IVF0008155 (gene) Melon (IVF77) v1

Overview
NameIVF0008155
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionSWIM-type domain-containing protein
Locationchr04: 2845112 .. 2847250 (-)
RNA-Seq ExpressionIVF0008155
SyntenyIVF0008155
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAGGAGAGGGCGGGGAAGGAGATAGTCGAGGTGAAGGAAAAGAGGCTGAAAGTGGTTTACAAGAAATTTTAATCAACAGGCCTGGATAGAAATACTTTAAATTGCCACGTTGATTGCTTTGGCTTAGCTCACAAACTATCCTGCTGTTGTCTACTGTCCAAACCCTGACATGCTGCCGGCTTTCCCAGTGAAAAGTTTGTACTGTAAACTAAATTTCAGCAGCTTGAGAAGCTTGCAGACAGTGACAGCTTATTCTGTGTCTCATTGAGCCCAATCAACTTGGGAACTGATCCCCCGAGATTATAAATAAAGCTGCCATCGAATAGAACTGTTTGTCGTGGTTACTTCATTCTGTGTACGTGTTGCTTAAACTCGACGGTAAAACATCCACGAACCTTGTTGGCAACAAGCACAGAGACTGGTAAATTTTTAACATTATCAGGCAGTACGAAGGCAAATTGGCTACAGTTTATAAAAATGGTATTTGAAATGTTTGTGCTGAAGTATACATATATAATTAAATTTATTTTTACCCACTAGCGGTGATTTAAGACTCATAAGAGAGATTGGGTTACCCACCTTCAAACTTATTGAACTGAAGGCCAAGATGTTTATGACTTGGAATATTATGAACGACCGGTTGTTACTGATTTTAAGCACAAGAGGATTAACTTCTTAGGACTTTGTTTTAAAACTGATTTGAAATTGTGGAAAATGGAAGTATAAGATAGAAGTTGTAGTAATTTAGGAAGATATTCGGCGATATTTCCATTGAAACTGCATTGAGATAATGGCAGTATCATATCAGAAAAAGGATTCATATCATATCACATTTGAGAAAAAATTCCTGAAATTTTATGCTGGAAAAATGAAAAGAGTTTACAAGTGGCTTCTTAGCTAGGGAGAGGGAAAAGGTGGTAAGATTTATGAAGCTGAAAAAACTAAGGGGGAGCCTGAACTAAGCTTTTGGGGAAGATTTATGTAGTTAAACCAAGTGGCCTCTTAGCTAGTGGCTTCTGGAGCAATATTGATGCATATAATATGCATTTCTCAAACTAAGATTTATGCGACTGAAAAAAACCAAGTGGATCCTTAGCTAGTGGAAAGATTTATGCAGTTAAACCCACCTAATTATGTCAAATATAGCCTACTGGACCCAGAATTTCTATTTGACGAGAACTTGAGAAACGTATATTCTATGCATCAATATTGCTCCAGATCTTAGTTTGAGAAATGTTTATTCTTGCTTAGTTTTCTTTTGATTAAAGCCCAACCTCTAGATTTTGTTATAGAAAGTGAGACTTGAGCCTCTCTATTAAACCACCCTCTATTTAACTATATAGATCAATAGATAAGTATAATGGGAAATAGAGAGATTCGAACAACAAACTTCTTGGTATCTAATACATTTATAATATCAAATACCGACTGATTTGAATCACAGATCTCTTGGTTGTTAGTACATTTATATGCCAATTAACTTATGTTCGCTTTGGCCCGTATGTTTCTCTTAAGATATGATTAAGGGTTTAGTCAAAGTCACTATTATAATTAAGGATCGTTTGGACCACTTTGTCTAATGGAGTGGACTATTATAACTCACTTAATGTTCAGATCTCCCATTGTAATAGTTAAAATTTTAAATTATTATAACTCAGGTTCTTCTGTGGTAAAACTATTTGTAAATCCTCATTGTCTACAATTTTTACTATCTTGTACCCATCTCCTCTCCTTATTTTTAACTCAAACTAGAATAGTACGTTCCCAGCAAAGGCTAACTCACAAACTTATTATAATTTATAGTTATAATAACCAACTCAGAGTTCCAACAATATCACAAAGTTCCATTCTTTCTGTATCGGTGGCAGACTCATATTTTGCAGGGGCACTAGGGATCGTGAGGGAAACGCATGCACTGTGGGGGCTACCATTCCTGAGTGCATGGCAGTTAAAGGACCGTGGTTGTTGATGCATCCACGAGTCAATGTGGCAACTTCTTTAGGTCAGTCACTTCTCTACTCTACTGATTCATTTGATCTTAATGAAGCTCATATCATTTCAATCTATTTTGTTGATCAATATATAAATGAATATCATCTGAATTATTCCATCATTAATCTACTGTTAAATTAA

mRNA sequence

ATGGTGGAGGAGAGGGCGGGGAAGGAGATAGTCGAGCTCACAAACTATCCTGCTGTTGTCTACTGTCCAAACCCTGACATGCTGCCGGCTTTCCCACTGCCATCGAATAGAACTGTTTGTCGTGGTTACTTCATTCTGTGTACGTGTTGCTTAAACTCGACGGTAAAACATCCACGAACCTTGTTGGCAACAAGCACAGAGACTGGTAAATTTTTAACATTATCAGGCAGTACGAAGGCAAATTGGCTACAGTTTATAAAAATGTTCCATTCTTTCTGTATCGGTGGCAGACTCATATTTTGCAGGGGCACTAGGGATCGTGAGGGAAACGCATGCACTGTGGGGGCTACCATTCCTGAGTGCATGGCAGTTAAAGGACCGTGGTTGTTGATGCATCCACGAGTCAATGTGGCAACTTCTTTAGGTCAGTCACTTCTCTACTCTACTGATTCATTTGATCTTAATGAAGCTCATATCATTTCAATCTATTTTGTTGATCAATATATAAATGAATATCATCTGAATTATTCCATCATTAATCTACTGTTAAATTAA

Coding sequence (CDS)

ATGGTGGAGGAGAGGGCGGGGAAGGAGATAGTCGAGCTCACAAACTATCCTGCTGTTGTCTACTGTCCAAACCCTGACATGCTGCCGGCTTTCCCACTGCCATCGAATAGAACTGTTTGTCGTGGTTACTTCATTCTGTGTACGTGTTGCTTAAACTCGACGGTAAAACATCCACGAACCTTGTTGGCAACAAGCACAGAGACTGGTAAATTTTTAACATTATCAGGCAGTACGAAGGCAAATTGGCTACAGTTTATAAAAATGTTCCATTCTTTCTGTATCGGTGGCAGACTCATATTTTGCAGGGGCACTAGGGATCGTGAGGGAAACGCATGCACTGTGGGGGCTACCATTCCTGAGTGCATGGCAGTTAAAGGACCGTGGTTGTTGATGCATCCACGAGTCAATGTGGCAACTTCTTTAGGTCAGTCACTTCTCTACTCTACTGATTCATTTGATCTTAATGAAGCTCATATCATTTCAATCTATTTTGTTGATCAATATATAAATGAATATCATCTGAATTATTCCATCATTAATCTACTGTTAAATTAA

Protein sequence

MVEERAGKEIVELTNYPAVVYCPNPDMLPAFPLPSNRTVCRGYFILCTCCLNSTVKHPRTLLATSTETGKFLTLSGSTKANWLQFIKMFHSFCIGGRLIFCRGTRDREGNACTVGATIPECMAVKGPWLLMHPRVNVATSLGQSLLYSTDSFDLNEAHIISIYFVDQYINEYHLNYSIINLLLN
Homology
[Close]
BLAST of IVF0008155 vs. ExPASy TrEMBL
Match: A0A0A0LGQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G879520 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 9.2e-40
Identity = 104/180 (57.78%), Postives = 107/180 (59.44%), Query Frame = 0 

Query: 1   MVEERAGKEIVELTNYPAVVYCPNPDMLPAFP---------------------------- 60
           MVEERAGKEIVELTN PAVV CPNPDMLPA P                            
Sbjct: 14  MVEERAGKEIVELTNNPAVVDCPNPDMLPACPQLEKLADSDSLFCISSSPINLELIPRDY 73

Query: 61  ---LPSNRTVCRGYFILCTCCLNSTVKHPRTLLATSTETGKFLTLSGSTKANWLQFIKMF 120
              LPSN TVCR YFIL      +T+KHPR LLATSTET                    F
Sbjct: 74  KEKLPSNTTVCRDYFILVHV---ATIKHPRNLLATSTET-------------------EF 133

Query: 121 HSFCIGGRLIFCRGTRDRE-GNACTVGATIPECMAVKGPWLLMHPRVNVATSLGQSLLYS 149
           HSFC+GG L FCR T DRE G  CTVGATI E MAVKG WLLMHPRVNVATSLGQSLLYS
Sbjct: 134 HSFCMGGSLKFCRSTEDRERGTHCTVGATISEYMAVKGLWLLMHPRVNVATSLGQSLLYS 171

[Close]
BLAST of IVF0008155 vs. ExPASy TrEMBL
Match: A0A5D3E5J2 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007110 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-09
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 1   MVEERAGKEIVELTNYPAVVYCPNPDMLPAFPLPS 36
           MVEERAGKEIVELTNYPAVVYCPNPDMLPAFP+ S
Sbjct: 682 MVEERAGKEIVELTNYPAVVYCPNPDMLPAFPVKS 716

[Close]
BLAST of IVF0008155 vs. ExPASy TrEMBL
Match: A0A5A7T754 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G003370 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-09
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 1   MVEERAGKEIVELTNYPAVVYCPNPDMLPAFPLPS 36
           MVEERAGKEIVELTNYPAVVYCPNPDMLPAFP+ S
Sbjct: 683 MVEERAGKEIVELTNYPAVVYCPNPDMLPAFPVKS 717

[Close]
BLAST of IVF0008155 vs. NCBI nr
Match: KGN60270.2 (hypothetical protein Csa_001570 [Cucumis sativus])

HSP 1 Score: 145 bits (367), Expect = 1.28e-36
Identity = 92/159 (57.86%), Postives = 98/159 (61.64%), Query Frame = 0 

Query: 1   MVEERAGKEIVELTNYPAV--VYC--PNPDMLPAFP------LPSNRTVCRGYFILCTCC 60
           MVEERAGKEIVEL        ++C   +P  L   P      LPSN TVCR YFIL    
Sbjct: 807 MVEERAGKEIVELEKLADSDSLFCISSSPINLELIPRDYKEKLPSNTTVCRDYFILVHV- 866

Query: 61  LNSTVKHPRTLLATSTETGKFLTLSGSTKANWLQFIKMFHSFCIGGRLIFCRGTRDRE-G 120
             +T+KHPR LLATSTET                    FHSFC+GG L FCR T DRE G
Sbjct: 867 --ATIKHPRNLLATSTETE-------------------FHSFCMGGSLKFCRSTEDRERG 926

Query: 121 NACTVGATIPECMAVKGPWLLMHPRVNVATSLGQSLLYS 148
             CTVGATI E MAVKG WLLMHPRVNVATSLGQSLLYS
Sbjct: 927 THCTVGATISEYMAVKGLWLLMHPRVNVATSLGQSLLYS 943

[Close]
BLAST of IVF0008155 vs. NCBI nr
Match: TYK31403.1 (uncharacterized protein E5676_scaffold455G007110 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 3.47e-11
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 1   MVEERAGKEIVELTNYPAVVYCPNPDMLPAFPLPS 35
           MVEERAGKEIVELTNYPAVVYCPNPDMLPAFP+ S
Sbjct: 682 MVEERAGKEIVELTNYPAVVYCPNPDMLPAFPVKS 716

[Close]
BLAST of IVF0008155 vs. NCBI nr
Match: KAA0038783.1 (uncharacterized protein E6C27_scaffold92G003370 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 3.47e-11
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 1   MVEERAGKEIVELTNYPAVVYCPNPDMLPAFPLPS 35
           MVEERAGKEIVELTNYPAVVYCPNPDMLPAFP+ S
Sbjct: 683 MVEERAGKEIVELTNYPAVVYCPNPDMLPAFPVKS 717

The following BLAST results are available for this feature:
BLAST of IVF0008155 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0008155 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGQ89.2e-4057.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G879520 PE=4 SV=1[more]
A0A5D3E5J21.3e-0994.29SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7T7541.3e-0994.29SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
BLAST of IVF0008155 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60270.21.28e-3657.86hypothetical protein Csa_001570 [Cucumis sativus][more]
TYK31403.13.47e-1194.29uncharacterized protein E5676_scaffold455G007110 [Cucumis melo var. makuwa][more]
KAA0038783.13.47e-1194.29uncharacterized protein E6C27_scaffold92G003370 [Cucumis melo var. makuwa][more]
BLAST of IVF0008155 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0008155.1IVF0008155.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding