IVF0008017 (gene) Melon (IVF77) v1

Overview
NameIVF0008017
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase, RNA-dependent DNA polymerase
Locationchr07: 13610733 .. 13611133 (+)
RNA-Seq ExpressionIVF0008017
SyntenyIVF0008017
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAATGTCCTACCCAACTCCTCTGTTCTCGACACACTTGCCACAAATTTCTCCAATCCACTATTGAATCAAGTCTTGAATCAACTAATTACAACAACAAAGCCAGATCAAAGAAATTATTTGCTATGGCAGACACTGGCTCTCCCTATTCTAAGAGCGTACAAATTAGAAGGGCACCTTACTGGTTAGAAACCTCGTCCTCTAAAGTTCATAACCACATCTAATGTACTAGTGCTTCAGCCATAGAAGAAAGAGATAGTGCACAATAAAGAGCTTCATCAAGCTCGTCGACTCCTGTAATCGTGAATCCTCTATTTGAACAATGGGTAACGACTGTCTTAGTTTTACTTGGCTGGCTGTATAACTCAATGACGCCTGAAGTGGCCGTTCATTTGTAG

mRNA sequence

ATGGCCAATGTCCTACCCAACTCCTCTGTTCTCGACACACTTGCCACAAATTTCTCCAATCCACTATTGAATCAAGTCTTGAATCAACTAATTACAACAACAAAGCCAGATCAAAGAAATTATTTGCTATGGCAGACACTGGCTCTCCCTATTCTAAGAGCGTACAAATTAGAAGGGCACCTTACTGCTTCATCAAGCTCGTCGACTCCTGTAATCGTGAATCCTCTATTTGAACAATGGGTAACGACTGTCTTAGTTTTACTTGGCTGGCTGTATAACTCAATGACGCCTGAAGTGGCCGTTCATTTGTAG

Coding sequence (CDS)

ATGGCCAATGTCCTACCCAACTCCTCTGTTCTCGACACACTTGCCACAAATTTCTCCAATCCACTATTGAATCAAGTCTTGAATCAACTAATTACAACAACAAAGCCAGATCAAAGAAATTATTTGCTATGGCAGACACTGGCTCTCCCTATTCTAAGAGCGTACAAATTAGAAGGGCACCTTACTGCTTCATCAAGCTCGTCGACTCCTGTAATCGTGAATCCTCTATTTGAACAATGGGTAACGACTGTCTTAGTTTTACTTGGCTGGCTGTATAACTCAATGACGCCTGAAGTGGCCGTTCATTTGTAG

Protein sequence

MANVLPNSSVLDTLATNFSNPLLNQVLNQLITTTKPDQRNYLLWQTLALPILRAYKLEGHLTASSSSSTPVIVNPLFEQWVTTVLVLLGWLYNSMTPEVAVHL
Homology
[Close]
BLAST of IVF0008017 vs. ExPASy TrEMBL
Match: A0A5A7VCS1 (Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00430 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.3e-26
Identity = 77/141 (54.61%), Postives = 87/141 (61.70%), Query Frame = 0 

Query: 1   MANVL-PNSSVLDTLATNFSNPLLNQVLNQLITTTKPDQRNYLLWQTLALPILRAYKLEG 60
           MAN   PN SVLDT AT+F+NP LNQ+LNQL TT K D+ NYLLW+TLALPIL+ YKLEG
Sbjct: 1   MANATPPNFSVLDTPATSFTNPPLNQILNQL-TTIKLDRSNYLLWKTLALPILKGYKLEG 60

Query: 61  HLT-------------------------------------ASSSSSTPVIVNPLFEQWVT 104
           HLT                                     ASSS S P I+NPLFEQW+ 
Sbjct: 61  HLTGEKPCPEKFVTITSSAGSNGSVTEEGDDREQRAPKQIASSSMSAPAIINPLFEQWIM 120

[Close]
BLAST of IVF0008017 vs. ExPASy TrEMBL
Match: A0A1S4E1U9 (uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.6e-25
Identity = 72/132 (54.55%), Postives = 84/132 (63.64%), Query Frame = 0 

Query: 1   MANVLPNSSVLDTLATNFSNPLLNQVLNQLITTTKPDQRNYLLWQTLALPILRAYKLEGH 60
           MAN  P ++     +  FSNP LNQ+LNQL TT K D++NYLLW+TLALPIL+ YKLEGH
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQL-TTVKLDRKNYLLWKTLALPILKDYKLEGH 60

Query: 61  LTA-----------------------------SSSSSTPVIVNPLFEQWVTTVLVLLGWL 104
           LTA                             +SSS TP IVNPLFEQWVTT L+LLGWL
Sbjct: 61  LTAETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWL 120

[Close]
BLAST of IVF0008017 vs. ExPASy TrEMBL
Match: A0A1S4E1U6 (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.6e-25
Identity = 72/132 (54.55%), Postives = 84/132 (63.64%), Query Frame = 0 

Query: 1   MANVLPNSSVLDTLATNFSNPLLNQVLNQLITTTKPDQRNYLLWQTLALPILRAYKLEGH 60
           MAN  P ++     +  FSNP LNQ+LNQL TT K D++NYLLW+TLALPIL+ YKLEGH
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQL-TTVKLDRKNYLLWKTLALPILKDYKLEGH 60

Query: 61  LTA-----------------------------SSSSSTPVIVNPLFEQWVTTVLVLLGWL 104
           LTA                             +SSS TP IVNPLFEQWVTT L+LLGWL
Sbjct: 61  LTAETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWL 120

[Close]
BLAST of IVF0008017 vs. ExPASy TrEMBL
Match: A0A1S4E1V2 (uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.6e-25
Identity = 72/132 (54.55%), Postives = 84/132 (63.64%), Query Frame = 0 

Query: 1   MANVLPNSSVLDTLATNFSNPLLNQVLNQLITTTKPDQRNYLLWQTLALPILRAYKLEGH 60
           MAN  P ++     +  FSNP LNQ+LNQL TT K D++NYLLW+TLALPIL+ YKLEGH
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQL-TTVKLDRKNYLLWKTLALPILKDYKLEGH 60

Query: 61  LTA-----------------------------SSSSSTPVIVNPLFEQWVTTVLVLLGWL 104
           LTA                             +SSS TP IVNPLFEQWVTT L+LLGWL
Sbjct: 61  LTAETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWL 120

[Close]
BLAST of IVF0008017 vs. ExPASy TrEMBL
Match: A0A1S4E2K3 (uncharacterized protein LOC107991581 isoform X5 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.6e-25
Identity = 72/132 (54.55%), Postives = 84/132 (63.64%), Query Frame = 0 

Query: 1   MANVLPNSSVLDTLATNFSNPLLNQVLNQLITTTKPDQRNYLLWQTLALPILRAYKLEGH 60
           MAN  P ++     +  FSNP LNQ+LNQL TT K D++NYLLW+TLALPIL+ YKLEGH
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQL-TTVKLDRKNYLLWKTLALPILKDYKLEGH 60

Query: 61  LTA-----------------------------SSSSSTPVIVNPLFEQWVTTVLVLLGWL 104
           LTA                             +SSS TP IVNPLFEQWVTT L+LLGWL
Sbjct: 61  LTAETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWL 120

[Close]
BLAST of IVF0008017 vs. NCBI nr
Match: KAA0066132.1 (putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa] >TYK15175.1 putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (318), Expect = 6.73e-35
Identity = 77/141 (54.61%), Postives = 87/141 (61.70%), Query Frame = 0 

Query: 1   MANVLP-NSSVLDTLATNFSNPLLNQVLNQLITTTKPDQRNYLLWQTLALPILRAYKLEG 60
           MAN  P N SVLDT AT+F+NP LNQ+LNQL TT K D+ NYLLW+TLALPIL+ YKLEG
Sbjct: 1   MANATPPNFSVLDTPATSFTNPPLNQILNQL-TTIKLDRSNYLLWKTLALPILKGYKLEG 60

Query: 61  HLT-------------------------------------ASSSSSTPVIVNPLFEQWVT 103
           HLT                                     ASSS S P I+NPLFEQW+ 
Sbjct: 61  HLTGEKPCPEKFVTITSSAGSNGSVTEEGDDREQRAPKQIASSSMSAPAIINPLFEQWIM 120

[Close]
BLAST of IVF0008017 vs. NCBI nr
Match: KAA0045271.1 (uncharacterized protein E6C27_scaffold316G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (306), Expect = 7.06e-33
Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 0 

Query: 1  MANVLPNSSVLDTLATNFSNPLLNQVLNQLITTTKPDQRNYLLWQTLALPILRAYKLEGH 60
          MANVLPNSSVLDTLATNFSNPLLNQVLNQLITTTKPDQRNYLLWQTLALPILR YKLEGH
Sbjct: 1  MANVLPNSSVLDTLATNFSNPLLNQVLNQLITTTKPDQRNYLLWQTLALPILRGYKLEGH 60

Query: 61 LTASSSS 67
          LT  +++
Sbjct: 61 LTGFTNA 67

[Close]
BLAST of IVF0008017 vs. NCBI nr
Match: XP_016902205.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo])

HSP 1 Score: 123 bits (309), Expect = 1.11e-31
Identity = 72/132 (54.55%), Postives = 84/132 (63.64%), Query Frame = 0 

Query: 1   MANVLPNSSVLDTLATNFSNPLLNQVLNQLITTTKPDQRNYLLWQTLALPILRAYKLEGH 60
           MAN  P ++     +  FSNP LNQ+LNQL TT K D++NYLLW+TLALPIL+ YKLEGH
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQL-TTVKLDRKNYLLWKTLALPILKDYKLEGH 60

Query: 61  LTA-----------------------------SSSSSTPVIVNPLFEQWVTTVLVLLGWL 103
           LTA                             +SSS TP IVNPLFEQWVTT L+LLGWL
Sbjct: 61  LTAETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWL 120

[Close]
BLAST of IVF0008017 vs. NCBI nr
Match: XP_016902204.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X4 [Cucumis melo])

HSP 1 Score: 123 bits (309), Expect = 2.41e-31
Identity = 72/132 (54.55%), Postives = 84/132 (63.64%), Query Frame = 0 

Query: 1   MANVLPNSSVLDTLATNFSNPLLNQVLNQLITTTKPDQRNYLLWQTLALPILRAYKLEGH 60
           MAN  P ++     +  FSNP LNQ+LNQL TT K D++NYLLW+TLALPIL+ YKLEGH
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQL-TTVKLDRKNYLLWKTLALPILKDYKLEGH 60

Query: 61  LTA-----------------------------SSSSSTPVIVNPLFEQWVTTVLVLLGWL 103
           LTA                             +SSS TP IVNPLFEQWVTT L+LLGWL
Sbjct: 61  LTAETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWL 120

[Close]
BLAST of IVF0008017 vs. NCBI nr
Match: XP_016902203.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo])

HSP 1 Score: 123 bits (309), Expect = 3.46e-31
Identity = 72/132 (54.55%), Postives = 84/132 (63.64%), Query Frame = 0 

Query: 1   MANVLPNSSVLDTLATNFSNPLLNQVLNQLITTTKPDQRNYLLWQTLALPILRAYKLEGH 60
           MAN  P ++     +  FSNP LNQ+LNQL TT K D++NYLLW+TLALPIL+ YKLEGH
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQL-TTVKLDRKNYLLWKTLALPILKDYKLEGH 60

Query: 61  LTA-----------------------------SSSSSTPVIVNPLFEQWVTTVLVLLGWL 103
           LTA                             +SSS TP IVNPLFEQWVTT L+LLGWL
Sbjct: 61  LTAETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWL 120

The following BLAST results are available for this feature:
BLAST of IVF0008017 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0008017 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VCS13.3e-2654.61Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. m... [more]
A0A1S4E1U93.6e-2554.55uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S4E1U63.6e-2554.55uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S4E1V23.6e-2554.55uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S4E2K33.6e-2554.55uncharacterized protein LOC107991581 isoform X5 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of IVF0008017 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0066132.16.73e-3554.61putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. mak... [more]
KAA0045271.17.06e-3391.04uncharacterized protein E6C27_scaffold316G00050 [Cucumis melo var. makuwa][more]
XP_016902205.11.11e-3154.55PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo][more]
XP_016902204.12.41e-3154.55PREDICTED: uncharacterized protein LOC107991581 isoform X4 [Cucumis melo][more]
XP_016902203.13.46e-3154.55PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo][more]
BLAST of IVF0008017 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0008017.1IVF0008017.1mRNA