IVF0008084 (gene) Melon (IVF77) v1

Overview


Name	IVF0008084
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Arabinogalactan peptide 23-like
Location	chr08: 17011681 .. 17011869 (-)
RNA-Seq Expression	IVF0008084
Synteny	IVF0008084

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGAAGAACTTTGCCTGTGCCGCCTTCATCGCTGTTGTCGCCTCCCTGAGCATGGTTTTGGCCTCTGATGAAGCAGCATCCCCCGCTCCCGGCCCATCCAGCGGTGTTTCCGCTACTTTGCCCGTCGTCGGGACATTGCTAGGTGCATCTGCTGCCTCTCTCATTGCTTACTGCCTTCAGTAA

mRNA sequence

ATGGAAATGAAGAACTTTGCCTGTGCCGCCTTCATCGCTGTTGTCGCCTCCCTGAGCATGGTTTTGGCCTCTGATGAAGCAGCATCCCCCGCTCCCGGCCCATCCAGCGGTGTTTCCGCTACTTTGCCCGTCGTCGGGACATTGCTAGGTGCATCTGCTGCCTCTCTCATTGCTTACTGCCTTCAGTAA

Coding sequence (CDS)

ATGGAAATGAAGAACTTTGCCTGTGCCGCCTTCATCGCTGTTGTCGCCTCCCTGAGCATGGTTTTGGCCTCTGATGAAGCAGCATCCCCCGCTCCCGGCCCATCCAGCGGTGTTTCCGCTACTTTGCCCGTCGTCGGGACATTGCTAGGTGCATCTGCTGCCTCTCTCATTGCTTACTGCCTTCAGTAA

Protein sequence

MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYCLQ

Homology

[Close]

BLAST of IVF0008084 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 7.4e-07
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          MEMK  AC    A  AS++ V+A++E  +PAPGP+S  SA LP +G+L+GAS  SL +Y 
Sbjct: 1  MEMKKIACGVLFA-AASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of IVF0008084 vs. ExPASy TrEMBL
Match: A0A5D3E271 (Arabinogalactan peptide 23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001050 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.2e-21
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC
Sbjct: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 62

[Close]

BLAST of IVF0008084 vs. ExPASy TrEMBL
Match: A0A059DIY4 (Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02403 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-07
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          M+MK  +CA  +A  AS+S VLASD++ +PAPGPSSG SA LPV G+L+GAS  S  AY 
Sbjct: 34 MDMKKISCAVLVA-AASMSAVLASDDSPAPAPGPSSGASAALPVFGSLVGASVVSFFAYY 93

Query: 61 LQ 63
          LQ
Sbjct: 94 LQ 94

[Close]

BLAST of IVF0008084 vs. ExPASy TrEMBL
Match: A0A2K1ZXB0 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G056200 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.5e-07
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          ME+K  +CA  + V AS+S  LA+DE ++PAP P+SG SATLPVVG+L+GAS  S  AY 
Sbjct: 1  MELKKISCAVLV-VAASMSAALAADEISAPAPSPTSGASATLPVVGSLIGASLVSFFAYY 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 61

[Close]

BLAST of IVF0008084 vs. ExPASy TrEMBL
Match: A0A200QP69 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1779g40 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.0e-06
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          M+MK  +CA  IAV AS++  LA+DEA +PAPGP+S    T+PV+G+L+GAS  S  A+ 
Sbjct: 1  MDMKKISCAVLIAVAASMNAALAADEAHAPAPGPASNAMTTMPVIGSLVGASLVSFFAFY 60

Query: 61 LQ 63
          +Q
Sbjct: 61 MQ 62

[Close]

BLAST of IVF0008084 vs. ExPASy TrEMBL
Match: A0A6V7PL33 (Uncharacterized protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS14569 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-06
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 1   MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
           MEMK  ACAA +A  AS +  LA+D AA+PAPGP+SG  A  P VGT++GA+  S +AYC
Sbjct: 75  MEMKKIACAALVA-AASATAALANDAAAAPAPGPASGALAAAPAVGTVVGAALLSFLAYC 134

Query: 61  L 62
           L
Sbjct: 135 L 134

[Close]

BLAST of IVF0008084 vs. NCBI nr
Match: KAA0035760.1 (arabinogalactan peptide 23-like [Cucumis melo var. makuwa] >TYK29859.1 arabinogalactan peptide 23-like [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (278), Expect = 1.22e-30
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC
Sbjct: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60

Query: 61 LQ 62
          LQ
Sbjct: 61 LQ 62

[Close]

BLAST of IVF0008084 vs. NCBI nr
Match: KAE8649766.1 (hypothetical protein Csa_011936, partial [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 6.93e-25
Identity = 54/58 (93.10%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 5  NFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYCLQ 62
          NFACAAFI V ASLSMVLASDEAASPAPGPSS  SATLPVVGTLLGASAASLIAYCLQ
Sbjct: 1  NFACAAFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCLQ 58

[Close]

BLAST of IVF0008084 vs. NCBI nr
Match: PNT29922.1 (hypothetical protein POPTR_006G056200 [Populus trichocarpa])

HSP 1 Score: 65.1 bits (157), Expect = 3.43e-12
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          ME+K  +CA  + V AS+S  LA+DE ++PAP P+SG SATLPVVG+L+GAS  S  AY 
Sbjct: 1  MELKKISCAVLV-VAASMSAALAADEISAPAPSPTSGASATLPVVGSLIGASLVSFFAYY 60

Query: 61 LQ 62
          LQ
Sbjct: 61 LQ 61

[Close]

BLAST of IVF0008084 vs. NCBI nr
Match: KCW90250.1 (hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis])

HSP 1 Score: 65.9 bits (159), Expect = 3.89e-12
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          M+MK  +CA  +A  AS+S VLASD++ +PAPGPSSG SA LPV G+L+GAS  S  AY 
Sbjct: 34 MDMKKISCAVLVAA-ASMSAVLASDDSPAPAPGPSSGASAALPVFGSLVGASVVSFFAYY 93

Query: 61 LQ 62
          LQ
Sbjct: 94 LQ 94

[Close]

BLAST of IVF0008084 vs. NCBI nr
Match: OVA12266.1 (hypothetical protein BVC80_1779g40 [Macleaya cordata])

HSP 1 Score: 63.5 bits (153), Expect = 1.43e-11
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          M+MK  +CA  IAV AS++  LA+DEA +PAPGP+S    T+PV+G+L+GAS  S  A+ 
Sbjct: 1  MDMKKISCAVLIAVAASMNAALAADEAHAPAPGPASNAMTTMPVIGSLVGASLVSFFAFY 60

Query: 61 LQ 62
          +Q
Sbjct: 61 MQ 62

[Close]

BLAST of IVF0008084 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 53.9 bits (128), Expect = 5.3e-08
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          MEMK  AC    A  AS++ V+A++E  +PAPGP+S  SA LP +G+L+GAS  SL +Y 
Sbjct: 1  MEMKKIACGVLFA-AASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of IVF0008084 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 4.2e-05
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGP-SSGVSATLPVVGTLLGASAASLIAY 60
          MEMK  AC    A  AS++ V+A+ E  +PAPGP +SG S  +P +G+L+GAS  SL AY
Sbjct: 1  MEMKKIACGVVFA-AASMTAVMAA-EVGAPAPGPAASGASVAVPALGSLVGASLVSLFAY 60

Query: 61 CL 62
           L
Sbjct: 61 YL 60

[Close]

BLAST of IVF0008084 vs. TAIR 10
Match: AT3G20865.1 (arabinogalactan protein 40 )

HSP 1 Score: 41.6 bits (96), Expect = 2.7e-04
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          MEMKN   A FI+ V   S+  A+ E+ +P+PG SS  +   PVVG+++ AS ++ +A  
Sbjct: 1  MEMKNIFVALFISAVLVSSVSAATMESPAPSPGASSASTVAFPVVGSIVAASLSAFLALL 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 62

The following BLAST results are available for this feature:

BLAST of IVF0008084 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S2W4	7.4e-07	50.82	Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2	[more]

BLAST of IVF0008084 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E271	3.2e-21	100.00	Arabinogalactan peptide 23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A059DIY4	2.0e-07	59.68	Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02...	[more]
A0A2K1ZXB0	3.5e-07	58.06	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G056200 PE=4 ...	[more]
A0A200QP69	1.0e-06	51.61	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1779g40 PE=4 SV=1	[more]
A0A6V7PL33	1.7e-06	57.38	Uncharacterized protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS...	[more]

BLAST of IVF0008084 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035760.1	1.22e-30	100.00	arabinogalactan peptide 23-like [Cucumis melo var. makuwa] >TYK29859.1 arabinoga...	[more]
KAE8649766.1	6.93e-25	93.10	hypothetical protein Csa_011936, partial [Cucumis sativus]	[more]
PNT29922.1	3.43e-12	58.06	hypothetical protein POPTR_006G056200 [Populus trichocarpa]	[more]
KCW90250.1	3.89e-12	59.68	hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis]	[more]
OVA12266.1	1.43e-11	51.61	hypothetical protein BVC80_1779g40 [Macleaya cordata]	[more]

BLAST of IVF0008084 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57690.1	5.3e-08	50.82	arabinogalactan protein 23	[more]
AT2G41905.1	4.2e-05	50.00	BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3...	[more]
AT3G20865.1	2.7e-04	41.94	arabinogalactan protein 40	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044702	Arabinogalactan protein 23/40	PANTHER	PTHR34672	POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0008084.1	IVF0008084.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane