IVF0008024 (gene) Melon (IVF77) v1

Overview
NameIVF0008024
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr01: 3893767 .. 3895170 (+)
RNA-Seq ExpressionIVF0008024
SyntenyIVF0008024
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATTAAGAAGCGGAAGCTTGTGCGTTACCAAACAACGGCCATAGAATATGCTCTTAGCTGTTATCAACTTTGCCGGGAACTTCATCGGAGCCGGAGCACCAATCACTGCTTCTCAACTCTAACCATTTCAATTCCTTCTCTCTCTCTCTCTCTCTCTCTACCTTCTTCTTCTTCTTCCTCTTCCCGGTATCTTCTCTCTTTCTTCTTCGCCTCCGCTTTAATTTGACTTCAATTTCTTCGTCTCCTTTACTCACTTCCCTCGTCTTCTGCACCTCTGATTCGCCTGCACCAATTCCGAACCCTGACTTGTAATTCACGGCTGTGATTGATTTCCAGCGGAATTCTGTGCTTCCACGTCAAATTACTACACCTCTGTGATTTTCTAGGGCTTGAAACTCCAAGGCTTTGGCAGTGAAGCGGAGGTAGATTTTTTTTTTCCTTTCTCATGTCTAACTCAATATTATTGTTGTAATTTTTTAGTGGGGGATAAGTATGCGGATATTTTTCTCTTGTTGCTGAAATTGAAGTCGGAGTTTTGTGATTTGGATCTTAATTATTTTGATCCGTACTGGAGCCGGAGAATCTAGTTACTCAGCTCAAACTGAGCCTACTTGGACCGTATGTTTTGGATGAAACTAGTAGCTAATTGTTTTTCTTCTCTTTATAAGCTTAGTTGGAGTGAGAGTTTTACTTTGAACACCGTTTTCTCTTTGTTCGCCTCGAAGATTTCATCGGATGGTGTGCAAGTGGTGGATTATTGTGCACTGAACTCGATTTCCATGTCTACTCTTTTTTCTATTAAAAAATTTTGGTCATTAATTGAGAATTAAGATTATTTCCATGTATTGAATAATATATATCTTATCCCACTTCCCAAAACTTTTAAATGTTCAATATTTTGATTTTAGTACGGTATATTTTCGAAGTCAATCCTTCTTCTGTATGGTAAAGTATTATAGTCTGAATCAACTCTGACACTCTAGTTTCCATTTTTTTTTTTTGGGTTCTTGGGCTAAACTGAAATTTCCACTTTTCTTGAGTATCAACACATTTTCATATCAGGAACAGCTTGGGGTTATATAATGCATGAATTTGTGGATGCTGAGTATGCATGAAATCTTCACGTCTTCTTTATGACCATGACTCTGAAGTCTGAAGTAAATTATCAACGCACACAATGACACAATCATTCTCGAATAACAATAATAAATTGTTTGTTTGATATCTGGCCTCTTGAATTTTGGTTATATGGAGGCAGTCCAAAATGACTTTTAGCAATTTTCCATTTCGTTGCATTTCTGACCAGGATTCAGTATACAGCTAGACGTGGCGTGGCGTCCAGTTTCTGTATCAATCAAAGTGTGGAGAATAAGAGTTCTTTAGAGCTCTCTGGCTTATGA

mRNA sequence

ATGGCATTAAGAAGCGGAAGCTTCTGTTATCAACTTTGCCGGGAACTTCATCGGAGCCGGAGCACCAATCACTGCTTCTCAACTCTAACCATTTCAATTCCTTCTCTCTCTCTCTCTCTCTCTCTACCTTCTTCTTCTTCTTCCTCTTCCCGGTATCTTCTCTCTTTCTTCTTCGCCTCCGCTTTGGCAGTGAAGCGGAGGATTCAGTATACAGCTAGACGTGGCGTGGCGTCCAGTTTCTGTATCAATCAAAGTGTGGAGAATAAGAGTTCTTTAGAGCTCTCTGGCTTATGA

Coding sequence (CDS)

ATGGCATTAAGAAGCGGAAGCTTCTGTTATCAACTTTGCCGGGAACTTCATCGGAGCCGGAGCACCAATCACTGCTTCTCAACTCTAACCATTTCAATTCCTTCTCTCTCTCTCTCTCTCTCTCTACCTTCTTCTTCTTCTTCCTCTTCCCGGTATCTTCTCTCTTTCTTCTTCGCCTCCGCTTTGGCAGTGAAGCGGAGGATTCAGTATACAGCTAGACGTGGCGTGGCGTCCAGTTTCTGTATCAATCAAAGTGTGGAGAATAAGAGTTCTTTAGAGCTCTCTGGCTTATGA

Protein sequence

MALRSGSFCYQLCRELHRSRSTNHCFSTLTISIPSLSLSLSLPSSSSSSSRYLLSFFFASALAVKRRIQYTARRGVASSFCINQSVENKSSLELSGL
Homology
[Close]
BLAST of IVF0008024 vs. ExPASy TrEMBL
Match: A0A0A0K1U7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G033360 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 8.6e-21
Identity = 73/136 (53.68%), Postives = 81/136 (59.56%), Query Frame = 0 

Query: 1   MALRSGSFCYQLCRELHRSRSTNHCFSTLTISIPSLSL--------------SLSLPSSS 60
           MALRSGSFCYQL RELHRSRSTNHCFSTLTISIPSLS+               +S   SS
Sbjct: 1   MALRSGSFCYQLYRELHRSRSTNHCFSTLTISIPSLSIFFFFFFLLLFFFLFPVSSLFSS 60

Query: 61  SSSSRYLLSFFF-------------------------ASALAVKRRIQYTARRGVASSFC 98
           SS  ++  +FF                          +  LA+ RRIQYTARR V SSFC
Sbjct: 61  SSELQFDFNFFVSLPTSLVFCTSDSPAPIPNPDLASNSKPLALNRRIQYTARRDVGSSFC 120

[Close]
BLAST of IVF0008024 vs. NCBI nr
Match: KGN43428.1 (hypothetical protein Csa_020467 [Cucumis sativus])

HSP 1 Score: 108 bits (271), Expect = 4.83e-28
Identity = 73/136 (53.68%), Postives = 81/136 (59.56%), Query Frame = 0 

Query: 1   MALRSGSFCYQLCRELHRSRSTNHCFSTLTISIPSLSL--------------SLSLPSSS 60
           MALRSGSFCYQL RELHRSRSTNHCFSTLTISIPSLS+               +S   SS
Sbjct: 1   MALRSGSFCYQLYRELHRSRSTNHCFSTLTISIPSLSIFFFFFFLLLFFFLFPVSSLFSS 60

Query: 61  SSSSRYLLSFFFA-------------------------SALAVKRRIQYTARRGVASSFC 97
           SS  ++  +FF +                           LA+ RRIQYTARR V SSFC
Sbjct: 61  SSELQFDFNFFVSLPTSLVFCTSDSPAPIPNPDLASNSKPLALNRRIQYTARRDVGSSFC 120

The following BLAST results are available for this feature:
BLAST of IVF0008024 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0008024 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1U78.6e-2153.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G033360 PE=4 SV=1[more]
BLAST of IVF0008024 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43428.14.83e-2853.68hypothetical protein Csa_020467 [Cucumis sativus][more]
BLAST of IVF0008024 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0008024.1IVF0008024.1mRNA