
Sbjct: 121 KKTSSNSTPSTAEKAPKSPKK 141

[Close]

BLAST of IVF0008419 vs. NCBI nr
Match: XP_022946249.1 (histone H2A.1-like [Cucurbita moschata] >XP_022946250.1 histone H2A.1-like [Cucurbita moschata] >XP_023545339.1 histone H2A.1-like [Cucurbita pepo subsp. pepo] >KAG6599229.1 hypothetical protein SDJN03_09007, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030234.1 hypothetical protein SDJN02_08581 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 246 bits (629), Expect = 1.04e-81
Identity = 129/141 (91.49%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60
           MEGTKGAGGRKGG+R+K+SKS KAGLQFPV RIGRYLKKGRYA+RT AGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNI+PVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120

Query: 121 KKTASNSTPTAEKAQKSPKKA 141
           KK++SNST  AEKAQKSPKKA
Sbjct: 121 KKSSSNSTSPAEKAQKSPKKA 141

[Close]

BLAST of IVF0008419 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 212.2 bits (539), Expect = 2.6e-55
Identity = 117/140 (83.57%), Postives = 124/140 (88.57%), Query Frame = 0


Query: 4   TKGAGGRKGGDRTK-VSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLA 63
           T+GAGGRKGGDR K VSKSVKAGLQFPVGRI RYLKKGRYA R  +GAP+YLAAVLEYLA
Sbjct: 11  TRGAGGRKGGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLA 70

Query: 64  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKK 123
           AEVLELAGNAARDNKKNRINPRH+ LA+RNDEELG+LL GVTIASGGVLPNINPVLLPKK
Sbjct: 71  AEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKK 130

Query: 124 -TASNSTPTAEKAQKSPKKA 142
            TAS+S      A KSPKKA
Sbjct: 131 STASSSQAEKASATKSPKKA 150

[Close]

BLAST of IVF0008419 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 194.5 bits (493), Expect = 5.7e-50
Identity = 110/145 (75.86%), Postives = 123/145 (84.83%), Query Frame = 0


Query: 5   KGAGGRKGGDRTK---VSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYL 64
           KGA GR+ G   K   VS+SVK+GLQFPVGRIGRYLKKGRY+KR   GAP+YLAAVLEYL
Sbjct: 9   KGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYL 68

Query: 65  AAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPK 124
           AAEVLELAGNAARDNKKNRI PRHVLLAVRNDEELG LL+GVTIA GGVLPNINP+LLPK
Sbjct: 69  AAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPK 128

Query: 125 KT--ASNSTPTAE---KAQKSPKKA 142
           K+  A+++T T +   KA KSPKK+
Sbjct: 129 KSEKAASTTKTPKSPSKATKSPKKS 153

[Close]

BLAST of IVF0008419 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 186.8 bits (473), Expect = 1.2e-47
Identity = 106/140 (75.71%), Postives = 118/140 (84.29%), Query Frame = 0


Query: 5   KGAGGRK--GGDRTK-VSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYL 64
           K  GGRK  G  +TK VSKS+KAGLQFPVGRI R+LKKGRYA+R   GAP+Y+AAVLEYL
Sbjct: 9   KAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAVLEYL 68

Query: 65  AAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPK 124
           AAEVLELAGNAARDNKK+RI PRH+LLA+RNDEELGKLL GVTIA GGVLPNIN VLLPK
Sbjct: 69  AAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPK 128

Query: 125 KTASNSTPTAEKAQKSPKKA 142
           K+A+   P  EKA KSP K+
Sbjct: 129 KSATK--PAEEKATKSPVKS 146

[Close]

BLAST of IVF0008419 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 181.0 bits (458), Expect = 6.5e-46
Identity = 110/169 (65.09%), Postives = 123/169 (72.78%), Query Frame = 0


Query: 5   KGAGGRKGGDRTK---VSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYL 64
           KGA GR+ G   K   VS+SVK+GLQFPVGRIGRYLKKGRY+KR   GAP+YLAAVLEYL
Sbjct: 9   KGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYL 68

Query: 65  AAE------------------------VLELAGNAARDNKKNRINPRHVLLAVRNDEELG 124
           AAE                        VLELAGNAARDNKKNRI PRHVLLAVRNDEELG
Sbjct: 69  AAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG 128

Query: 125 KLLQGVTIASGGVLPNINPVLLPKKT--ASNSTPTAE---KAQKSPKKA 142
            LL+GVTIA GGVLPNINP+LLPKK+  A+++T T +   KA KSPKK+
Sbjct: 129 TLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKATKSPKKS 177

[Close]

BLAST of IVF0008419 vs. TAIR 10
Match: AT1G51060.1 (histone H2A 10 )

HSP 1 Score: 166.4 bits (420), Expect = 1.7e-41
Identity = 88/121 (72.73%), Postives = 102/121 (84.30%), Query Frame = 0


Query: 12  GGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELAGN 71
           G  +   ++S KAGLQFPVGRI R+LKKG+YA+R  AGAP+YLAAVLEYLAAEVLELAGN
Sbjct: 11  GSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGN 70

Query: 72  AARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKKTASNSTPTA 131
           AARDNKK RI PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKKT + S P+A
Sbjct: 71  AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGA-SKPSA 130

Query: 132 E 133
           E
Sbjct: 131 E 130

The following BLAST results are available for this feature:

BLAST of IVF0008419 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94F49	3.7e-54	83.57	Probable histone H2A.5 OS=Arabidopsis thaliana OX=3702 GN=At5g27670 PE=1 SV=1	[more]
P25469	1.4e-53	84.40	Histone H2A.1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1	[more]
Q2HU68	2.7e-52	80.71	Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 P...	[more]
Q2HU65	1.3e-51	78.62	Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 P...	[more]
Q1S053	2.9e-51	78.32	Probable histone H2A.3 OS=Medicago truncatula OX=3880 PE=3 SV=1	[more]

BLAST of IVF0008419 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TYC1	8.0e-68	100.00	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00570 PE...	[more]
A0A1S3BZ15	8.0e-68	100.00	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103494731 PE=3 SV=1	[more]
A0A0A0LLV9	2.3e-67	99.29	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_2G030610 PE=3 SV=1	[more]
A0A6J1DB39	4.9e-65	97.87	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111018847 PE=3 SV=1	[more]
A0A6J1G397	1.5e-61	91.49	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111450390 PE=3 SV=1	[more]

BLAST of IVF0008419 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454292.1	6.04e-90	100.00	PREDICTED: probable histone H2A.5 [Cucumis melo] >KAA0048024.1 putative histone ...	[more]
XP_004144786.1	2.46e-89	99.29	probable histone H2A.5 [Cucumis sativus] >KGN60951.1 hypothetical protein Csa_02...	[more]
XP_038890710.1	2.46e-89	98.58	probable histone H2A.5 [Benincasa hispida]	[more]
XP_022150784.1	2.86e-86	97.87	probable histone H2A.5 [Momordica charantia]	[more]
XP_022946249.1	1.04e-81	91.49	histone H2A.1-like [Cucurbita moschata] >XP_022946250.1 histone H2A.1-like [Cucu...	[more]

BLAST of IVF0008419 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27670.1	2.6e-55	83.57	histone H2A 7	[more]
AT5G02560.1	5.7e-50	75.86	histone H2A 12	[more]
AT5G59870.1	1.2e-47	75.71	histone H2A 6	[more]
AT5G02560.2	6.5e-46	65.09	histone H2A 12	[more]
AT1G51060.1	1.7e-41	72.73	histone H2A 10	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 16..38 score: 62.61 coord: 45..60 score: 73.81 coord: 60..73 score: 89.46 coord: 102..120 score: 76.19 coord: 74..88 score: 70.35
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 5..125 e-value: 2.1E-74 score: 263.2
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 7..122 e-value: 8.79571E-64 score: 188.698
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..133 e-value: 5.5E-60 score: 202.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 9..127
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 14..91 e-value: 3.3E-12 score: 46.9
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 94..127 e-value: 1.4E-18 score: 66.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..141
None	No IPR available	PANTHER	PTHR23430:SF238	HISTONE H2A	coord: 4..130
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 4..130
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 24..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0008419.1	IVF0008419.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000775	chromosome, centromeric region
cellular_component	GO:0000792	heterochromatin
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity