IVF0008122 (gene) Melon (IVF77) v1

Overview


Name	IVF0008122
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Location	chr05: 6611720 .. 6612298 (+)
RNA-Seq Expression	IVF0008122
Synteny	IVF0008122

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAGAGTGAATTTCCTCACGAAGTACCATGCAATATTTGACTACTATAATAAGGAGGTAGTACTAAGAGACCCCAAAAAAATTGAGATTAAATTTGAAGCCGATAAAAGAGTAGAGAGGATCATATTCGTACTTAAGGCGAGGAAGTTGATGAAGAATGAGCATGTCTCCTACTTGGCACATGTAATAAATACACTGGCACCAAGAAACGATCCTAGCAAGGTACCGATAGTTTGCGAATACATGGATGTATTTCCAAAAGAGTTGAGTGGGCTGCTGCCACAAAGGGAGATTAAGTTCACCATCGAAATTGTACAAGGAACTACACCAATTTCTCAAACCCCTTATCGCATGGCACTAGGCGAATTGAAGGAGCTAAAGAACCAATTAAAGGAGCTAATAGAGAAAGATTATATTCAGCCCAGGACCTCACCATGGAGAGCCCCTATCCTGTTTGAGGAAAAGGAAGATGGATCCATTAGGCTGTGCATTGACTACCGCCAATTAAATAAAGTGACGATGAAGAATAAGTACCCATTGCCACGAATAGAGAACCTCTTTGATCAATTGAAGTGA

mRNA sequence

ATGTTGAGAGTGAATTTCCTCACGAAGTACCATGCAATATTTGACTACTATAATAAGGAGGTAGTACTAAGAGACCCCAAAAAAATTGAGATTAAATTTGAAGCCGATAAAAGAGTAGAGAGGATCATATTCGTACTTAAGGCGAGGAAGTTGATGAAGAATGAGCATGTCTCCTACTTGGCACATGTAATAAATACACTGGCACCAAGAAACGATCCTAGCAAGGTACCGATAGTTTGCGAATACATGGATGTATTTCCAAAAGAGTTGAGTGGGCTGCTGCCACAAAGGGAGATTAAGTTCACCATCGAAATTGTACAAGGAACTACACCAATTTCTCAAACCCCTTATCGCATGGCACTAGGCGAATTGAAGGAGCTAAAGAACCAATTAAAGGAGCTAATAGAGAAAGATTATATTCAGCCCAGGACCTCACCATGGAGAGCCCCTATCCTGTTTGAGGAAAAGGAAGATGGATCCATTAGGCTGTGCATTGACTACCGCCAATTAAATAAAGTGACGATGAAGAATAAGTACCCATTGCCACGAATAGAGAACCTCTTTGATCAATTGAAGTGA

Coding sequence (CDS)

ATGTTGAGAGTGAATTTCCTCACGAAGTACCATGCAATATTTGACTACTATAATAAGGAGGTAGTACTAAGAGACCCCAAAAAAATTGAGATTAAATTTGAAGCCGATAAAAGAGTAGAGAGGATCATATTCGTACTTAAGGCGAGGAAGTTGATGAAGAATGAGCATGTCTCCTACTTGGCACATGTAATAAATACACTGGCACCAAGAAACGATCCTAGCAAGGTACCGATAGTTTGCGAATACATGGATGTATTTCCAAAAGAGTTGAGTGGGCTGCTGCCACAAAGGGAGATTAAGTTCACCATCGAAATTGTACAAGGAACTACACCAATTTCTCAAACCCCTTATCGCATGGCACTAGGCGAATTGAAGGAGCTAAAGAACCAATTAAAGGAGCTAATAGAGAAAGATTATATTCAGCCCAGGACCTCACCATGGAGAGCCCCTATCCTGTTTGAGGAAAAGGAAGATGGATCCATTAGGCTGTGCATTGACTACCGCCAATTAAATAAAGTGACGATGAAGAATAAGTACCCATTGCCACGAATAGAGAACCTCTTTGATCAATTGAAGTGA

Protein sequence

MLRVNFLTKYHAIFDYYNKEVVLRDPKKIEIKFEADKRVERIIFVLKARKLMKNEHVSYLAHVINTLAPRNDPSKVPIVCEYMDVFPKELSGLLPQREIKFTIEIVQGTTPISQTPYRMALGELKELKNQLKELIEKDYIQPRTSPWRAPILFEEKEDGSIRLCIDYRQLNKVTMKNKYPLPRIENLFDQLK

Homology

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BLAST of IVF0008122 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 76.6 bits (187), Expect = 3.3e-13
Identity = 34/93 (36.56%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 99  IKFTIEIVQGTTPISQTPYRMALGELKELKNQLKELIEKDYIQPRTSPWRAPILFEEKED 158
           +K  IEI  G       PY +     +E+   +++L++  +I P  SP  +P++   K+D
Sbjct: 584 VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKD 643

Query: 159 GSIRLCIDYRQLNKVTMKNKYPLPRIENLFDQL 192
           G+ RLC+DYR LNK T+ + +PLPRI+NL  ++
Sbjct: 644 GTFRLCVDYRTLNKATISDPFPLPRIDNLLSRI 676

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BLAST of IVF0008122 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 3.3e-13
Identity = 34/93 (36.56%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 99  IKFTIEIVQGTTPISQTPYRMALGELKELKNQLKELIEKDYIQPRTSPWRAPILFEEKED 158
           +K  IEI  G       PY +     +E+   +++L++  +I P  SP  +P++   K+D
Sbjct: 610 VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKD 669

Query: 159 GSIRLCIDYRQLNKVTMKNKYPLPRIENLFDQL 192
           G+ RLC+DYR LNK T+ + +PLPRI+NL  ++
Sbjct: 670 GTFRLCVDYRTLNKATISDPFPLPRIDNLLSRI 702

[Close]

BLAST of IVF0008122 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.1e-11
Identity = 37/120 (30.83%), Postives = 66/120 (55.00%), Query Frame = 0


Query: 78  IVCEYMDVFPKELSGLLPQREIKFTIEIVQGTTPISQTPYRMALGELKELKNQLKELIEK 137
           I  EY+D+F  E   +      K  + + +   P+    YR    +++E++ Q+++LI+ 
Sbjct: 282 ICSEYIDIFALESEPITVNNLYKQQLRL-KDDEPVYTKNYRSPHSQVEEIQAQVQKLIKD 341

Query: 138 DYIQPRTSPWRAPILFEEKEDG------SIRLCIDYRQLNKVTMKNKYPLPRIENLFDQL 192
             ++P  S + +P+L   K+          RL IDYRQ+NK  + +K+PLPRI+++ DQL
Sbjct: 342 KIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKFPLPRIDDILDQL 400

[Close]

BLAST of IVF0008122 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-08
Identity = 30/123 (24.39%), Postives = 67/123 (54.47%), Query Frame = 0


Query: 72  DPSKVPIVCEYMDVFPKELSGLLPQ--REIKFTIEIVQGTTPISQTPYRMALGELKELKN 131
           +P    I  E+ D+  +  +  LP+  + ++F +E+ Q    +    Y +  G+++ + +
Sbjct: 371 EPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMND 430

Query: 132 QLKELIEKDYIQPRTSPWRAPILFEEKEDGSIRLCIDYRQLNKVTMKNKYPLPRIENLFD 191
           ++ + ++   I+   +    P++F  K++G++R+ +DY+ LNK    N YPLP IE L  
Sbjct: 431 EINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLA 490

Query: 192 QLK 193
           +++
Sbjct: 491 KIQ 493

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BLAST of IVF0008122 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-08
Identity = 30/123 (24.39%), Postives = 67/123 (54.47%), Query Frame = 0


Query: 72  DPSKVPIVCEYMDVFPKELSGLLPQ--REIKFTIEIVQGTTPISQTPYRMALGELKELKN 131
           +P    I  E+ D+  +  +  LP+  + ++F +E+ Q    +    Y +  G+++ + +
Sbjct: 371 EPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMND 430

Query: 132 QLKELIEKDYIQPRTSPWRAPILFEEKEDGSIRLCIDYRQLNKVTMKNKYPLPRIENLFD 191
           ++ + ++   I+   +    P++F  K++G++R+ +DY+ LNK    N YPLP IE L  
Sbjct: 431 EINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLA 490

Query: 192 QLK 193
           +++
Sbjct: 491 KIQ 493

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BLAST of IVF0008122 vs. ExPASy TrEMBL
Match: A0A5D3D2P1 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00770 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 3.6e-103
Identity = 191/192 (99.48%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MLRVNFLTKYHAIFDYYNKEVVLRDPKKIEIKFEADKRVERIIFVLKARKLMKNEHVSYL 60
           MLRVNFLTKYHAIFDY NKEVVLRDPKKIEIKFEADKRVERIIFVLKARKLMKNEHVSYL
Sbjct: 201 MLRVNFLTKYHAIFDYSNKEVVLRDPKKIEIKFEADKRVERIIFVLKARKLMKNEHVSYL 260

Query: 61  AHVINTLAPRNDPSKVPIVCEYMDVFPKELSGLLPQREIKFTIEIVQGTTPISQTPYRMA 120
           AHVINTLAPRNDPSKVPIVCEYMDVFPKELSGLLPQREIKFTIEIVQGTTPISQTPYRMA
Sbjct: 261 AHVINTLAPRNDPSKVPIVCEYMDVFPKELSGLLPQREIKFTIEIVQGTTPISQTPYRMA 320

Query: 121 LGELKELKNQLKELIEKDYIQPRTSPWRAPILFEEKEDGSIRLCIDYRQLNKVTMKNKYP 180
           LGELKELKNQLKELIEKDYIQPRTSPWRAPILFEEKEDGSIRLCIDYRQLNKVTMKNKYP
Sbjct: 321 LGELKELKNQLKELIEKDYIQPRTSPWRAPILFEEKEDGSIRLCIDYRQLNKVTMKNKYP 380

Query: 181 LPRIENLFDQLK 193
           LPRIENLFDQLK
Sbjct: 381 LPRIENLFDQLK 392

[Close]

BLAST of IVF0008122 vs. ExPASy TrEMBL
Match: A0A5A7V4W9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00400 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 2.2e-52
Identity = 105/194 (54.12%), Postives = 143/194 (73.71%), Query Frame = 0


Query: 1   MLRVNFLTKYHAIFDYYNKEVVLRDPKKIEIKFEADKRV--ERIIFVLKARKLMKNEHVS 60
           +L ++FL  ++A  D + KEVV R P   E+ F   ++     +I VLKA KL++    +
Sbjct: 443 ILGMDFLFAHYASMDNHRKEVVFRKPSFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTT 502

Query: 61  YLAHVINTLAPRNDPSKVPIVCEYMDVFPKELSGLLPQREIKFTIEIVQGTTPISQTPYR 120
           +LAH++     +  P  VP+V E++DVFP +LSGL P REI+FTIE++ GT PISQ PYR
Sbjct: 503 FLAHIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYR 562

Query: 121 MALGELKELKNQLKELIEKDYIQPRTSPWRAPILFEEKEDGSIRLCIDYRQLNKVTMKNK 180
           MA  ELKELK QL+EL++K YI+P  SPW AP+LF +K+DG++RLCIDYRQLNKVT++NK
Sbjct: 563 MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 622

Query: 181 YPLPRIENLFDQLK 193
           YPLPRI++LFDQL+
Sbjct: 623 YPLPRIDDLFDQLR 636

[Close]

BLAST of IVF0008122 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 3.8e-52
Identity = 105/194 (54.12%), Postives = 143/194 (73.71%), Query Frame = 0


Query: 1   MLRVNFLTKYHAIFDYYNKEVVLRDPKKIEIKFEADKRV--ERIIFVLKARKLMKNEHVS 60
           +L ++FL  ++A  D + KEVV R P   E+ F   ++     +I VLKA KL++    +
Sbjct: 507 ILGMDFLFAHYASMDCHRKEVVFRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTA 566

Query: 61  YLAHVINTLAPRNDPSKVPIVCEYMDVFPKELSGLLPQREIKFTIEIVQGTTPISQTPYR 120
           +LAH++     +  P  VP+V E++DVFP +LSGL P REI+FTIE++ GT PISQ PYR
Sbjct: 567 FLAHIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYR 626

Query: 121 MALGELKELKNQLKELIEKDYIQPRTSPWRAPILFEEKEDGSIRLCIDYRQLNKVTMKNK 180
           MA  ELKELK QL+EL++K YI+P  SPW AP+LF +K+DG++RLCIDYRQLNKVT++NK
Sbjct: 627 MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 686

Query: 181 YPLPRIENLFDQLK 193
           YPLPRI++LFDQL+
Sbjct: 687 YPLPRIDDLFDQLR 700

[Close]

BLAST of IVF0008122 vs. ExPASy TrEMBL
Match: A0A5D3BS67 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00050 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 3.8e-52
Identity = 105/194 (54.12%), Postives = 143/194 (73.71%), Query Frame = 0


Query: 1   MLRVNFLTKYHAIFDYYNKEVVLRDPKKIEIKFEADKRV--ERIIFVLKARKLMKNEHVS 60
           +L ++FL  ++A  D + KEVV R P   E+ F   ++     +I VLKA KL++    +
Sbjct: 545 ILGMDFLFAHYASMDCHRKEVVFRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTA 604

Query: 61  YLAHVINTLAPRNDPSKVPIVCEYMDVFPKELSGLLPQREIKFTIEIVQGTTPISQTPYR 120
           +LAH++     +  P  VP+V E++DVFP +LSGL P REI+FTIE++ GT PISQ PYR
Sbjct: 605 FLAHIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYR 664

Query: 121 MALGELKELKNQLKELIEKDYIQPRTSPWRAPILFEEKEDGSIRLCIDYRQLNKVTMKNK 180
           MA  ELKELK QL+EL++K YI+P  SPW AP+LF +K+DG++RLCIDYRQLNKVT++NK
Sbjct: 665 MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 724

Query: 181 YPLPRIENLFDQLK 193
           YPLPRI++LFDQL+
Sbjct: 725 YPLPRIDDLFDQLR 738

[Close]

BLAST of IVF0008122 vs. ExPASy TrEMBL
Match: A0A5D3BHI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00450 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 3.8e-52
Identity = 105/194 (54.12%), Postives = 143/194 (73.71%), Query Frame = 0


Query: 1   MLRVNFLTKYHAIFDYYNKEVVLRDPKKIEIKFEADKRV--ERIIFVLKARKLMKNEHVS 60
           +L ++FL  ++A  D + KEVV R P   E+ F   ++     +I VLKA KL++    +
Sbjct: 545 ILGMDFLFAHYASMDCHRKEVVFRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTA 604

Query: 61  YLAHVINTLAPRNDPSKVPIVCEYMDVFPKELSGLLPQREIKFTIEIVQGTTPISQTPYR 120
           +LAH++     +  P  VP+V E++DVFP +LSGL P REI+FTIE++ GT PISQ PYR
Sbjct: 605 FLAHIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYR 664

Query: 121 MALGELKELKNQLKELIEKDYIQPRTSPWRAPILFEEKEDGSIRLCIDYRQLNKVTMKNK 180
           MA  ELKELK QL+EL++K YI+P  SPW AP+LF +K+DG++RLCIDYRQLNKVT++NK
Sbjct: 665 MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 724

Query: 181 YPLPRIENLFDQLK 193
           YPLPRI++LFDQL+
Sbjct: 725 YPLPRIDDLFDQLR 738

[Close]

BLAST of IVF0008122 vs. NCBI nr
Match: KAA0031989.1 (putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK16809.1 putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 384 bits (986), Expect = 1.91e-131
Identity = 191/192 (99.48%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MLRVNFLTKYHAIFDYYNKEVVLRDPKKIEIKFEADKRVERIIFVLKARKLMKNEHVSYL 60
           MLRVNFLTKYHAIFDY NKEVVLRDPKKIEIKFEADKRVERIIFVLKARKLMKNEHVSYL
Sbjct: 201 MLRVNFLTKYHAIFDYSNKEVVLRDPKKIEIKFEADKRVERIIFVLKARKLMKNEHVSYL 260

Query: 61  AHVINTLAPRNDPSKVPIVCEYMDVFPKELSGLLPQREIKFTIEIVQGTTPISQTPYRMA 120
           AHVINTLAPRNDPSKVPIVCEYMDVFPKELSGLLPQREIKFTIEIVQGTTPISQTPYRMA
Sbjct: 261 AHVINTLAPRNDPSKVPIVCEYMDVFPKELSGLLPQREIKFTIEIVQGTTPISQTPYRMA 320

Query: 121 LGELKELKNQLKELIEKDYIQPRTSPWRAPILFEEKEDGSIRLCIDYRQLNKVTMKNKYP 180
           LGELKELKNQLKELIEKDYIQPRTSPWRAPILFEEKEDGSIRLCIDYRQLNKVTMKNKYP
Sbjct: 321 LGELKELKNQLKELIEKDYIQPRTSPWRAPILFEEKEDGSIRLCIDYRQLNKVTMKNKYP 380

Query: 181 LPRIENLFDQLK 192
           LPRIENLFDQLK
Sbjct: 381 LPRIENLFDQLK 392

[Close]

BLAST of IVF0008122 vs. NCBI nr
Match: WP_217833159.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 219 bits (557), Expect = 1.98e-66
Identity = 108/194 (55.67%), Postives = 145/194 (74.74%), Query Frame = 0


Query: 1   MLRVNFLTKYHAIFDYYNKEVVLRDPKKIEIKFEADKRV--ERIIFVLKARKLMKNEHVS 60
           +L ++FL+KY A  D + KEVV +  +  E+ F  D+++    +I  +KA KL+     +
Sbjct: 97  ILGMDFLSKYRATMDCFQKEVVFKGFEGTEVIFRGDRKILPTCVISAVKAMKLLSKGCEA 156

Query: 61  YLAHVINTLAPRNDPSKVPIVCEYMDVFPKELSGLLPQREIKFTIEIVQGTTPISQTPYR 120
           YLAHV+     +  P  VPIV E++DVFP+ELSGL P RE++FTI++V GTTPISQ PYR
Sbjct: 157 YLAHVMEVKVEKLKPEDVPIVQEFLDVFPEELSGLPPDREVEFTIDLVPGTTPISQAPYR 216

Query: 121 MALGELKELKNQLKELIEKDYIQPRTSPWRAPILFEEKEDGSIRLCIDYRQLNKVTMKNK 180
           MA  ELKELK QL+EL++K YI+P  SPW AP+LF +K+DG++RLCIDYRQLNKVT+ NK
Sbjct: 217 MAPSELKELKVQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTMRLCIDYRQLNKVTICNK 276

Query: 181 YPLPRIENLFDQLK 192
           YPLPRI++LFDQL+
Sbjct: 277 YPLPRIDDLFDQLR 290

[Close]

BLAST of IVF0008122 vs. NCBI nr
Match: KAA0036100.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 210 bits (535), Expect = 2.96e-63
Identity = 105/191 (54.97%), Postives = 142/191 (74.35%), Query Frame = 0


Query: 4   VNFLTKYHAIFDYYNKEVVLRDPKKIEIKFEADKR-VER-IIFVLKARKLMKNEHVSYLA 63
           ++FL  ++A  D + KEVV R P   E+ F   ++ V R +I VLKA KL++    ++LA
Sbjct: 1   MDFLFAHYASMDCHRKEVVFRKPGFAEVVFRGMRKDVSRSLISVLKAEKLLRKGCTAFLA 60

Query: 64  HVINTLAPRNDPSKVPIVCEYMDVFPKELSGLLPQREIKFTIEIVQGTTPISQTPYRMAL 123
           H++     +  P  VP+V E++DVFP +LSGL P REI+FTIE++ GT PISQ PYRMA 
Sbjct: 61  HIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMAP 120

Query: 124 GELKELKNQLKELIEKDYIQPRTSPWRAPILFEEKEDGSIRLCIDYRQLNKVTMKNKYPL 183
            ELKELK QL+EL++K YI+P   PW AP+LF +K+DG++RLCIDYRQLNKVT++NKYPL
Sbjct: 121 SELKELKIQLQELVDKGYIRPSVLPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPL 180

Query: 184 PRIENLFDQLK 192
           PRI++LFDQL+
Sbjct: 181 PRIDDLFDQLR 191

[Close]

BLAST of IVF0008122 vs. NCBI nr
Match: KAA0040571.1 (uncharacterized protein E6C27_scaffold262G001410 [Cucumis melo var. makuwa] >TYK05614.1 uncharacterized protein E5676_scaffold98G00700 [Cucumis melo var. makuwa])

HSP 1 Score: 202 bits (514), Expect = 6.40e-63
Identity = 102/182 (56.04%), Postives = 127/182 (69.78%), Query Frame = 0


Query: 1   MLRVNFLTKYHAIFDYYNKEVVLRDPKKIEIKFEADKRVERIIFVLKARKLMKNEHVSYL 60
           +L + FLTKYHA+ D +NKE                           ARKLMK  H +YL
Sbjct: 16  ILGMAFLTKYHAVLDCFNKE---------------------------ARKLMKKGHTAYL 75

Query: 61  AHVINTLAPRNDPSKVPIVCEYMDVFPKELSGLLPQREIKFTIEIVQGTTPISQTPYRMA 120
            HV++T A R+DPSKVPIVCEY+DVF +ELSG  P+REI+F I++   +T ISQ PY M 
Sbjct: 76  EHVVDTRASRDDPSKVPIVCEYLDVFLEELSGFSPKREIEFEIKVASWSTLISQIPYYMT 135

Query: 121 LGELKELKNQLKELIEKDYIQPRTSPWRAPILFEEKEDGSIRLCIDYRQLNKVTMKNKYP 180
             ++KELKNQL+ELIEK YI+P TSPW AP+LF + +DGS+RLCIDYRQL+KVT+KNKYP
Sbjct: 136 PNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYP 170

Query: 181 LP 182
           LP
Sbjct: 196 LP 170

[Close]

BLAST of IVF0008122 vs. NCBI nr
Match: TYK02467.1 (uncharacterized protein E5676_scaffold1738G00930 [Cucumis melo var. makuwa])

HSP 1 Score: 202 bits (513), Expect = 1.91e-62
Identity = 105/181 (58.01%), Postives = 128/181 (70.72%), Query Frame = 0


Query: 1   MLRVNFLTKYHAIFDYYNKEVVLRDPKKIEIKFEADKRVERIIFVLKARKLMKNEHVSYL 60
           +L +NFLTKYH I D  NKEVVLR+  K E+K+                      H +YL
Sbjct: 33  ILGMNFLTKYHEILDCSNKEVVLRELGKFEVKWR---------------------HTAYL 92

Query: 61  AHVINTLAPRNDPSKVPIVCEYMDVFPKELSGLLPQREIKFTIEIVQGTTPISQTPYRMA 120
           AHVI+T   ++D   VPIVCEY+DVFP+ELS L  + EI+ TI+++  TTPISQTPYRMA
Sbjct: 93  AHVIDTKMVKSDLKNVPIVCEYLDVFPEELSRLALKGEIEITIDVLPRTTPISQTPYRMA 152

Query: 121 LGELKELKNQLKELIEKDYIQPRTSPWRAPILFEEKEDGSIRLCIDYRQLNKVTMKNKYP 180
             ELKELK+QL+EL+EK  IQP T PW  PILF +K+DGS+RLCIDYRQLNKVT+KNKYP
Sbjct: 153 PSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYP 192

The following BLAST results are available for this feature:

BLAST of IVF0008122 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	3.3e-13	36.56	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	3.3e-13	36.56	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P10394	3.1e-11	30.83	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]
Q9UR07	1.1e-08	24.39	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	1.1e-08	24.39	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of IVF0008122 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D2P1	3.6e-103	99.48	Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7V4W9	2.2e-52	54.12	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67...	[more]
A0A5A7U2V7	3.8e-52	54.12	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5D3BS67	3.8e-52	54.12	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50...	[more]
A0A5D3BHI1	3.8e-52	54.12	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]

BLAST of IVF0008122 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031989.1	1.91e-131	99.48	putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK16809.1 putative...	[more]
WP_217833159.1	1.98e-66	55.67	hypothetical protein, partial [Synechococcus sp. PCC 7002]	[more]
KAA0036100.1	2.96e-63	54.97	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0040571.1	6.40e-63	56.04	uncharacterized protein E6C27_scaffold262G001410 [Cucumis melo var. makuwa] >TYK...	[more]
TYK02467.1	1.91e-62	58.01	uncharacterized protein E5676_scaffold1738G00930 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0008122 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 117..137
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 99..178 e-value: 6.9E-30 score: 105.9
None	No IPR available	PANTHER	PTHR24559:SF382	SUBFAMILY NOT NAMED	coord: 58..188
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 58..188
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 179..192 e-value: 6.9E-30 score: 105.9
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 78..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0008122.2	IVF0008122.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016779	nucleotidyltransferase activity