IVF0008261 (gene) Melon (IVF77) v1

Overview
NameIVF0008261
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr02: 8299499 .. 8299840 (+)
RNA-Seq ExpressionIVF0008261
SyntenyIVF0008261
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGACTATTGATGACCCACTCCAAAGGGAAAAGGAACAACTCCCAGAGGATGTTGGCGAGAAAAGTCTCCCCTCACCACCTACATAATTTTCAAAAGTCGCAACGCTGTTAGAAAAACTAAAATAGGCAACGAGAAAAGAAGAAGAAGTTGACACGGACTATGTGTTCAAATTCATGGATGAATTTATTTGTAAACCTTTGGAGAGAGGGTTTGAAGACATGTTTCAGTGTCAGAGAAACTTACAAGAGATGCAATTGCAGGATCAAAAGCCAGTAAGCGACTTAGAACTTAAAATTGACAACGCGAGTGCAAGAAATCAAACACAAATGGATTAA

mRNA sequence

ATGGAGGAGACTATTGATGACCCACTCCAAAGGGAAAAGGAACAACTCCCAGAGGATGTTGGCGAGAAAAAAGAAGAAGTTGACACGGACTATGTGTTCAAATTCATGGATGAATTTATTTGTAAACCTTTGGAGAGAGGGTTTGAAGACATGTTTCAGTGTCAGAGAAACTTACAAGAGATGCAATTGCAGGATCAAAAGCCAGTAAGCGACTTAGAACTTAAAATTGACAACGCGAGTGCAAGAAATCAAACACAAATGGATTAA

Coding sequence (CDS)

ATGGAGGAGACTATTGATGACCCACTCCAAAGGGAAAAGGAACAACTCCCAGAGGATGTTGGCGAGAAAAAAGAAGAAGTTGACACGGACTATGTGTTCAAATTCATGGATGAATTTATTTGTAAACCTTTGGAGAGAGGGTTTGAAGACATGTTTCAGTGTCAGAGAAACTTACAAGAGATGCAATTGCAGGATCAAAAGCCAGTAAGCGACTTAGAACTTAAAATTGACAACGCGAGTGCAAGAAATCAAACACAAATGGATTAA

Protein sequence

MEETIDDPLQREKEQLPEDVGEKKEEVDTDYVFKFMDEFICKPLERGFEDMFQCQRNLQEMQLQDQKPVSDLELKIDNASARNQTQMD
Homology
BLAST of IVF0008261 vs. ExPASy TrEMBL
Match: A0A5D3D645 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold368G00010 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.1e-20
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 0

Query: 22 EKKEEVDTDYVFKFMDEFICKPLERGFEDMFQCQRNLQEMQLQDQKPVSDLELKIDNASA 81
          +++EEVD  YVFKF+D+FICKPLERGFED FQCQ NLQEMQL+ QK VSDLELKIDNASA
Sbjct: 2  KEEEEVDAYYVFKFIDKFICKPLERGFEDTFQCQSNLQEMQLRSQKQVSDLELKIDNASA 61

Query: 82 RNQTQMD 89
           NQ QMD
Sbjct: 62 SNQAQMD 68

BLAST of IVF0008261 vs. ExPASy TrEMBL
Match: A0A5A7V5X0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001410 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.4e-16
Identity = 51/88 (57.95%), Postives = 58/88 (65.91%), Query Frame = 0

Query: 1   MEETIDDPLQREKEQLPEDVGEK-------------------------KEEVDTDYVFKF 60
           ++E +DDPLQ EKE+LPEDV EK                         +EEVD +YVFKF
Sbjct: 114 LKEIVDDPLQGEKEELPEDVSEKSLPSPPKPILEVVVRLEKLKEAMKEEEEVDANYVFKF 173

Query: 61  MDEFICKPLERGFEDMFQCQRNLQEMQL 64
           MDEFICKPLERGFED+FQCQ NLQEMQL
Sbjct: 174 MDEFICKPLERGFEDIFQCQSNLQEMQL 201

BLAST of IVF0008261 vs. ExPASy TrEMBL
Match: A0A5D3CJ32 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G001300 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 8.4e-15
Identity = 48/86 (55.81%), Postives = 57/86 (66.28%), Query Frame = 0

Query: 1  MEETIDDPLQREKEQLPEDVGEK-------------------------KEEVDTDYVFKF 60
          M+ETIDDPLQREKE++PEDVGEK                         +EEV  DYVF F
Sbjct: 1  MKETIDDPLQREKEEVPEDVGEKSLPSSGKSIPEASTQLDKLKEAVREEEEVSADYVFMF 60

Query: 61 MDEFICKPLERGFEDMFQCQRNLQEM 62
          +DE+ICKPLERGF+D+FQC+ NLQEM
Sbjct: 61 IDEYICKPLERGFKDIFQCKSNLQEM 86

BLAST of IVF0008261 vs. ExPASy TrEMBL
Match: A0A5D3BE51 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold369G00020 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.2e-14
Identity = 49/91 (53.85%), Postives = 58/91 (63.74%), Query Frame = 0

Query: 1   MEETIDDPLQREKEQLPEDVGEK-------------------------KEEVDTDYVFKF 60
           ++E +DDPLQ EKE+LPEDV EK                         +EEVD +YVFKF
Sbjct: 129 LKEIVDDPLQGEKEELPEDVSEKSLPSPPKPILEVVVRLEKLKEAMKEEEEVDPNYVFKF 188

Query: 61  MDEFICKPLERGFEDMFQCQRNLQEMQLQDQ 67
           MDEFICK LERGFED+FQCQ NLQEMQ + +
Sbjct: 189 MDEFICKLLERGFEDIFQCQSNLQEMQFRSK 219

BLAST of IVF0008261 vs. ExPASy TrEMBL
Match: A0A5D3DG66 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00070 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 40/68 (58.82%), Postives = 53/68 (77.94%), Query Frame = 0

Query: 18  EDVGEKKEEVDTDYVFKFMDEFICKPLERGFEDMFQCQRNLQEMQLQDQKPVSDLELKID 77
           E V E +EE   DYVFKF+D ++CK +ERGFE++ QCQR LQEM L+  K ++DLELK+D
Sbjct: 129 EMVIEYEEEYYEDYVFKFLDHYVCKLMERGFENVIQCQRTLQEMHLRSHKQLNDLELKVD 188

Query: 78  NASARNQT 86
           NA+A +QT
Sbjct: 189 NANAHHQT 196

BLAST of IVF0008261 vs. NCBI nr
Match: KAA0049656.1 (hypothetical protein E6C27_scaffold163G001250 [Cucumis melo var. makuwa] >TYK19034.1 hypothetical protein E5676_scaffold368G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (262), Expect = 2.58e-27
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 0

Query: 23 KKEEVDTDYVFKFMDEFICKPLERGFEDMFQCQRNLQEMQLQDQKPVSDLELKIDNASAR 82
          ++EEVD  YVFKF+D+FICKPLERGFED FQCQ NLQEMQL+ QK VSDLELKIDNASA 
Sbjct: 3  EEEEVDAYYVFKFIDKFICKPLERGFEDTFQCQSNLQEMQLRSQKQVSDLELKIDNASAS 62

Query: 83 NQTQMD 88
          NQ QMD
Sbjct: 63 NQAQMD 68

BLAST of IVF0008261 vs. NCBI nr
Match: KAA0062630.1 (hypothetical protein E6C27_scaffold79G001410 [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 2.79e-21
Identity = 51/88 (57.95%), Postives = 58/88 (65.91%), Query Frame = 0

Query: 1   MEETIDDPLQREKEQLPEDVGEK-------------------------KEEVDTDYVFKF 60
           ++E +DDPLQ EKE+LPEDV EK                         +EEVD +YVFKF
Sbjct: 114 LKEIVDDPLQGEKEELPEDVSEKSLPSPPKPILEVVVRLEKLKEAMKEEEEVDANYVFKF 173

Query: 61  MDEFICKPLERGFEDMFQCQRNLQEMQL 63
           MDEFICKPLERGFED+FQCQ NLQEMQL
Sbjct: 174 MDEFICKPLERGFEDIFQCQSNLQEMQL 201

BLAST of IVF0008261 vs. NCBI nr
Match: TYK11947.1 (hypothetical protein E5676_scaffold177G001300 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 4.69e-21
Identity = 48/86 (55.81%), Postives = 57/86 (66.28%), Query Frame = 0

Query: 1  MEETIDDPLQREKEQLPEDVGEK-------------------------KEEVDTDYVFKF 60
          M+ETIDDPLQREKE++PEDVGEK                         +EEV  DYVF F
Sbjct: 1  MKETIDDPLQREKEEVPEDVGEKSLPSSGKSIPEASTQLDKLKEAVREEEEVSADYVFMF 60

BLAST of IVF0008261 vs. NCBI nr
Match: KAE8646246.1 (hypothetical protein Csa_023826, partial [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 1.61e-19
Identity = 50/107 (46.73%), Postives = 63/107 (58.88%), Query Frame = 0

Query: 1   MEETIDDPLQREKEQLPEDVGE---------------------------KKEEVDTDYVF 60
           +EE IDDPLQ+EKE + ++VGE                             E VD DY+F
Sbjct: 12  LEELIDDPLQKEKETVSKEVGETHLPSLPIKIVEAAVQNDKSKEALKEKNHEVVDKDYIF 71

Query: 61  KFMDEFICKPLERGFEDMFQCQRNLQEMQLQDQKPVSDLELKIDNAS 80
            F++  +CKP+E GFEDM Q Q NLQEMQL  QK +SDLELK+DNA+
Sbjct: 72  YFINHHVCKPMENGFEDMIQWQSNLQEMQLWSQKQLSDLELKVDNAN 118

BLAST of IVF0008261 vs. NCBI nr
Match: TYJ98052.1 (hypothetical protein E5676_scaffold369G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 1.40e-18
Identity = 49/87 (56.32%), Postives = 56/87 (64.37%), Query Frame = 0

Query: 1   MEETIDDPLQREKEQLPEDVGEK-------------------------KEEVDTDYVFKF 60
           ++E +DDPLQ EKE+LPEDV EK                         +EEVD +YVFKF
Sbjct: 129 LKEIVDDPLQGEKEELPEDVSEKSLPSPPKPILEVVVRLEKLKEAMKEEEEVDPNYVFKF 188

Query: 61  MDEFICKPLERGFEDMFQCQRNLQEMQ 62
           MDEFICK LERGFED+FQCQ NLQEMQ
Sbjct: 189 MDEFICKLLERGFEDIFQCQSNLQEMQ 215

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D6455.1e-2079.10Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V5X04.4e-1657.95Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CJ328.4e-1555.81Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BE513.2e-1453.85Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DG661.3e-1258.82Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0049656.12.58e-2780.30hypothetical protein E6C27_scaffold163G001250 [Cucumis melo var. makuwa] >TYK190... [more]
KAA0062630.12.79e-2157.95hypothetical protein E6C27_scaffold79G001410 [Cucumis melo var. makuwa][more]
TYK11947.14.69e-2155.81hypothetical protein E5676_scaffold177G001300 [Cucumis melo var. makuwa][more]
KAE8646246.11.61e-1946.73hypothetical protein Csa_023826, partial [Cucumis sativus][more]
TYJ98052.11.40e-1856.32hypothetical protein E5676_scaffold369G00020 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0008261.2IVF0008261.2mRNA