IVF0008062 (gene) Melon (IVF77) v1

Overview


Name	IVF0008062
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr04: 5590562 .. 5590921 (+)
RNA-Seq Expression	IVF0008062
Synteny	IVF0008062

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCAGGAGGATGTATGCGTATCACGACCTACTCGCATGTCAGACGGTAAGGCTAGATTGAGCGGATCGAAGAGAAAGAGGGGAAGCCAACGAGAGGGTGAGCTTAAAGTCATACATATGGCTCTTGAGTGTATGAATGACCAACTCAGGACGATTGCCGAGTGGCCTGCACGCACCCTTACCAATGACACTCATGTTTGCCAGGAATTCTTACGCCTATTGCGTAAGATGCCTAACCTAAGCAGTTTGGATAGAGCGTTGTGCCAAAGGGAGTTGATGTCTCATATAGACGACATGCGGGGTTTCGTAGAGATGACTGACGATGAGAGGAAGAACTTTTGTAGAGTCCTCCTATGA

mRNA sequence

ATGTCCCAGGAGGATGTATGCGTATCACGACCTACTCGCATGTCAGACGGTAAGGCTAGATTGAGCGGATCGAAGAGAAAGAGGGGAAGCCAACGAGAGGGTGAGCTTAAAGTCATACATATGGCTCTTGAGTGTATGAATGACCAACTCAGGACGATTGCCGAGTGGCCTGCACGCACCCTTACCAATGACACTCATGTTTGCCAGGAATTCTTACGCCTATTGCGTAAGATGCCTAACCTAAGCAGTTTGGATAGAGCGTTGTGCCAAAGGGAGTTGATGTCTCATATAGACGACATGCGGGGTTTCGTAGAGATGACTGACGATGAGAGGAAGAACTTTTGTAGAGTCCTCCTATGA

Coding sequence (CDS)

ATGTCCCAGGAGGATGTATGCGTATCACGACCTACTCGCATGTCAGACGGTAAGGCTAGATTGAGCGGATCGAAGAGAAAGAGGGGAAGCCAACGAGAGGGTGAGCTTAAAGTCATACATATGGCTCTTGAGTGTATGAATGACCAACTCAGGACGATTGCCGAGTGGCCTGCACGCACCCTTACCAATGACACTCATGTTTGCCAGGAATTCTTACGCCTATTGCGTAAGATGCCTAACCTAAGCAGTTTGGATAGAGCGTTGTGCCAAAGGGAGTTGATGTCTCATATAGACGACATGCGGGGTTTCGTAGAGATGACTGACGATGAGAGGAAGAACTTTTGTAGAGTCCTCCTATGA

Protein sequence

MSQEDVCVSRPTRMSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDMRGFVEMTDDERKNFCRVLL

Homology

[Close]

BLAST of IVF0008062 vs. ExPASy TrEMBL
Match: A0A5A7U7C8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00620 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 8.0e-53
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 14  MSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLR 73
           MSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLR
Sbjct: 1   MSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLR 60

Query: 74  LLRKMPNLSSLDRALCQRELMSHIDDMRGFVEMTDDERKNFCRVLL 120
           LLRKMPNLSSLDRALCQRELMSHIDDMRGFVEMTDDERKNFCRVLL
Sbjct: 61  LLRKMPNLSSLDRALCQRELMSHIDDMRGFVEMTDDERKNFCRVLL 106

[Close]

BLAST of IVF0008062 vs. ExPASy TrEMBL
Match: A0A5A7U4I8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001180 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.2e-41
Identity = 86/119 (72.27%), Postives = 99/119 (83.19%), Query Frame = 0


Query: 1   MSQEDVCVSRPTRMSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPART 60
           MSQEDV  SRP+  S G+ R SGSKRKR SQ++GE++VIHMA+EC NDQLRTIAEWPAR 
Sbjct: 96  MSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAIECTNDQLRTIAEWPARA 155

Query: 61  LTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDMRGFVEMTDDERKNFCRVLL 120
           L NDTHV QE LRLL  MP L+SLDR LCQR L+S +DDMRGF++M DDER+NFCRVLL
Sbjct: 156 LANDTHVRQELLRLLHVMPELTSLDRVLCQRHLLSRMDDMRGFIQMIDDERQNFCRVLL 214

[Close]

BLAST of IVF0008062 vs. ExPASy TrEMBL
Match: A0A5A7U9D5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00780 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.3e-39
Identity = 84/119 (70.59%), Postives = 100/119 (84.03%), Query Frame = 0


Query: 1   MSQEDVCVSRPTRMSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPART 60
           MSQEDV  S+P   S+ +AR S  KRKRGSQ++GE+KVIHMAL+CMNDQL+ I EW AR 
Sbjct: 71  MSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARA 130

Query: 61  LTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDMRGFVEMTDDERKNFCRVLL 120
           L N+THV QEF+RLLR+M  LS+LDRALCQR LMSH+DDM GFV+MT+DER+NFCRVLL
Sbjct: 131 LANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGFVQMTNDERQNFCRVLL 189

[Close]

BLAST of IVF0008062 vs. ExPASy TrEMBL
Match: A0A5D3BQI7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00550 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 5.1e-39
Identity = 86/119 (72.27%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 1   MSQEDVCVSRPTRMSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPART 60
           +SQ+DV  S+P   SDG+ R S SKRKRGSQREGEL VI+MAL+CMNDQLRTI EWP R 
Sbjct: 249 ISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQLRTIIEWPTRP 308

Query: 61  LTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDMRGFVEMTDDERKNFCRVLL 120
             N+T V QEFLRLL +MP+LSSLDR LCQR+LM  IDDMR FVEMTD+ERKNFCRV L
Sbjct: 309 FANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRSFVEMTDEERKNFCRVFL 367

[Close]

BLAST of IVF0008062 vs. ExPASy TrEMBL
Match: A0A5A7T091 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9475G00160 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 6.8e-36
Identity = 77/119 (64.71%), Postives = 96/119 (80.67%), Query Frame = 0


Query: 1   MSQEDVCVSRPTRMSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPART 60
           +SQ+DVC SRP+R S+G+   SGSKRKRGSQR+ EL+ IH+AL+  N+QLR IAEWPAR 
Sbjct: 234 ISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARN 293

Query: 61  LTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDMRGFVEMTDDERKNFCRVLL 120
           L ND H+  EF R+LR+MP L+SLDRAL QR L+S +DD+RGFV M +DER+ FCRVLL
Sbjct: 294 LANDNHMRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLL 352

[Close]

BLAST of IVF0008062 vs. NCBI nr
Match: KAA0051652.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ97958.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 216 bits (549), Expect = 2.12e-70
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 14  MSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLR 73
           MSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLR
Sbjct: 1   MSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLR 60

Query: 74  LLRKMPNLSSLDRALCQRELMSHIDDMRGFVEMTDDERKNFCRVLL 119
           LLRKMPNLSSLDRALCQRELMSHIDDMRGFVEMTDDERKNFCRVLL
Sbjct: 61  LLRKMPNLSSLDRALCQRELMSHIDDMRGFVEMTDDERKNFCRVLL 106

[Close]

BLAST of IVF0008062 vs. NCBI nr
Match: KAA0050190.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 177 bits (449), Expect = 1.32e-53
Identity = 86/119 (72.27%), Postives = 99/119 (83.19%), Query Frame = 0


Query: 1   MSQEDVCVSRPTRMSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPART 60
           MSQEDV  SRP+  S G+ R SGSKRKR SQ++GE++VIHMA+EC NDQLRTIAEWPAR 
Sbjct: 96  MSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAIECTNDQLRTIAEWPARA 155

Query: 61  LTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDMRGFVEMTDDERKNFCRVLL 119
           L NDTHV QE LRLL  MP L+SLDR LCQR L+S +DDMRGF++M DDER+NFCRVLL
Sbjct: 156 LANDTHVRQELLRLLHVMPELTSLDRVLCQRHLLSRMDDMRGFIQMIDDERQNFCRVLL 214

[Close]

BLAST of IVF0008062 vs. NCBI nr
Match: KAA0050806.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08539.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 171 bits (433), Expect = 1.65e-51
Identity = 84/119 (70.59%), Postives = 100/119 (84.03%), Query Frame = 0


Query: 1   MSQEDVCVSRPTRMSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPART 60
           MSQEDV  S+P   S+ +AR S  KRKRGSQ++GE+KVIHMAL+CMNDQL+ I EW AR 
Sbjct: 71  MSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARA 130

Query: 61  LTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDMRGFVEMTDDERKNFCRVLL 119
           L N+THV QEF+RLLR+M  LS+LDRALCQR LMSH+DDM GFV+MT+DER+NFCRVLL
Sbjct: 131 LANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGFVQMTNDERQNFCRVLL 189

[Close]

BLAST of IVF0008062 vs. NCBI nr
Match: KAA0033884.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 170 bits (430), Expect = 6.09e-49
Identity = 86/119 (72.27%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 1   MSQEDVCVSRPTRMSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPART 60
           +SQ+DV  S+P   SDG+ R S SKRKRGSQREGEL VI+MAL+CMNDQLRTI EWP R 
Sbjct: 249 ISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQLRTIIEWPTRP 308

Query: 61  LTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDMRGFVEMTDDERKNFCRVLL 119
             N+T V QEFLRLL +MP+LSSLDR LCQR+LM  IDDMR FVEMTD+ERKNFCRV L
Sbjct: 309 FANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRSFVEMTDEERKNFCRVFL 367

[Close]

BLAST of IVF0008062 vs. NCBI nr
Match: KAA0053857.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 156 bits (394), Expect = 2.70e-46
Identity = 77/119 (64.71%), Postives = 95/119 (79.83%), Query Frame = 0


Query: 1   MSQEDVCVSRPTRMSDGKARLSGSKRKRGSQREGELKVIHMALECMNDQLRTIAEWPART 60
           +SQ+DV  SRP+R SDG+   SGSKRKRGSQR+ EL+ IH+AL+  N+QLR IA+WPAR 
Sbjct: 18  ISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALDQTNEQLREIAQWPARN 77

Query: 61  LTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHIDDMRGFVEMTDDERKNFCRVLL 119
           L ND HV  EF R+LR+MP L+SLDRAL QR L+S +DD+RGFV M +DER+ FCRVLL
Sbjct: 78  LANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLL 136

The following BLAST results are available for this feature:

BLAST of IVF0008062 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0008062 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U7C8	8.0e-53	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U4I8	3.2e-41	72.27	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U9D5	2.3e-39	70.59	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BQI7	5.1e-39	72.27	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T091	6.8e-36	64.71	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0008062 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051652.1	2.12e-70	100.00	retrotransposon protein [Cucumis melo var. makuwa] >TYJ97958.1 retrotransposon p...	[more]
KAA0050190.1	1.32e-53	72.27	retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon p...	[more]
KAA0050806.1	1.65e-51	70.59	retrotransposon protein [Cucumis melo var. makuwa] >TYK08539.1 retrotransposon p...	[more]
KAA0033884.1	6.09e-49	72.27	retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon p...	[more]
KAA0053857.1	2.70e-46	64.71	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0008062 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0008062.1	IVF0008062.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding