IVF0008102 (gene) Melon (IVF77) v1

Overview


Name	IVF0008102
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	VQ motif-containing protein 8
Location	chr10: 1392450 .. 1392958 (-)
RNA-Seq Expression	IVF0008102
Synteny	IVF0008102

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTTTTCTCCCCCTTCTTTCGGTTAACTTTTTACTTCCAATTAAAATTACACACAAAATCCAATCCCAAATCTCTCTGGTTTTTTCCTAATTAATAATTAAATTCATCCACCATGAGCCCACCTAAATCTTCCCAAATCAATGGCCTTCGCCCTTCTCCTCTCTTAATCCACAACGATTCTCGTCTTGTTCGTAAGCCCCAGCTTCGGCAGCCACTCATCATTTACACCCATTCCCCCAAAATCATCCACACCCACCCTAAGGATTTCATGGCATTGGTTCAACGCCTCACTGGCTTCAACCCACCACCGCCGCAGCCGGAAAGAAATTCCAACGACAATGATTCTACGTCGGGTGTGACGTCGGAGGAGGATGTTAATGAAAAACAGAGTAATTGTTCGGTTCTTAAATATTCTTCTGATGTTACGACGCCGTTTTCGTCCCCTGCTTTCCTTAGCTCCTTATCCCCTTCTTTCATGGACTTTCTTAAAGCCCTCCCTGAATTTTAA

mRNA sequence

CATTTTTCTCCCCCTTCTTTCGGTTAACTTTTTACTTCCAATTAAAATTACACACAAAATCCAATCCCAAATCTCTCTGGTTTTTTCCTAATTAATAATTAAATTCATCCACCATGAGCCCACCTAAATCTTCCCAAATCAATGGCCTTCGCCCTTCTCCTCTCTTAATCCACAACGATTCTCGTCTTGTTCGTAAGCCCCAGCTTCGGCAGCCACTCATCATTTACACCCATTCCCCCAAAATCATCCACACCCACCCTAAGGATTTCATGGCATTGGTTCAACGCCTCACTGGCTTCAACCCACCACCGCCGCAGCCGGAAAGAAATTCCAACGACAATGATTCTACGTCGGGTGTGACGTCGGAGGAGGATGTTAATGAAAAACAGAGTAATTGTTCGGTTCTTAAATATTCTTCTGATGTTACGACGCCGTTTTCGTCCCCTGCTTTCCTTAGCTCCTTATCCCCTTCTTTCATGGACTTTCTTAAAGCCCTCCCTGAATTTTAA

Coding sequence (CDS)

ATGAGCCCACCTAAATCTTCCCAAATCAATGGCCTTCGCCCTTCTCCTCTCTTAATCCACAACGATTCTCGTCTTGTTCGTAAGCCCCAGCTTCGGCAGCCACTCATCATTTACACCCATTCCCCCAAAATCATCCACACCCACCCTAAGGATTTCATGGCATTGGTTCAACGCCTCACTGGCTTCAACCCACCACCGCCGCAGCCGGAAAGAAATTCCAACGACAATGATTCTACGTCGGGTGTGACGTCGGAGGAGGATGTTAATGAAAAACAGAGTAATTGTTCGGTTCTTAAATATTCTTCTGATGTTACGACGCCGTTTTCGTCCCCTGCTTTCCTTAGCTCCTTATCCCCTTCTTTCATGGACTTTCTTAAAGCCCTCCCTGAATTTTAA

Protein sequence

MSPPKSSQINGLRPSPLLIHNDSRLVRKPQLRQPLIIYTHSPKIIHTHPKDFMALVQRLTGFNPPPPQPERNSNDNDSTSGVTSEEDVNEKQSNCSVLKYSSDVTTPFSSPAFLSSLSPSFMDFLKALPEF

Homology

[Close]

BLAST of IVF0008102 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.0e-10
Identity = 52/151 (34.44%), Postives = 75/151 (49.67%), Query Frame = 0


Query: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRK---------PQLR-QPLIIYTHSPKIIHTHPK 60
           M P + ++ING RPS L +  +S  ++K         P  R  P+IIY HSPK+IHT  +
Sbjct: 1   MIPTRCNEINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAE 60

Query: 61  DFMALVQRLTGFNPPPPQPERNSNDNDSTSGVTSE-------------EDVNEKQSNCSV 120
           DFMALVQRLTG +    +  R +    S+S VT E             +D  ++Q    +
Sbjct: 61  DFMALVQRLTGLD----EIIRRNTSESSSSVVTEEVNVGDDNTAAPFSQDRTQRQKLTDM 120

Query: 121 LKYSSDVTTPFSSPAFLSSLSPSFMDFLKAL 129
             ++    T F SP  L  +SP+  D  + L
Sbjct: 121 PLFTPSSMTLFGSPTQLMYMSPNRTDSFRPL 147

[Close]

BLAST of IVF0008102 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-09
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 14  PSPLLIHNDSRLVRKP----------QLRQPLIIYTHSPKIIHTHPKDFMALVQRLTG 62
           P  L ++ DS +++KP          + R P+IIYTH+P+IIHT+PKDFMALVQ+LTG
Sbjct: 43  PPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of IVF0008102 vs. ExPASy Swiss-Prot
Match: Q8LGD5 (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-07
Identity = 29/72 (40.28%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 8  QINGLRPSPLLIHNDSRLVRKPQL----------------RQPLIIYTHSPKIIHTHPKD 64
          QI G RPSPL +H DS  ++KP                  R+P++IY  SPK++H    +
Sbjct: 23 QICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHATASE 82

[Close]

BLAST of IVF0008102 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.3e-05
Identity = 35/110 (31.82%), Postives = 54/110 (49.09%), Query Frame = 0


Query: 4   PKSSQINGLRPSPLLIHNDS-RLVRKPQLRQ-----------------------PLIIYT 63
           P+S    G +P+PL +  DS ++++KP L                         P+ IYT
Sbjct: 6   PRSRGNMGPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYT 65

Query: 64  HSPKIIHTHPKDFMALVQRLTGFNPPPPQPERNSNDNDSTSGVTSEEDVN 90
            +P+IIHTHP +FM LVQRLTG      Q   ++  + S+S  +  +D +
Sbjct: 66  VTPRIIHTHPNNFMTLVQRLTG------QTSTSTTSSSSSSSTSEPKDTS 109

[Close]

BLAST of IVF0008102 vs. ExPASy TrEMBL
Match: A0A5D3CFH5 (VQ motif-containing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001070 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.6e-65
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRKPQLRQPLIIYTHSPKIIHTHPKDFMALVQRLT 60
           MSPPKSSQINGLRPSPLLIHNDSRLVRKPQLRQPLIIYTHSPKIIHTHPKDFMALVQRLT
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRKPQLRQPLIIYTHSPKIIHTHPKDFMALVQRLT 60

Query: 61  GFNPPPPQPERNSNDNDSTSGVTSEEDVNEKQSNCSVLKYSSDVTTPFSSPAFLSSLSPS 120
           GFNPPPPQPERNSNDNDSTSGVTSEEDVNEKQSNCSVLKYSSDVTTPFSSPAFLSSLSPS
Sbjct: 61  GFNPPPPQPERNSNDNDSTSGVTSEEDVNEKQSNCSVLKYSSDVTTPFSSPAFLSSLSPS 120

Query: 121 FMDFLKALPEF 132
           FMDFLKALPEF
Sbjct: 121 FMDFLKALPEF 131

[Close]

BLAST of IVF0008102 vs. ExPASy TrEMBL
Match: A0A1S3CS67 (VQ motif-containing protein 8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103504155 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.6e-65
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRKPQLRQPLIIYTHSPKIIHTHPKDFMALVQRLT 60
           MSPPKSSQINGLRPSPLLIHNDSRLVRKPQLRQPLIIYTHSPKIIHTHPKDFMALVQRLT
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRKPQLRQPLIIYTHSPKIIHTHPKDFMALVQRLT 60

Query: 61  GFNPPPPQPERNSNDNDSTSGVTSEEDVNEKQSNCSVLKYSSDVTTPFSSPAFLSSLSPS 120
           GFNPPPPQPERNSNDNDSTSGVTSEEDVNEKQSNCSVLKYSSDVTTPFSSPAFLSSLSPS
Sbjct: 61  GFNPPPPQPERNSNDNDSTSGVTSEEDVNEKQSNCSVLKYSSDVTTPFSSPAFLSSLSPS 120

Query: 121 FMDFLKALPEF 132
           FMDFLKALPEF
Sbjct: 121 FMDFLKALPEF 131

[Close]

BLAST of IVF0008102 vs. ExPASy TrEMBL
Match: A0A0A0KT78 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609750 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.4e-53
Identity = 121/143 (84.62%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRKP-QLRQPLIIYTHSPKIIHTHPKDFMALVQRL 60
           MSPPKSS+ING RPSPLLIHN SRL+RKP QLRQPLIIYTHSPKIIHTHPKDFMALVQRL
Sbjct: 1   MSPPKSSEINGPRPSPLLIHNHSRLIRKPVQLRQPLIIYTHSPKIIHTHPKDFMALVQRL 60

Query: 61  TGFNPPPPQP---------ERNSNDNDSTSGVTSEEDVNEKQSNCSVLKYSS-DVTTPFS 120
           TG NPPPP P         ERN NDNDS+SGVT+EED+NEKQSNCSVLKYSS DVTTPFS
Sbjct: 61  TGCNPPPPLPLPSAKPSLSERNLNDNDSSSGVTTEEDINEKQSNCSVLKYSSHDVTTPFS 120

Query: 121 SPAFL-SSLSPSFMDFLKALPEF 132
           SPAFL SSLSPSFMDFLKALPEF
Sbjct: 121 SPAFLSSSLSPSFMDFLKALPEF 143

[Close]

BLAST of IVF0008102 vs. ExPASy TrEMBL
Match: A0A6J1DC48 (VQ motif-containing protein 8, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018730 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 7.3e-31
Identity = 92/163 (56.44%), Postives = 103/163 (63.19%), Query Frame = 0


Query: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRK--PQLRQPLIIYTHSPKIIHTHPKDFMALVQR 60
           MSP KS  ING RPSPLLIH  SRL+RK  PQLRQPLIIYTHSPKIIHT PKDFMALVQR
Sbjct: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQR 60

Query: 61  LTGFNPPPP----QPERNSN---DNDSTSGVTSEED----------VNEKQSNCSVLKYS 120
           LTGF PPPP      +RN+N   DNDS+S +T E +          V E QS      + 
Sbjct: 61  LTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDHNHHPSYVKEVQSQSQSHSFL 120

Query: 121 SDV-------------TTPFSSPAFLSSLSPSFMDFLKALPEF 132
           +DV              T F+SP   +SLSPSFM+FLK LPEF
Sbjct: 121 ADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFLKGLPEF 163

[Close]

BLAST of IVF0008102 vs. ExPASy TrEMBL
Match: A0A6P6V8N0 (VQ motif-containing protein 8, chloroplastic-like OS=Coffea arabica OX=13443 GN=LOC113717710 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.5e-15
Identity = 73/191 (38.22%), Postives = 92/191 (48.17%), Query Frame = 0


Query: 9   INGLRPSPLLIHNDSRLVRKP---------------------QLRQPLIIYTHSPKIIHT 68
           ING RPSPL I+ DS +++KP                     Q RQP+IIYTHSPKIIHT
Sbjct: 15  INGPRPSPLRINKDSHVIQKPSSMNQVYKKAATEQNTRLSTQQPRQPVIIYTHSPKIIHT 74

Query: 69  HPKDFMALVQRLTGFNPPPPQPER------------NSNDNDSTSGVTSEEDVNEKQSNC 128
            PKDFMALVQ+LTGF+    Q               +  DNDS+S VTS +D  E  +  
Sbjct: 75  KPKDFMALVQKLTGFSRSEEQIVEAESKRDDQTITISQEDNDSSS-VTS-DDKYEGDNAS 134

Query: 129 SVLKYSSDVTTP-----------------------------------FSSPAFLSSLSPS 132
            V+K SS   +P                                   F+SP  +SSLSPS
Sbjct: 135 DVIKESSSAVSPVNKGLNPYLTDIPLFTPNSNLFSSPQPVFRYPDVVFTSPNIVSSLSPS 194

[Close]

BLAST of IVF0008102 vs. NCBI nr
Match: XP_008466850.1 (PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo] >KAA0034563.1 VQ motif-containing protein 8 [Cucumis melo var. makuwa] >TYK09116.1 VQ motif-containing protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 258 bits (658), Expect = 1.86e-86
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRKPQLRQPLIIYTHSPKIIHTHPKDFMALVQRLT 60
           MSPPKSSQINGLRPSPLLIHNDSRLVRKPQLRQPLIIYTHSPKIIHTHPKDFMALVQRLT
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRKPQLRQPLIIYTHSPKIIHTHPKDFMALVQRLT 60

Query: 61  GFNPPPPQPERNSNDNDSTSGVTSEEDVNEKQSNCSVLKYSSDVTTPFSSPAFLSSLSPS 120
           GFNPPPPQPERNSNDNDSTSGVTSEEDVNEKQSNCSVLKYSSDVTTPFSSPAFLSSLSPS
Sbjct: 61  GFNPPPPQPERNSNDNDSTSGVTSEEDVNEKQSNCSVLKYSSDVTTPFSSPAFLSSLSPS 120

Query: 121 FMDFLKALPEF 131
           FMDFLKALPEF
Sbjct: 121 FMDFLKALPEF 131

[Close]

BLAST of IVF0008102 vs. NCBI nr
Match: XP_038893302.1 (VQ motif-containing protein 8, chloroplastic [Benincasa hispida])

HSP 1 Score: 202 bits (513), Expect = 5.41e-64
Identity = 108/156 (69.23%), Postives = 122/156 (78.21%), Query Frame = 0


Query: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRKPQLRQPLIIYTHSPKIIHTHPKDFMALVQRLT 60
           MSPPKS +ING RPSPLLIH DSR +RKPQLRQP+IIYTHSPKIIHT PKDFMALVQRLT
Sbjct: 1   MSPPKSCEINGPRPSPLLIHKDSRFIRKPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLT 60

Query: 61  GFNPPPPQP----------ERNSNDNDSTSGVTSEEDVNE---------------KQSNC 120
           GFNPPPP P          ERN NDNDS+SG+T+EE++NE               +QSN 
Sbjct: 61  GFNPPPPPPPSNALSLSFSERNFNDNDSSSGLTTEEEINECGDQKQSVVLKQLVQRQSNS 120

Query: 121 SVLKYSSDVTTPFSSPAFLSSLSPSFMDFLKALPEF 131
           S+L+YSSDVTTPFSSPA ++SLSPSFM+FLKALPEF
Sbjct: 121 SLLRYSSDVTTPFSSPALINSLSPSFMEFLKALPEF 156

[Close]

BLAST of IVF0008102 vs. NCBI nr
Match: KGN52621.2 (hypothetical protein Csa_008052 [Cucumis sativus])

HSP 1 Score: 154 bits (390), Expect = 5.73e-46
Identity = 82/102 (80.39%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRKP-QLRQPLIIYTHSPKIIHTHPKDFMALVQRL 60
           MSPPKSS+ING RPSPLLIHN SRL+RKP QLRQPLIIYTHSPKIIHTHPKDFMALVQRL
Sbjct: 1   MSPPKSSEINGPRPSPLLIHNHSRLIRKPVQLRQPLIIYTHSPKIIHTHPKDFMALVQRL 60

Query: 61  TGFNPPPPQP---------ERNSNDNDSTSGVTSEEDVNEKQ 92
           TG NPPPP P         ERN NDNDS+SGVT+EED+NEKQ
Sbjct: 61  TGCNPPPPLPLPSAKPSLSERNLNDNDSSSGVTTEEDINEKQ 102

[Close]

BLAST of IVF0008102 vs. NCBI nr
Match: XP_022150646.1 (VQ motif-containing protein 8, chloroplastic [Momordica charantia])

HSP 1 Score: 142 bits (359), Expect = 1.76e-40
Identity = 92/163 (56.44%), Postives = 103/163 (63.19%), Query Frame = 0


Query: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRKP--QLRQPLIIYTHSPKIIHTHPKDFMALVQR 60
           MSP KS  ING RPSPLLIH  SRL+RKP  QLRQPLIIYTHSPKIIHT PKDFMALVQR
Sbjct: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQR 60

Query: 61  LTGFNPPPP----QPERNSN---DNDSTSGVTSEED----------VNEKQSNCSVLKYS 120
           LTGF PPPP      +RN+N   DNDS+S +T E +          V E QS      + 
Sbjct: 61  LTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDHNHHPSYVKEVQSQSQSHSFL 120

Query: 121 SDV-------------TTPFSSPAFLSSLSPSFMDFLKALPEF 131
           +DV              T F+SP   +SLSPSFM+FLK LPEF
Sbjct: 121 ADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFLKGLPEF 163

[Close]

BLAST of IVF0008102 vs. NCBI nr
Match: KAG7013019.1 (VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125 bits (315), Expect = 2.18e-34
Identity = 74/135 (54.81%), Postives = 92/135 (68.15%), Query Frame = 0


Query: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRKP----QLRQPLIIYTHSPKIIHTHPKDFMALV 60
           MSPPK   I+G RP PLL+H  SR +RKP    QLR+P+IIYTHSPKIIHT PKDFMALV
Sbjct: 1   MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALV 60

Query: 61  QRLTGFNPPPPQPERNSNDNDSTSGVTSEEDVNEKQSNCSVLKYSSDVTTPFSSPAFLSS 120
           QRLTG +PP    ++  +DN+ +S V +EED     SNC +          F+  + ++S
Sbjct: 61  QRLTGCSPP--NADKAPSDNNDSSSVVTEED-----SNCPL----------FTPRSLVNS 118

Query: 121 LSPSFMDFLKALPEF 131
           LSPSFM+FLK LPEF
Sbjct: 121 LSPSFMEFLKGLPEF 118

[Close]

BLAST of IVF0008102 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-11
Identity = 52/151 (34.44%), Postives = 75/151 (49.67%), Query Frame = 0


Query: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRK---------PQLR-QPLIIYTHSPKIIHTHPK 60
           M P + ++ING RPS L +  +S  ++K         P  R  P+IIY HSPK+IHT  +
Sbjct: 1   MIPTRCNEINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAE 60

Query: 61  DFMALVQRLTGFNPPPPQPERNSNDNDSTSGVTSE-------------EDVNEKQSNCSV 120
           DFMALVQRLTG +    +  R +    S+S VT E             +D  ++Q    +
Sbjct: 61  DFMALVQRLTGLD----EIIRRNTSESSSSVVTEEVNVGDDNTAAPFSQDRTQRQKLTDM 120

Query: 121 LKYSSDVTTPFSSPAFLSSLSPSFMDFLKAL 129
             ++    T F SP  L  +SP+  D  + L
Sbjct: 121 PLFTPSSMTLFGSPTQLMYMSPNRTDSFRPL 147

[Close]

BLAST of IVF0008102 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 62.8 bits (151), Expect = 2.4e-10
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 14  PSPLLIHNDSRLVRKP----------QLRQPLIIYTHSPKIIHTHPKDFMALVQRLTG 62
           P  L ++ DS +++KP          + R P+IIYTH+P+IIHT+PKDFMALVQ+LTG
Sbjct: 43  PPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of IVF0008102 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-09
Identity = 35/82 (42.68%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 4  PKSSQINGLRPSPLLIHNDS-RLVRKPQLRQ-----------------------PLIIYT 62
          P+S  I G RP PL +  DS ++++KP L                         P+IIYT
Sbjct: 6  PRSRGILGPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVIIYT 65

[Close]

BLAST of IVF0008102 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 )

HSP 1 Score: 56.6 bits (135), Expect = 1.7e-08
Identity = 29/72 (40.28%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 8  QINGLRPSPLLIHNDSRLVRKPQL----------------RQPLIIYTHSPKIIHTHPKD 64
          QI G RPSPL +H DS  ++KP                  R+P++IY  SPK++H    +
Sbjct: 23 QICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHATASE 82

[Close]

BLAST of IVF0008102 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 50.1 bits (118), Expect = 1.6e-06
Identity = 35/110 (31.82%), Postives = 54/110 (49.09%), Query Frame = 0


Query: 4   PKSSQINGLRPSPLLIHNDS-RLVRKPQLRQ-----------------------PLIIYT 63
           P+S    G +P+PL +  DS ++++KP L                         P+ IYT
Sbjct: 6   PRSRGNMGPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYT 65

Query: 64  HSPKIIHTHPKDFMALVQRLTGFNPPPPQPERNSNDNDSTSGVTSEEDVN 90
            +P+IIHTHP +FM LVQRLTG      Q   ++  + S+S  +  +D +
Sbjct: 66  VTPRIIHTHPNNFMTLVQRLTG------QTSTSTTSSSSSSSTSEPKDTS 109

The following BLAST results are available for this feature:

BLAST of IVF0008102 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CA36	4.0e-10	34.44	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9LS54	3.4e-09	51.72	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]
Q8LGD5	2.4e-07	40.28	Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2	[more]
F4HWF9	2.3e-05	31.82	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]

BLAST of IVF0008102 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CFH5	1.6e-65	100.00	VQ motif-containing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CS67	1.6e-65	100.00	VQ motif-containing protein 8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0KT78	1.4e-53	84.62	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609750 PE=4 SV=...	[more]
A0A6J1DC48	7.3e-31	56.44	VQ motif-containing protein 8, chloroplastic OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6P6V8N0	2.5e-15	38.22	VQ motif-containing protein 8, chloroplastic-like OS=Coffea arabica OX=13443 GN=...	[more]

BLAST of IVF0008102 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466850.1	1.86e-86	100.00	PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo] >KAA...	[more]
XP_038893302.1	5.41e-64	69.23	VQ motif-containing protein 8, chloroplastic [Benincasa hispida]	[more]
KGN52621.2	5.73e-46	80.39	hypothetical protein Csa_008052 [Cucumis sativus]	[more]
XP_022150646.1	1.76e-40	56.44	VQ motif-containing protein 8, chloroplastic [Momordica charantia]	[more]
KAG7013019.1	2.18e-34	54.81	VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma su...	[more]

BLAST of IVF0008102 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68450.1	2.8e-11	34.44	VQ motif-containing protein	[more]
AT3G18360.1	2.4e-10	51.72	VQ motif-containing protein	[more]
AT1G21326.1	4.5e-09	42.68	VQ motif-containing protein	[more]
AT3G18690.1	1.7e-08	40.28	MAP kinase substrate 1	[more]
AT1G21320.1	1.6e-06	31.82	nucleotide binding;nucleic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 39..66 e-value: 2.1E-12 score: 46.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..94
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 7..95
IPR039833	VQ motif-containing protein 8, chloroplastic	PANTHER	PTHR33143:SF42	VQ MOTIF-CONTAINING PROTEIN 8, CHLOROPLASTIC	coord: 7..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0008102.1	IVF0008102.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007276	gamete generation
biological_process	GO:0000466	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0051302	regulation of cell division
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0070545	PeBoW complex
cellular_component	GO:0030687	preribosome, large subunit precursor
molecular_function	GO:0043021	ribonucleoprotein complex binding