IVF0008347 (gene) Melon (IVF77) v1

Overview


Name	IVF0008347
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	MYB transcription factor
Location	chr12: 25619707 .. 25620633 (+)
RNA-Seq Expression	IVF0008347
Synteny	IVF0008347

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCAGCAGAGGGCACTGGCGGCCTGCAGAAGACGAGAAGCTTCGAGAGCTGGTGGAGCGTTACGGACCTCATAACTGGAACGCCATAGCTCAAAAGCTTCAAGGAAGATCTGGGAAGAGCTGCCGCTTGAGATGGTTCAATCAGTTGGATCCTCGAATCAACAGAAGCCCTTTCACCGAGGAGGAAGAAGAGAGGCTGATGGCGTCCCACAGGGTTCATGGCAACAGATGGGCCATCATCGCAAGGCTTTTCCCCGGCCGCACCGATAACGCAGTCAAGAACCACTGGCACGTCATCATGGCTCGTAGGTCTAGAAATAAATCCAAAACCCAAACCCTAACACAAACCCTAACCCAAACACACAATAATAATCATAATAATAATCATCGTCTTCTTCTTTCTTCCTTTCTCCAACTCCATGCATATCCCACTTCTACTATTTCATTCGTCCCCAAACCACCATCTGGTAATTAATTATATACATTATTCTTTCTTTTTTTTTTTCTTTACATGTGTGTGTATGTGTTTCCATTATTATAATTTAATTATATGTATCTATGGCAGATGATGCAGCAGCAGCAGCAGCAGCGCATAGTAGTTGTTCCATTATTCATTATTATGACTTTCTCCAAGTAAATAGTACGGATTCTACGAATGGAAGTGAAGTGATAGATAACTCATCAAGAAAAGAGGATTATGAAGAGGTGAATAATAATAATAATAGTGGAGAACAACAGGCGGTACTACTTCCCTTCATTGATTTTTTTTCTGCCTCCAATAACGACACATCCATCTCATGATCCTCCTAAACACACACACATATATAACCAACCCAAAAAATTAAACCTCGAGCTGCTTTATATATATATTCTCACATTTCCTCTAACTCACTTGATGCATCATGGAAATCACAATACCCCGCCC

mRNA sequence

ATGTGCAGCAGAGGGCACTGGCGGCCTGCAGAAGACGAGAAGCTTCGAGAGCTGGTGGAGCGTTACGGACCTCATAACTGGAACGCCATAGCTCAAAAGCTTCAAGGAAGATCTGGGAAGAGCTGCCGCTTGAGATGCCCTTTCACCGAGGAGGAAGAAGAGAGGCTGATGGCGTCCCACAGGGTTCATGGCAACAGATGGGCCATCATCGCAAGGCTTTTCCCCGGCCGCACCGATAACGCAGTCAAGAACCACTGGCACGTCATCATGGCTCGTAGGTCTAGAAATAAATCCAAAACCCAAACCCTAACACAAACCCTAACCCAAACACACAATAATAATCATAATAATAATCATCGTCTTCTTCTTTCTTCCTTTCTCCAACTCCATGCATATCCCACTTCTACTATTTCATTCGTCCCCAAACCACCATCTGATGATGCAGCAGCAGCAGCAGCAGCGCATAGTAGTTGTTCCATTATTCATTATTATGACTTTCTCCAAGTAAATAGTACGGATTCTACGAATGGAAGTGAAGTGATAGATAACTCATCAAGAAAAGAGGATTATGAAGAGGTGAATAATAATAATAATAGTGGAGAACAACAGGCGGTACTACTTCCCTTCATTGATTTTTTTTCTGCCTCCAATAACGACACATCCATCTCATGATCCTCCTAAACACACACACATATATAACCAACCCAAAAAATTAAACCTCGAGCTGCTTTATATATATATTCTCACATTTCCTCTAACTCACTTGATGCATCATGGAAATCACAATACCCCGCCC

Coding sequence (CDS)

ATGTGCAGCAGAGGGCACTGGCGGCCTGCAGAAGACGAGAAGCTTCGAGAGCTGGTGGAGCGTTACGGACCTCATAACTGGAACGCCATAGCTCAAAAGCTTCAAGGAAGATCTGGGAAGAGCTGCCGCTTGAGATGCCCTTTCACCGAGGAGGAAGAAGAGAGGCTGATGGCGTCCCACAGGGTTCATGGCAACAGATGGGCCATCATCGCAAGGCTTTTCCCCGGCCGCACCGATAACGCAGTCAAGAACCACTGGCACGTCATCATGGCTCGTAGGTCTAGAAATAAATCCAAAACCCAAACCCTAACACAAACCCTAACCCAAACACACAATAATAATCATAATAATAATCATCGTCTTCTTCTTTCTTCCTTTCTCCAACTCCATGCATATCCCACTTCTACTATTTCATTCGTCCCCAAACCACCATCTGATGATGCAGCAGCAGCAGCAGCAGCGCATAGTAGTTGTTCCATTATTCATTATTATGACTTTCTCCAAGTAAATAGTACGGATTCTACGAATGGAAGTGAAGTGATAGATAACTCATCAAGAAAAGAGGATTATGAAGAGGTGAATAATAATAATAATAGTGGAGAACAACAGGCGGTACTACTTCCCTTCATTGATTTTTTTTCTGCCTCCAATAACGACACATCCATCTCATGA

Protein sequence

MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRCPFTEEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQTLTQTLTQTHNNNHNNNHRLLLSSFLQLHAYPTSTISFVPKPPSDDAAAAAAAHSSCSIIHYYDFLQVNSTDSTNGSEVIDNSSRKEDYEEVNNNNNSGEQQAVLLPFIDFFSASNNDTSIS

Homology

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BLAST of IVF0008347 vs. ExPASy Swiss-Prot
Match: Q6R0C4 (Transcription factor MYB52 OS=Arabidopsis thaliana OX=3702 GN=MYB52 PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.0e-49
Identity = 122/250 (48.80%), Postives = 150/250 (60.00%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRC-----------PFT 60
           MCSRGHWRPAEDEKLRELVE++GPHNWNAIAQKL GRSGKSCRLR            PFT
Sbjct: 2   MCSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFT 61

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQ-------- 120
           EEEEERL+ASHR+HGNRW++IAR FPGRTDNAVKNHWHVIMARR R +SK +        
Sbjct: 62  EEEEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGRERSKLRPRGLGHDG 121

Query: 121 TLTQTLTQTHNNNHNNNHRLL-------------LSSFLQLHAYPTSTISFVPKPPSDDA 180
           T+  T    +  + +   RL              ++ F  L  + T  I F     S   
Sbjct: 122 TVAATGMIGNYKDCDKERRLATTTAINFPYQFSHINHFQVLKEFLTGKIGF---RNSTTP 181

Query: 181 AAAAAAHSSCSIIHYYDFLQVNSTDSTNGSEVIDNSSRKEDYEEVNNNNNSGEQQAVLLP 219
               A   +   + +Y+FLQVN+    +  E+IDN SRK++ E+V+ NN    +  V  P
Sbjct: 182 IQEGAIDQTKRPMEFYNFLQVNTDSKIH--ELIDN-SRKDEEEDVDQNNRIPNENCV--P 241

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BLAST of IVF0008347 vs. ExPASy Swiss-Prot
Match: Q9FX36 (Transcription factor MYB54 OS=Arabidopsis thaliana OX=3702 GN=MYB54 PE=1 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.3e-49
Identity = 120/248 (48.39%), Postives = 153/248 (61.69%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRC-----------PFT 60
           MCSRGHWRPAEDEKL++LVE+YGPHNWNAIA KL GRSGKSCRLR            PFT
Sbjct: 3   MCSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPFT 62

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQTLTQTLTQ 120
           EEEEERL+A+HR+HGNRW+IIARLFPGRTDNAVKNHWHVIMARR+R  SK + L  T + 
Sbjct: 63  EEEEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARRTRQTSKPRLLPSTTSS 122

Query: 121 T----------------HNNNHNNNHRLLLSSFLQLHAYPTSTIS---FVPKPPSDDAAA 180
           +                HN + ++  ++  + F+    Y  S I+   F+ +  +   A 
Sbjct: 123 SSLMASEQIMMSSGGYNHNYSSDDRKKIFPADFINF-PYKFSHINHLHFLKEFFTGKIAL 182

Query: 181 AAAAHSSCSIIHYYDFLQVNSTDSTNGSEVIDNSSRKEDYEEVNNNNNSGEQQAVLLPFI 219
              A+ S   + +Y+FLQVN TDS N SE+ID  S +    + +  + S       +PF 
Sbjct: 183 NHKANQSKKPMEFYNFLQVN-TDS-NKSEIIDQDSGQSKRSDSDTKHESH------VPFF 241

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BLAST of IVF0008347 vs. ExPASy Swiss-Prot
Match: Q5NBM8 (Transcription factor CSA OS=Oryza sativa subsp. japonica OX=39947 GN=CSA PE=2 SV=2)

HSP 1 Score: 165.2 bits (417), Expect = 8.3e-40
Identity = 76/109 (69.72%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRC-----------PFT 60
           +C+RGHWRPAED KL++LV +YGP NWN IA+KL GRSGKSCRLR             FT
Sbjct: 46  LCARGHWRPAEDAKLKDLVAQYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFT 105

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKS 99
           EEEEERLMA+HR +GN+WA+IARLFPGRTDNAVKNHWHV+MARR R +S
Sbjct: 106 EEEEERLMAAHRAYGNKWALIARLFPGRTDNAVKNHWHVLMARRHREQS 154

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BLAST of IVF0008347 vs. ExPASy Swiss-Prot
Match: Q9LQX5 (Transcription factor MYB117 OS=Arabidopsis thaliana OX=3702 GN=MYB117 PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.7e-37
Identity = 82/142 (57.75%), Postives = 96/142 (67.61%), Query Frame = 0


Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRC-----------PFTEEE 63
           RGHWRPAED KL+ELV  YGP NWN IA+KLQGRSGKSCRLR             FTEEE
Sbjct: 98  RGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEE 157

Query: 64  EERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKS---------KTQTL 123
           EERLM +HR++GN+WA+IARLFPGRTDN+VKNHWHV+MAR+ R  S             L
Sbjct: 158 EERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVVMARKYREHSSAYRRRKLMSNNPL 217

Query: 124 TQTLTQTHNNNHNNNHRLLLSS 126
              LT  H+ N N N+   +S+
Sbjct: 218 KPHLTNNHHPNPNPNYHSFIST 239

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BLAST of IVF0008347 vs. ExPASy Swiss-Prot
Match: Q9SEZ4 (Transcription factor MYB105 OS=Arabidopsis thaliana OX=3702 GN=MYB105 PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.8e-37
Identity = 79/128 (61.72%), Postives = 93/128 (72.66%), Query Frame = 0


Query: 3   SRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRC-----------PFTEE 62
           SRGHWRPAED KL+ELV  YGP NWN IA+KLQGRSGKSCRLR             FTEE
Sbjct: 106 SRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEE 165

Query: 63  EEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQTLTQTLTQTH 120
           EEERLM +HR++GN+WA+IARLFPGRTDN+VKNHWHVIMAR+ R +S +    +T+    
Sbjct: 166 EEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQSSSYRRRKTMVSLK 225

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BLAST of IVF0008347 vs. ExPASy TrEMBL
Match: A0A1S3C1Q2 (transcriptional activator Myb-like OS=Cucumis melo OX=3656 GN=LOC103495663 PE=4 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 3.2e-119
Identity = 222/234 (94.87%), Postives = 222/234 (94.87%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRL-----------RCPFT 60
           MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRL           R PFT
Sbjct: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQTLTQTLTQ 120
           EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQTLTQTLTQ
Sbjct: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQTLTQTLTQ 120

Query: 121 THNNNHNNNHRLLLSSFLQLHAYPTSTISFVPKPPSDDAAAAAAAHSSCSIIHYYDFLQV 180
           THNNNHNNNHRLLLSSFLQLHAYPTSTISFVPKPPSDDAAAAAAAHSSCSIIHYYDFLQV
Sbjct: 121 THNNNHNNNHRLLLSSFLQLHAYPTSTISFVPKPPSDDAAAAAAAHSSCSIIHYYDFLQV 180

Query: 181 NSTDSTNGSEVIDNSSRKEDYEEVNNNNNSGEQQAVLLPFIDFFSASNNDTSIS 224
           NSTDSTNGSEVIDNSSRKEDYEEVNNNNNSGEQQAVLLPFIDFFSASNNDTSIS
Sbjct: 181 NSTDSTNGSEVIDNSSRKEDYEEVNNNNNSGEQQAVLLPFIDFFSASNNDTSIS 234

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BLAST of IVF0008347 vs. ExPASy TrEMBL
Match: A0A0A0LPV0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G029570 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 2.4e-111
Identity = 213/234 (91.03%), Postives = 217/234 (92.74%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRL-----------RCPFT 60
           MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRL           R PFT
Sbjct: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQTLTQTLTQ 120
           EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQTLTQTLTQ
Sbjct: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQTLTQTLTQ 120

Query: 121 THNNNHNNNHRLLLSSFLQLHAYPTSTISFVPKPPSDDAAAAAAAHSSCSIIHYYDFLQV 180
           THNNN NNN+RLLLSSFLQLHAYPTS ISF+PKPP DDAAAAAAAHSSCSIIHYYDFLQV
Sbjct: 121 THNNN-NNNNRLLLSSFLQLHAYPTSNISFIPKPPPDDAAAAAAAHSSCSIIHYYDFLQV 180

