IVF0008394 (gene) Melon (IVF77) v1

Overview


Name	IVF0008394
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	classical arabinogalactan protein 1-like
Location	chr11: 25098625 .. 25099176 (-)
RNA-Seq Expression	IVF0008394
Synteny	IVF0008394

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAAACCATTCATCTCTCTTGTCTTCTTTTCATCTTCCTTTCCCTGTCATCAATGTCTCTTTCTCTTTGGAACTATCGCACCAACTTCCTCCATCTACGTCTCCTGTAAATTCTCCTCCACTACCATCTCCTACTCCATTCCCTAATGTTCCAGCAGTTCTCCGGCCGAATCTCCTCTCCATTCTCCTCCTGCGCCTCCTCCTTCAGATCTCCCTCCCACTCCATCTCCAGCGCCTGTTCTTTCTCCTGCACCCACTCCTTCTCATTCTCTAGCGGCCGATAGTGATTCCGGTAATATTACTTCCGGTGGCGGTGGAGAAGACTCCGAAGTCTCTAAAGGCGGGATGAATGGAGGAAAGAAGGCTGGAATTGCAGTTGGAGTGATTGCGGCACTGTGTTTTGTTGGAATGGAGGATTTGTGTACAAGAAGCGTCAGGATAACATTCGTCGATCTCAGTACGGGAGTGCTGCTAGGTCTTCGTTTTGTGAGTTATTTGGAATTGAATGGCCATGGTACGGAAATCTCTGCTTAATTAGAAACGGATAG

mRNA sequence

ATGGCGAAAACCATTCATCTCTCTTGTCTTCTTTTCATCTTCCTTTCCCTGTCATCAATGTCTCTTTCTCTTTGGAACTATCGCACCAACTTCCTCCATCTACGTCTCCTCAGTTCTCCGGCCGAATCTCCTCTCCATTCTCCTCCTGCGCCTCCTCCTTCAGATCTCCCTCCCACTCCATCTCCAGCGCCTGTTCTTTCTCCTGCACCCACTCCTTCTCATTCTCTAGCGGCCGATAGTGATTCCGGTAATATTACTTCCGGTGGCGGTGGAGAAGACTCCGAAGTCTCTAAAGGCGGGATGAATGGAGGAAAGAAGGCTGGAATTGCAGTTGGAGTGATTGCGGCACTGTGTTTTCGTCAGGATAACATTCGTCGATCTCAGTACGGGAGTGCTGCTAGGTCTTCGTTTTGTGAGTTATTTGGAATTGAATGGCCATGGTACGGAAATCTCTGCTTAATTAGAAACGGATAG

Coding sequence (CDS)

ATGGCGAAAACCATTCATCTCTCTTGTCTTCTTTTCATCTTCCTTTCCCTGTCATCAATGTCTCTTTCTCTTTGGAACTATCGCACCAACTTCCTCCATCTACGTCTCCTCAGTTCTCCGGCCGAATCTCCTCTCCATTCTCCTCCTGCGCCTCCTCCTTCAGATCTCCCTCCCACTCCATCTCCAGCGCCTGTTCTTTCTCCTGCACCCACTCCTTCTCATTCTCTAGCGGCCGATAGTGATTCCGGTAATATTACTTCCGGTGGCGGTGGAGAAGACTCCGAAGTCTCTAAAGGCGGGATGAATGGAGGAAAGAAGGCTGGAATTGCAGTTGGAGTGATTGCGGCACTGTGTTTTCGTCAGGATAACATTCGTCGATCTCAGTACGGGAGTGCTGCTAGGTCTTCGTTTTGTGAGTTATTTGGAATTGAATGGCCATGGTACGGAAATCTCTGCTTAATTAGAAACGGATAG

Protein sequence

MAKTIHLSCLLFIFLSLSSMSLSLWNYRTNFLHLRLLSSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFRQDNIRRSQYGSAARSSFCELFGIEWPWYGNLCLIRNG

Homology

[Close]

BLAST of IVF0008394 vs. ExPASy TrEMBL
Match: A0A5D3CV84 (Pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00190 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.1e-44
Identity = 123/165 (74.55%), Postives = 126/165 (76.36%), Query Frame = 0


Query: 1   MAKTIHLSCLLFIFLSL---SSMSLSLWNY---------------RTNFLHLRLLSSPAE 60
           MAKTIHLSCLLFIFLSL    S SL L +                 T F ++   SSPAE
Sbjct: 1   MAKTIHLSCLLFIFLSLFINVSFSLELSHQLPPSTSPVNSPPLPSPTPFPNVP-ASSPAE 60

Query: 61  SPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVSKGGMN 120
           SPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVSKGGMN
Sbjct: 61  SPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVSKGGMN 120

Query: 121 GGKKAGIAVGVIAALCF----------RQDNIRRSQYGSAARSSF 138
           GGKKAGIAVGVIAALCF          RQDNIRRSQYGSAARSSF
Sbjct: 121 GGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGSAARSSF 164

[Close]

BLAST of IVF0008394 vs. ExPASy TrEMBL
Match: A0A1S3CKF5 (pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103501947 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.1e-44
Identity = 123/165 (74.55%), Postives = 126/165 (76.36%), Query Frame = 0


Query: 1   MAKTIHLSCLLFIFLSL---SSMSLSLWNY---------------RTNFLHLRLLSSPAE 60
           MAKTIHLSCLLFIFLSL    S SL L +                 T F ++   SSPAE
Sbjct: 1   MAKTIHLSCLLFIFLSLFINVSFSLELSHQLPPSTSPVNSPPLPSPTPFPNVP-ASSPAE 60

Query: 61  SPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVSKGGMN 120
           SPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVSKGGMN
Sbjct: 61  SPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVSKGGMN 120

Query: 121 GGKKAGIAVGVIAALCF----------RQDNIRRSQYGSAARSSF 138
           GGKKAGIAVGVIAALCF          RQDNIRRSQYGSAARSSF
Sbjct: 121 GGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGSAARSSF 164

[Close]

BLAST of IVF0008394 vs. ExPASy TrEMBL
Match: A0A0A0KGE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G140840 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.8e-36
Identity = 109/165 (66.06%), Postives = 117/165 (70.91%), Query Frame = 0


Query: 1   MAKTIHLSCLLFIFLSL-SSMSLSLWNYR-----------------TNFLHLRLLSSPAE 60
           M KTIHLSCLLFIF+SL +++S SL   +                 T   H    SSP E
Sbjct: 1   MVKTIHLSCLLFIFVSLFNNVSFSLEQPQQLPPSPSPVNSPPLPSPTPLPHAP-ASSPVE 60

Query: 61  SPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVSKGGMN 120
           SPLHSPPAPPPSDLP TPSPAP+L P  +PS S AADSDS NITSGGGGEDSEVSKGGMN
Sbjct: 61  SPLHSPPAPPPSDLPHTPSPAPLLPPVSSPSISPAADSDSSNITSGGGGEDSEVSKGGMN 120

Query: 121 GGKKAGIAVGVIAALCF----------RQDNIRRSQYGSAARSSF 138
           GGKKAGIAVGVIAALCF          RQDNIRRSQYG+AARSSF
Sbjct: 121 GGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNAARSSF 164

[Close]

BLAST of IVF0008394 vs. ExPASy TrEMBL
Match: A0A6J1K7T9 (lysine-rich arabinogalactan protein 18-like OS=Cucurbita maxima OX=3661 GN=LOC111490958 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 5.0e-26
Identity = 77/110 (70.00%), Postives = 85/110 (77.27%), Query Frame = 0


Query: 38  SSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVS 97
           SSPAESPL SPPAPPPSDL P+PSPA V SP+P P+ SL ADSD  N  + GGG ++E S
Sbjct: 58  SSPAESPLKSPPAPPPSDLTPSPSPARVPSPSPAPAPSLTADSDFRNSIANGGGGETEAS 117

Query: 98  KGGMNGGKKAGIAVGVIAALCF----------RQDNIRRSQYGSAARSSF 138
           KGGMNGGKKAGIAVGVIAA CF          RQDNIRRSQ+G+AARSSF
Sbjct: 118 KGGMNGGKKAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQFGNAARSSF 167

[Close]

BLAST of IVF0008394 vs. ExPASy TrEMBL
Match: A0A6J1JA87 (proline-rich receptor-like protein kinase PERK12 OS=Cucurbita maxima OX=3661 GN=LOC111483972 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 7.2e-25
Identity = 77/110 (70.00%), Postives = 83/110 (75.45%), Query Frame = 0


Query: 38  SSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVS 97
           SSP ESPLHSPPAPPPSDL P+PSPA V SP+P  + + AADSD  N  S  GG +SE S
Sbjct: 53  SSPVESPLHSPPAPPPSDLVPSPSPARVPSPSPNLAPTPAADSDFRNSISNNGGVESESS 112

Query: 98  KGGMNGGKKAGIAVGVIAALCF----------RQDNIRRSQYGSAARSSF 138
           KGGMNGGKKAGIAVGVIAA CF          RQDNIRRSQYG+AARSSF
Sbjct: 113 KGGMNGGKKAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQYGNAARSSF 162

[Close]

BLAST of IVF0008394 vs. NCBI nr
Match: XP_008463942.2 (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 [Cucumis melo] >KAA0035341.1 pollen-specific leucine-rich repeat extensin-like protein 1 [Cucumis melo var. makuwa] >TYK14296.1 pollen-specific leucine-rich repeat extensin-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 188 bits (478), Expect = 4.27e-58
Identity = 123/165 (74.55%), Postives = 126/165 (76.36%), Query Frame = 0


Query: 1   MAKTIHLSCLLFIFLSLS---SMSLSLWNYR---------------TNFLHLRLLSSPAE 60
           MAKTIHLSCLLFIFLSL    S SL L +                 T F ++   SSPAE
Sbjct: 1   MAKTIHLSCLLFIFLSLFINVSFSLELSHQLPPSTSPVNSPPLPSPTPFPNVPA-SSPAE 60

Query: 61  SPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVSKGGMN 120
           SPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVSKGGMN
Sbjct: 61  SPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVSKGGMN 120

Query: 121 GGKKAGIAVGVIAALCF----------RQDNIRRSQYGSAARSSF 137
           GGKKAGIAVGVIAALCF          RQDNIRRSQYGSAARSSF
Sbjct: 121 GGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGSAARSSF 164

[Close]

BLAST of IVF0008394 vs. NCBI nr
Match: XP_011656995.1 (proline-rich receptor-like protein kinase PERK9 [Cucumis sativus] >KGN46836.1 hypothetical protein Csa_020743 [Cucumis sativus])

HSP 1 Score: 161 bits (407), Expect = 2.60e-47
Identity = 109/165 (66.06%), Postives = 117/165 (70.91%), Query Frame = 0


Query: 1   MAKTIHLSCLLFIFLSL-SSMSLSLWNYR-----------------TNFLHLRLLSSPAE 60
           M KTIHLSCLLFIF+SL +++S SL   +                 T   H    SSP E
Sbjct: 1   MVKTIHLSCLLFIFVSLFNNVSFSLEQPQQLPPSPSPVNSPPLPSPTPLPHAPA-SSPVE 60

Query: 61  SPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVSKGGMN 120
           SPLHSPPAPPPSDLP TPSPAP+L P  +PS S AADSDS NITSGGGGEDSEVSKGGMN
Sbjct: 61  SPLHSPPAPPPSDLPHTPSPAPLLPPVSSPSISPAADSDSSNITSGGGGEDSEVSKGGMN 120

Query: 121 GGKKAGIAVGVIAALCF----------RQDNIRRSQYGSAARSSF 137
           GGKKAGIAVGVIAALCF          RQDNIRRSQYG+AARSSF
Sbjct: 121 GGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNAARSSF 164

[Close]

BLAST of IVF0008394 vs. NCBI nr
Match: XP_022995398.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita maxima])

HSP 1 Score: 126 bits (316), Expect = 1.72e-33
Identity = 77/110 (70.00%), Postives = 85/110 (77.27%), Query Frame = 0


Query: 38  SSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVS 97
           SSPAESPL SPPAPPPSDL P+PSPA V SP+P P+ SL ADSD  N  + GGG ++E S
Sbjct: 58  SSPAESPLKSPPAPPPSDLTPSPSPARVPSPSPAPAPSLTADSDFRNSIANGGGGETEAS 117

Query: 98  KGGMNGGKKAGIAVGVIAALCF----------RQDNIRRSQYGSAARSSF 137
           KGGMNGGKKAGIAVGVIAA CF          RQDNIRRSQ+G+AARSSF
Sbjct: 118 KGGMNGGKKAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQFGNAARSSF 167

[Close]

BLAST of IVF0008394 vs. NCBI nr
Match: XP_023534499.1 (alpha carbonic anhydrase 8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 126 bits (316), Expect = 1.72e-33
Identity = 77/110 (70.00%), Postives = 85/110 (77.27%), Query Frame = 0


Query: 38  SSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVS 97
           SSPAESPL SPPAPPPSDL P+PSPA V SP+P P+ SL ADSD  N  + GGG ++E S
Sbjct: 58  SSPAESPLKSPPAPPPSDLTPSPSPARVPSPSPAPAPSLTADSDFRNSIANGGGGETETS 117

Query: 98  KGGMNGGKKAGIAVGVIAALCF----------RQDNIRRSQYGSAARSSF 137
           KGGMNGGKKAGIAVGVIAA CF          RQDNIRRSQ+G+AARSSF
Sbjct: 118 KGGMNGGKKAGIAVGVIAAACFVGVGGIVYKKRQDNIRRSQFGNAARSSF 167

[Close]

BLAST of IVF0008394 vs. NCBI nr
Match: KAG6605547.1 (hypothetical protein SDJN03_02864, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013894.1 hypothetical protein SDJN02_24063, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 126 bits (316), Expect = 1.72e-33
Identity = 77/110 (70.00%), Postives = 85/110 (77.27%), Query Frame = 0


Query: 38  SSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVS 97
           SSPAESPL SPPAPPPSDL P+PSPA V SP+P P+ SL ADSD  N  + GGG ++E S
Sbjct: 58  SSPAESPLKSPPAPPPSDLTPSPSPARVPSPSPAPAPSLTADSDFRNSIANGGGGETETS 117

Query: 98  KGGMNGGKKAGIAVGVIAALCF----------RQDNIRRSQYGSAARSSF 137
           KGGMNGGKKAGIAVGVIAA CF          RQDNIRRSQ+G+AARSSF
Sbjct: 118 KGGMNGGKKAGIAVGVIAAACFVGVGGIVYKKRQDNIRRSQFGNAARSSF 167

[Close]

BLAST of IVF0008394 vs. TAIR 10
Match: AT3G45230.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 55.8 bits (133), Expect = 3.5e-08
Identity = 54/125 (43.20%), Postives = 68/125 (54.40%), Query Frame = 0


Query: 38  SSPAESPL-----------HSP---PAPPPSDLPPTP----SPAPVLSPAPTPSHSLAAD 97
           +SPAESP+           HSP   PA  PS  PP P    SP+   SP+P+P    A+D
Sbjct: 51  NSPAESPIEYSSPPEPETEHSPSPSPANSPSVSPPLPNDSQSPSSSASPSPSPE---ASD 110

Query: 98  SDSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCF----------RQDNIRRSQY 135
            +  +IT   G +    S GGM+GGKK G+A G IAA+C           RQ+NIRRS+Y
Sbjct: 111 VNHSDITGIEGEKLPSGSGGGMSGGKKVGVAFGAIAAVCVVGVAGFVYKKRQENIRRSRY 170

The following BLAST results are available for this feature:

BLAST of IVF0008394 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0008394 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CV84	1.1e-44	74.55	Pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucumis melo var....	[more]
A0A1S3CKF5	1.1e-44	74.55	pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucumis melo OX=3...	[more]
A0A0A0KGE9	1.8e-36	66.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G140840 PE=4 SV=1	[more]
A0A6J1K7T9	5.0e-26	70.00	lysine-rich arabinogalactan protein 18-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1JA87	7.2e-25	70.00	proline-rich receptor-like protein kinase PERK12 OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of IVF0008394 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463942.2	4.27e-58	74.55	PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 [Cucumis ...	[more]
XP_011656995.1	2.60e-47	66.06	proline-rich receptor-like protein kinase PERK9 [Cucumis sativus] >KGN46836.1 hy...	[more]
XP_022995398.1	1.72e-33	70.00	lysine-rich arabinogalactan protein 18-like [Cucurbita maxima]	[more]
XP_023534499.1	1.72e-33	70.00	alpha carbonic anhydrase 8-like [Cucurbita pepo subsp. pepo]	[more]
KAG6605547.1	1.72e-33	70.00	hypothetical protein SDJN03_02864, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of IVF0008394 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G45230.1	3.5e-08	43.20	hydroxyproline-rich glycoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..101
None	No IPR available	PANTHER	PTHR36721	PROLINE-RICH FAMILY PROTEIN	coord: 39..137
None	No IPR available	PANTHER	PTHR36721:SF5	PROTEIN, PUTATIVE-RELATED	coord: 39..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0008394.2	IVF0008394.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane