IVF0008292 (gene) Melon (IVF77) v1

Overview


Name	IVF0008292
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr10: 13022525 .. 13022785 (-)
RNA-Seq Expression	IVF0008292
Synteny	IVF0008292

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAGAAAAGAGTGGGGCGATACAAAGAGAAACGGGTAAGCCAAGATTATATCGCTTGAAGGTAGACAACGCGGTAAGAGTAACTCGGGAAGAAGGTATTACCTTAGGCGCCAAGAGCAACGCATTTGACATGATATTGCGAGAAGAAGTATACACTCCCAAGAAATTGAGGCGAGAAAGTAAATGTCTTGTAAAGCGACATGACAACTCACATGGAGAAGGAAACAACAGTGACTTTTCGGGAAGAGAAAACGGATAG

mRNA sequence

ATGCGAGAAAAGAGTGGGGCGATACAAAGAGAAACGGGTAAGCCAAGATTATATCGCTTGAAGGTAGACAACGCGGTAAGAGTAACTCGGGAAGAAGGTATTACCTTAGGCGCCAAGAGCAACGCATTTGACATGATATTGCGAGAAGAAGTATACACTCCCAAGAAATTGAGGCGAGAAAGTAAATGTCTTGTAAAGCGACATGACAACTCACATGGAGAAGGAAACAACAGTGACTTTTCGGGAAGAGAAAACGGATAG

Coding sequence (CDS)

ATGCGAGAAAAGAGTGGGGCGATACAAAGAGAAACGGGTAAGCCAAGATTATATCGCTTGAAGGTAGACAACGCGGTAAGAGTAACTCGGGAAGAAGGTATTACCTTAGGCGCCAAGAGCAACGCATTTGACATGATATTGCGAGAAGAAGTATACACTCCCAAGAAATTGAGGCGAGAAAGTAAATGTCTTGTAAAGCGACATGACAACTCACATGGAGAAGGAAACAACAGTGACTTTTCGGGAAGAGAAAACGGATAG

Protein sequence

MREKSGAIQRETGKPRLYRLKVDNAVRVTREEGITLGAKSNAFDMILREEVYTPKKLRRESKCLVKRHDNSHGEGNNSDFSGRENG

Homology

[Close]

BLAST of IVF0008292 vs. ExPASy TrEMBL
Match: A0A5A7TZA6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G00970 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.2e-07
Identity = 41/95 (43.16%), Postives = 54/95 (56.84%), Query Frame = 0


Query: 1  MREKSGAIQRETGKPRLYRLKVDNAVRVTREEGITLGAKSNAFDMILREEVYTPKKLRR- 60
          M+++SG  +RE  +PR Y +KV N +RV  E+GI L AKS AF  IL EEVYTPK+LR  
Sbjct: 1  MQQESGVTRRERHRPRFYYVKVGNVIRVIGEKGIALSAKSEAFGRILPEEVYTPKRLRSL 60

Query: 61 --ESKCLVKRHDNSH-------GEGNNSDFSGREN 86
            + K   KR   S+       G  +   F G+ N
Sbjct: 61 RLKWKSFAKREKKSYSYSLGVRGAISREQFDGKGN 95

[Close]

BLAST of IVF0008292 vs. NCBI nr
Match: KAA0046569.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 2.31e-10
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 1  MREKSGAIQRETGKPRLYRLKVDNAVRVTREEGITLGAKSNAFDMILREEVYTPKKLR 58
          M+++SG  +RE  +PR Y +KV N +RV  E+GI L AKS AF  IL EEVYTPK+LR
Sbjct: 1  MQQESGVTRRERHRPRFYYVKVGNVIRVIGEKGIALSAKSEAFGRILPEEVYTPKRLR 58

The following BLAST results are available for this feature:

BLAST of IVF0008292 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0008292 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZA6	2.2e-07	43.16	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of IVF0008292 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046569.1	2.31e-10	56.90	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0008292 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0008292.1	IVF0008292.1	mRNA