Query: 181 NSTDSTNGSEVIDNSSRKEDYEEVNNNNNSGEQQAVLLPFIDFFSASNNDTSIS 224
           NSTDS NGSEVIDNSSRKEDYEEVNNNNN GEQQAVLLPFIDFFSAS+N+TSIS
Sbjct: 181 NSTDSMNGSEVIDNSSRKEDYEEVNNNNN-GEQQAVLLPFIDFFSASSNNTSIS 232

[Close]

BLAST of IVF0008347 vs. ExPASy TrEMBL
Match: A0A6J1KP91 (transcription factor MYB52-like OS=Cucurbita maxima OX=3661 GN=LOC111495269 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 6.1e-62
Identity = 143/248 (57.66%), Postives = 165/248 (66.53%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRL-----------RCPFT 60
           MCSRGHWRPAED+KLRELVERYGPHNWNAIAQKLQGRSGKSCRL           R PFT
Sbjct: 1   MCSRGHWRPAEDDKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRN----KSKTQTLTQ 120
           EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMAR+SR+    K+K +   +
Sbjct: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARKSRDSSKAKAKAKAKAK 120

Query: 121 TLTQTHNNNHNNNHRLLLSSFLQLHA-------------YPTSTISFVPKPPSDDAAAAA 180
            +T+T   + ++   LLLSSFLQ                YP    SF+PKP         
Sbjct: 121 AITKTQTLSPSSQSHLLLSSFLQTSCPPNNASLFLNHSLYPNPISSFIPKPTDRS----- 180

Query: 181 AAHSSCSIIHYYDFLQVNSTDSTNGSEVIDNSSRKEDYEEVNNNNNSGEQQAVLLPFIDF 221
                   + +YDFL +N+ +S N SEVIDN SRKEDYEEVN    +   +  L PFIDF
Sbjct: 181 --------VEFYDFLHLNA-ESINASEVIDN-SRKEDYEEVNQEATATAARP-LFPFIDF 232

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BLAST of IVF0008347 vs. ExPASy TrEMBL
Match: A0A6J1EDT2 (transcription factor MYB52-like OS=Cucurbita moschata OX=3662 GN=LOC111431625 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 4.0e-61
Identity = 140/245 (57.14%), Postives = 160/245 (65.31%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRL-----------RCPFT 60
           MCSRGHWRPAED+KLRELVERYGPHNWNAIAQKL GRSGKSCRL           R PFT
Sbjct: 1   MCSRGHWRPAEDDKLRELVERYGPHNWNAIAQKLLGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQTLTQTLTQ 120
           EEEEERLM SHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMAR+SR+ SK +   +  T+
Sbjct: 61  EEEEERLMTSHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARKSRDSSKAKAKAKAKTK 120

Query: 121 THNNNHNNNHRLLLSSFLQLHA--------------YPTSTISFVPKPPSDDAAAAAAAH 180
           T     ++ + LL SSFLQ                 YP    SF+PKP            
Sbjct: 121 TKTLTPSSQNHLLFSSFLQTSCPPNNNASLFLNHSLYPNPISSFIPKPTDRS-------- 180

Query: 181 SSCSIIHYYDFLQVNSTDSTNGSEVIDNSSRKEDYEEVNNNNNSGEQQAVLLPFIDFFSA 221
                + +YDFL +N+ +S N SEVIDN SRKEDYEEVN    +   +  L PFIDFFSA
Sbjct: 181 -----VEFYDFLHLNA-ESINASEVIDN-SRKEDYEEVNQEATATAARP-LFPFIDFFSA 229

[Close]

BLAST of IVF0008347 vs. ExPASy TrEMBL
Match: A0A6P3ZUN5 (transcription factor MYB52-like OS=Ziziphus jujuba OX=326968 GN=LOC107419653 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.8e-53
Identity = 133/256 (51.95%), Postives = 160/256 (62.50%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRC-----------PFT 60
           MC+RGHWRPAEDEKL+ELVERYGPHNWNAIA+KLQGRSGKSCRLR            PFT
Sbjct: 1   MCTRGHWRPAEDEKLKELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRNPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSK--TQTLTQTL 120
           EEEEERL+ASHR+HGNRWAIIARLFPGRTDNAVKNHWHVIMARR R +S+   +  +Q L
Sbjct: 61  EEEEERLLASHRIHGNRWAIIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRASQKL 120

Query: 121 TQTHNNN------------HNNNHRLLLSSFLQLH----AYPTSTISFVPKPPSDDAAAA 180
             T+                N   +   +SF++ +     YP  +   +PK  +      
Sbjct: 121 GSTNERKSCLKQAEDVQMVSNCEIKSSFASFIENYRERCKYPFHSTFPLPKQSN------ 180

Query: 181 AAAHSSCSIIH--------YYDFLQVNSTDSTNGSEVIDNSSRKED-YEEVNNNNNSGEQ 219
               S C  IH        +YDFLQVN+   +NGSEVIDN+SRK+D  EEVN      +Q
Sbjct: 181 LLNSSPCFTIHEENSQPKEFYDFLQVNT--ESNGSEVIDNNSRKDDEQEEVNQKEVMEQQ 240

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BLAST of IVF0008347 vs. NCBI nr
Match: XP_008455801.1 (PREDICTED: transcriptional activator Myb-like [Cucumis melo])

HSP 1 Score: 437 bits (1125), Expect = 1.82e-154
Identity = 222/234 (94.87%), Postives = 222/234 (94.87%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLR-----------CPFT 60
           MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLR            PFT
Sbjct: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQTLTQTLTQ 120
           EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQTLTQTLTQ
Sbjct: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQTLTQTLTQ 120

Query: 121 THNNNHNNNHRLLLSSFLQLHAYPTSTISFVPKPPSDDAAAAAAAHSSCSIIHYYDFLQV 180
           THNNNHNNNHRLLLSSFLQLHAYPTSTISFVPKPPSDDAAAAAAAHSSCSIIHYYDFLQV
Sbjct: 121 THNNNHNNNHRLLLSSFLQLHAYPTSTISFVPKPPSDDAAAAAAAHSSCSIIHYYDFLQV 180

Query: 181 NSTDSTNGSEVIDNSSRKEDYEEVNNNNNSGEQQAVLLPFIDFFSASNNDTSIS 223
           NSTDSTNGSEVIDNSSRKEDYEEVNNNNNSGEQQAVLLPFIDFFSASNNDTSIS
Sbjct: 181 NSTDSTNGSEVIDNSSRKEDYEEVNNNNNSGEQQAVLLPFIDFFSASNNDTSIS 234

[Close]

BLAST of IVF0008347 vs. NCBI nr
Match: XP_011649446.1 (transcription factor MYB52 [Cucumis sativus] >KGN63930.1 hypothetical protein Csa_013427 [Cucumis sativus])

HSP 1 Score: 411 bits (1056), Expect = 5.59e-144
Identity = 213/234 (91.03%), Postives = 217/234 (92.74%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLR-----------CPFT 60
           MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLR            PFT
Sbjct: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQTLTQTLTQ 120
           EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQTLTQTLTQ
Sbjct: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQTLTQTLTQ 120

Query: 121 THNNNHNNNHRLLLSSFLQLHAYPTSTISFVPKPPSDDAAAAAAAHSSCSIIHYYDFLQV 180
           THNNN+NNN RLLLSSFLQLHAYPTS ISF+PKPP DDAAAAAAAHSSCSIIHYYDFLQV
Sbjct: 121 THNNNNNNN-RLLLSSFLQLHAYPTSNISFIPKPPPDDAAAAAAAHSSCSIIHYYDFLQV 180

Query: 181 NSTDSTNGSEVIDNSSRKEDYEEVNNNNNSGEQQAVLLPFIDFFSASNNDTSIS 223
           NSTDS NGSEVIDNSSRKEDYEEVNNNNN GEQQAVLLPFIDFFSAS+N+TSIS
Sbjct: 181 NSTDSMNGSEVIDNSSRKEDYEEVNNNNN-GEQQAVLLPFIDFFSASSNNTSIS 232

[Close]

BLAST of IVF0008347 vs. NCBI nr
Match: XP_038895550.1 (transcription factor MYB54-like [Benincasa hispida])

HSP 1 Score: 314 bits (804), Expect = 1.35e-105
Identity = 174/237 (73.42%), Postives = 187/237 (78.90%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLR-----------CPFT 60
           MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLR            PFT
Sbjct: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQTLTQTLTQ 120
           EEEEERLMASHR+HGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQT T + + 
Sbjct: 61  EEEEERLMASHRLHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQTQTPSNSL 120

Query: 121 THNNN-----HNNNHRLLLSSFLQLHAYPTSTISFVPKPPSDDAAAAAAAHSSCSIIHYY 180
            H+NN     H+N++RLLLSSFLQLH  PTS   F+PKPPS DAA   A+      +HYY
Sbjct: 121 HHHNNNHHHHHHNHNRLLLSSFLQLHTCPTSNSLFIPKPPSVDAARTNAS------VHYY 180

Query: 181 DFLQVNSTDSTNGSEVIDNSSRKEDYEEVNNNNNSGEQQAVLLPFIDFFSASNNDTS 221
           DFL VN T+S NGSEVIDNS RKEDYEEVNN    GE Q+VL PFIDFFSAS   T+
Sbjct: 181 DFLNVN-TESINGSEVIDNS-RKEDYEEVNN----GEHQSVL-PFIDFFSASQTSTN 224

[Close]

BLAST of IVF0008347 vs. NCBI nr
Match: XP_023001003.1 (transcription factor MYB52-like [Cucurbita maxima])

HSP 1 Score: 246 bits (629), Expect = 6.53e-79
Identity = 143/248 (57.66%), Postives = 165/248 (66.53%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLR-----------CPFT 60
           MCSRGHWRPAED+KLRELVERYGPHNWNAIAQKLQGRSGKSCRLR            PFT
Sbjct: 1   MCSRGHWRPAEDDKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRN----KSKTQTLTQ 120
           EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMAR+SR+    K+K +   +
Sbjct: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARKSRDSSKAKAKAKAKAK 120

Query: 121 TLTQTHNNNHNNNHRLLLSSFLQLHA-------------YPTSTISFVPKPPSDDAAAAA 180
            +T+T   + ++   LLLSSFLQ                YP    SF+PKP         
Sbjct: 121 AITKTQTLSPSSQSHLLLSSFLQTSCPPNNASLFLNHSLYPNPISSFIPKPTDRS----- 180

Query: 181 AAHSSCSIIHYYDFLQVNSTDSTNGSEVIDNSSRKEDYEEVNNNNNSGEQQAVLLPFIDF 220
                   + +YDFL +N+ +S N SEVIDNS RKEDYEEVN    +   +  L PFIDF
Sbjct: 181 --------VEFYDFLHLNA-ESINASEVIDNS-RKEDYEEVNQEATATAARP-LFPFIDF 232

[Close]

BLAST of IVF0008347 vs. NCBI nr
Match: XP_022924085.1 (transcription factor MYB52-like [Cucurbita moschata] >KAG6584475.1 Transcription factor MYB52, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020062.1 Transcription factor MYB52 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 244 bits (622), Expect = 6.83e-78
Identity = 140/245 (57.14%), Postives = 160/245 (65.31%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLR-----------CPFT 60
           MCSRGHWRPAED+KLRELVERYGPHNWNAIAQKL GRSGKSCRLR            PFT
Sbjct: 1   MCSRGHWRPAEDDKLRELVERYGPHNWNAIAQKLLGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQTLTQTLTQ 120
           EEEEERLM SHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMAR+SR+ SK +   +  T+
Sbjct: 61  EEEEERLMTSHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARKSRDSSKAKAKAKAKTK 120

Query: 121 THNNNHNNNHRLLLSSFLQLHA--------------YPTSTISFVPKPPSDDAAAAAAAH 180
           T     ++ + LL SSFLQ                 YP    SF+PKP            
Sbjct: 121 TKTLTPSSQNHLLFSSFLQTSCPPNNNASLFLNHSLYPNPISSFIPKPTDRS-------- 180

Query: 181 SSCSIIHYYDFLQVNSTDSTNGSEVIDNSSRKEDYEEVNNNNNSGEQQAVLLPFIDFFSA 220
                + +YDFL +N+ +S N SEVIDNS RKEDYEEVN    +   +  L PFIDFFSA
Sbjct: 181 -----VEFYDFLHLNA-ESINASEVIDNS-RKEDYEEVNQEATATAARP-LFPFIDFFSA 229

[Close]

BLAST of IVF0008347 vs. TAIR 10
Match: AT1G17950.1 (myb domain protein 52 )

HSP 1 Score: 197.2 bits (500), Expect = 1.4e-50
Identity = 122/250 (48.80%), Postives = 150/250 (60.00%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRC-----------PFT 60
           MCSRGHWRPAEDEKLRELVE++GPHNWNAIAQKL GRSGKSCRLR            PFT
Sbjct: 2   MCSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFT 61

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQ-------- 120
           EEEEERL+ASHR+HGNRW++IAR FPGRTDNAVKNHWHVIMARR R +SK +        
Sbjct: 62  EEEEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGRERSKLRPRGLGHDG 121

Query: 121 TLTQTLTQTHNNNHNNNHRLL-------------LSSFLQLHAYPTSTISFVPKPPSDDA 180
           T+  T    +  + +   RL              ++ F  L  + T  I F     S   
Sbjct: 122 TVAATGMIGNYKDCDKERRLATTTAINFPYQFSHINHFQVLKEFLTGKIGF---RNSTTP 181

Query: 181 AAAAAAHSSCSIIHYYDFLQVNSTDSTNGSEVIDNSSRKEDYEEVNNNNNSGEQQAVLLP 219
               A   +   + +Y+FLQVN+    +  E+IDN SRK++ E+V+ NN    +  V  P
Sbjct: 182 IQEGAIDQTKRPMEFYNFLQVNTDSKIH--ELIDN-SRKDEEEDVDQNNRIPNENCV--P 241

[Close]

BLAST of IVF0008347 vs. TAIR 10
Match: AT1G73410.1 (myb domain protein 54 )

HSP 1 Score: 196.4 bits (498), Expect = 2.4e-50
Identity = 120/248 (48.39%), Postives = 153/248 (61.69%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRC-----------PFT 60
           MCSRGHWRPAEDEKL++LVE+YGPHNWNAIA KL GRSGKSCRLR            PFT
Sbjct: 3   MCSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPFT 62

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQTLTQTLTQ 120
           EEEEERL+A+HR+HGNRW+IIARLFPGRTDNAVKNHWHVIMARR+R  SK + L  T + 
Sbjct: 63  EEEEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARRTRQTSKPRLLPSTTSS 122

Query: 121 T----------------HNNNHNNNHRLLLSSFLQLHAYPTSTIS---FVPKPPSDDAAA 180
           +                HN + ++  ++  + F+    Y  S I+   F+ +  +   A 
Sbjct: 123 SSLMASEQIMMSSGGYNHNYSSDDRKKIFPADFINF-PYKFSHINHLHFLKEFFTGKIAL 182

Query: 181 AAAAHSSCSIIHYYDFLQVNSTDSTNGSEVIDNSSRKEDYEEVNNNNNSGEQQAVLLPFI 219
              A+ S   + +Y+FLQVN TDS N SE+ID  S +    + +  + S       +PF 
Sbjct: 183 NHKANQSKKPMEFYNFLQVN-TDS-NKSEIIDQDSGQSKRSDSDTKHESH------VPFF 241

[Close]

BLAST of IVF0008347 vs. TAIR 10
Match: AT4G33450.1 (myb domain protein 69 )

HSP 1 Score: 161.8 bits (408), Expect = 6.5e-40
Identity = 80/120 (66.67%), Postives = 90/120 (75.00%), Query Frame = 0


Query: 2   CSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRC-----------PFTE 61
           C RGHWRP ED+ LR+LVE+YGP NWN IAQ L GRSGKSCRLR            PFTE
Sbjct: 17  CQRGHWRPVEDDNLRQLVEQYGPKNWNFIAQHLYGRSGKSCRLRWYNQLDPNITKKPFTE 76

Query: 62  EEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQTLTQTLTQT 111
           EEEERL+ +HR+ GNRWA IARLFPGRTDNAVKNH+HVIMARR R ++ + T T T  QT
Sbjct: 77  EEEERLLKAHRIQGNRWASIARLFPGRTDNAVKNHFHVIMARRKR-ENFSSTATSTFNQT 135

[Close]

BLAST of IVF0008347 vs. TAIR 10
Match: AT1G26780.1 (myb domain protein 117 )

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-38
Identity = 82/142 (57.75%), Postives = 96/142 (67.61%), Query Frame = 0


Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRC-----------PFTEEE 63
           RGHWRPAED KL+ELV  YGP NWN IA+KLQGRSGKSCRLR             FTEEE
Sbjct: 98  RGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEE 157

Query: 64  EERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKS---------KTQTL 123
           EERLM +HR++GN+WA+IARLFPGRTDN+VKNHWHV+MAR+ R  S             L
Sbjct: 158 EERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVVMARKYREHSSAYRRRKLMSNNPL 217

Query: 124 TQTLTQTHNNNHNNNHRLLLSS 126
              LT  H+ N N N+   +S+
Sbjct: 218 KPHLTNNHHPNPNPNYHSFIST 239

[Close]

BLAST of IVF0008347 vs. TAIR 10
Match: AT1G26780.2 (myb domain protein 117 )

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-38
Identity = 82/142 (57.75%), Postives = 96/142 (67.61%), Query Frame = 0


Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRC-----------PFTEEE 63
           RGHWRPAED KL+ELV  YGP NWN IA+KLQGRSGKSCRLR             FTEEE
Sbjct: 98  RGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEE 157

Query: 64  EERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKS---------KTQTL 123
           EERLM +HR++GN+WA+IARLFPGRTDN+VKNHWHV+MAR+ R  S             L
Sbjct: 158 EERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVVMARKYREHSSAYRRRKLMSNNPL 217

Query: 124 TQTLTQTHNNNHNNNHRLLLSS 126
              LT  H+ N N N+   +S+
Sbjct: 218 KPHLTNNHHPNPNPNYHSFIST 239

The following BLAST results are available for this feature:

BLAST of IVF0008347 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6R0C4	2.0e-49	48.80	Transcription factor MYB52 OS=Arabidopsis thaliana OX=3702 GN=MYB52 PE=2 SV=1	[more]
Q9FX36	3.3e-49	48.39	Transcription factor MYB54 OS=Arabidopsis thaliana OX=3702 GN=MYB54 PE=1 SV=1	[more]
Q5NBM8	8.3e-40	69.72	Transcription factor CSA OS=Oryza sativa subsp. japonica OX=39947 GN=CSA PE=2 SV...	[more]
Q9LQX5	1.7e-37	57.75	Transcription factor MYB117 OS=Arabidopsis thaliana OX=3702 GN=MYB117 PE=2 SV=1	[more]
Q9SEZ4	3.8e-37	61.72	Transcription factor MYB105 OS=Arabidopsis thaliana OX=3702 GN=MYB105 PE=1 SV=1	[more]

BLAST of IVF0008347 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C1Q2	3.2e-119	94.87	transcriptional activator Myb-like OS=Cucumis melo OX=3656 GN=LOC103495663 PE=4 ...	[more]
A0A0A0LPV0	2.4e-111	91.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G029570 PE=4 SV=1	[more]
A0A6J1KP91	6.1e-62	57.66	transcription factor MYB52-like OS=Cucurbita maxima OX=3661 GN=LOC111495269 PE=4...	[more]
A0A6J1EDT2	4.0e-61	57.14	transcription factor MYB52-like OS=Cucurbita moschata OX=3662 GN=LOC111431625 PE...	[more]
A0A6P3ZUN5	1.8e-53	51.95	transcription factor MYB52-like OS=Ziziphus jujuba OX=326968 GN=LOC107419653 PE=...	[more]

BLAST of IVF0008347 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455801.1	1.82e-154	94.87	PREDICTED: transcriptional activator Myb-like [Cucumis melo]	[more]
XP_011649446.1	5.59e-144	91.03	transcription factor MYB52 [Cucumis sativus] >KGN63930.1 hypothetical protein Cs...	[more]
XP_038895550.1	1.35e-105	73.42	transcription factor MYB54-like [Benincasa hispida]	[more]
XP_023001003.1	6.53e-79	57.66	transcription factor MYB52-like [Cucurbita maxima]	[more]
XP_022924085.1	6.83e-78	57.14	transcription factor MYB52-like [Cucurbita moschata] >KAG6584475.1 Transcription...	[more]

BLAST of IVF0008347 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G17950.1	1.4e-50	48.80	myb domain protein 52	[more]
AT1G73410.1	2.4e-50	48.39	myb domain protein 54	[more]
AT4G33450.1	6.5e-40	66.67	myb domain protein 69	[more]
AT1G26780.1	1.2e-38	57.75	myb domain protein 117	[more]
AT1G26780.2	1.2e-38	57.75	myb domain protein 117	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 3..43 e-value: 1.1E-4 score: 31.6 coord: 44..92 e-value: 1.0E-12 score: 58.2
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 1..45 score: 9.430676
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 47..90 score: 8.606196
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 7..46 e-value: 9.07318E-13 score: 58.741
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 47..87 e-value: 5.81182E-11 score: 54.1186
None	No IPR available	GENE3D	1.10.10.60		coord: 4..46 e-value: 8.2E-18 score: 66.1
None	No IPR available	GENE3D	1.10.10.60		coord: 47..122 e-value: 4.0E-19 score: 70.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..197
None	No IPR available	PANTHER	PTHR45614:SF111	MYB-RELATED PROTEIN A-LIKE	coord: 1..215
None	No IPR available	PANTHER	PTHR45614	MYB PROTEIN-RELATED	coord: 1..215
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 4..45 e-value: 6.8E-14 score: 51.8 coord: 46..88 e-value: 1.7E-13 score: 50.5
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 1..43 score: 17.871721
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 45..94 score: 22.781132
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 4..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0008347.2	IVF0008347.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding