IVF0008000 (gene) Melon (IVF77) v1

Overview
NameIVF0008000
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr07: 11470457 .. 11470762 (+)
RNA-Seq ExpressionIVF0008000
SyntenyIVF0008000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGGAGGAAAAGATGAAGTTGATGAGGATTATGTCTTCAAGTTCATGGACATTTTCATATGTAAGTCTTTGGAGAATGGAATTGAACATATAATCTAGTGGCAAAGACACCTACAACATATGCATTTTCAAAGTCAAAGAAAATTAAACGATTTAGAGTTGAAGATGGACAACACAAACGTAAACAATGAGGCACAATTACATCAACTTAAAAGAAAAATAACAAGACTCAAAATGCAGAATCAGGATTTCCAAAAGCAACTTCTTGCTATGAGGGAGAAAACTGAGGCGATGAGGGAATAG

mRNA sequence

ATGAGAGGAGGAAAAGATGAAGTTGATGAGGATTATGTCTTCAAGTTCATGGACATTTTCATATGTAAGTCTTTGGAGAATGGAATTGAACATATAATCTATCAAAGAAAATTAAACGATTTAGAGTTGAAGATGGACAACACAAACGTAAACAATGAGGCACAATTACATCAACTTAAAAGAAAAATAACAAGACTCAAAATGCAGAATCAGGATTTCCAAAAGCAACTTCTTGCTATGAGGGAGAAAACTGAGGCGATGAGGGAATAG

Coding sequence (CDS)

ATGAGAGGAGGAAAAGATGAAGTTGATGAGGATTATGTCTTCAAGTTCATGGACATTTTCATATGTAAGTCTTTGGAGAATGGAATTGAACATATAATCTATCAAAGAAAATTAAACGATTTAGAGTTGAAGATGGACAACACAAACGTAAACAATGAGGCACAATTACATCAACTTAAAAGAAAAATAACAAGACTCAAAATGCAGAATCAGGATTTCCAAAAGCAACTTCTTGCTATGAGGGAGAAAACTGAGGCGATGAGGGAATAG

Protein sequence

MRGGKDEVDEDYVFKFMDIFICKSLENGIEHIIYQRKLNDLELKMDNTNVNNEAQLHQLKRKITRLKMQNQDFQKQLLAMREKTEAMRE
Homology
BLAST of IVF0008000 vs. ExPASy TrEMBL
Match: A0A5D3C5U6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001830 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.9e-06
Identity = 33/96 (34.38%), Postives = 56/96 (58.33%), Query Frame = 0

Query: 2   RGGKDEVDEDYVFKFMDIFICKSLENGIE------------HIIYQRKLNDLELKMDNTN 61
           R  +D  DE+Y+FKF+D ++CK + NG E            H+  Q++L D E+K+ N N
Sbjct: 102 RKDEDGDDENYIFKFIDDYVCKPMSNGFEDVIQCQSNLQKMHLCCQKQLRDFEVKLQNIN 161

Query: 62  VNNEAQLHQLKRKITRLKMQNQDFQKQLLAMREKTE 86
            +++AQ+  LK ++  L+ QNQ+ + Q+  + E  E
Sbjct: 162 HHHQAQIEGLKAEMQELRSQNQELKVQIHVIMEMIE 197

BLAST of IVF0008000 vs. ExPASy TrEMBL
Match: A0A5A7VEP3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G001430 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.2e-06
Identity = 26/33 (78.79%), Postives = 31/33 (93.94%), Query Frame = 0

Query: 1   MRGGKDEVDEDYVFKFMDIFICKSLENGIEHII 34
           +RGG+DEVD+DY+FKFM+IFICK LENGIE II
Sbjct: 159 IRGGEDEVDKDYIFKFMEIFICKPLENGIEDII 191

BLAST of IVF0008000 vs. ExPASy TrEMBL
Match: A0A5D3BTN1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00190 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.2e-06
Identity = 26/33 (78.79%), Postives = 31/33 (93.94%), Query Frame = 0

Query: 1   MRGGKDEVDEDYVFKFMDIFICKSLENGIEHII 34
           +RGG+DEVD+DY+FKFM+IFICK LENGIE II
Sbjct: 176 IRGGEDEVDKDYIFKFMEIFICKPLENGIEDII 208

BLAST of IVF0008000 vs. ExPASy TrEMBL
Match: A0A5D3D645 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold368G00010 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.5e-06
Identity = 35/92 (38.04%), Postives = 56/92 (60.87%), Query Frame = 0

Query: 5  KDEVDEDYVFKFMDIFICKSLENGIE------------HIIYQRKLNDLELKMDNTNVNN 64
          ++EVD  YVFKF+D FICK LE G E             +  Q++++DLELK+DN + +N
Sbjct: 4  EEEVDAYYVFKFIDKFICKPLERGFEDTFQCQSNLQEMQLRSQKQVSDLELKIDNASASN 63

Query: 65 EAQLHQLKRKITRLKMQNQDFQKQLLAMREKT 85
          +AQ+ Q + ++ +LKMQ +  +  +   + KT
Sbjct: 64 QAQMDQFQVEVKKLKMQIKSSKNIMQPSKSKT 95

BLAST of IVF0008000 vs. ExPASy TrEMBL
Match: A0A5A7V749 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00390 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.9e-04
Identity = 30/85 (35.29%), Postives = 45/85 (52.94%), Query Frame = 0

Query: 5   KDEVDEDYVFKFMDIFICKSLENGIE------------HIIYQRKLNDLELKMDNTNVNN 64
           ++ +DEDY  KF+D  +CK + N  E            H+  Q++ +DLELK DNTN  N
Sbjct: 252 EESLDEDYTLKFIDDHVCKPMNNVFEGVISCPSNLREMHLWIQKQFHDLELKFDNTNAYN 311

Query: 65  EAQLHQLKRKITRLKMQNQDFQKQL 78
             Q+   + ++  LK QN +   QL
Sbjct: 312 LVQIEAFEAEMNELKTQNGELNLQL 336

BLAST of IVF0008000 vs. NCBI nr
Match: KAA0049656.1 (hypothetical protein E6C27_scaffold163G001250 [Cucumis melo var. makuwa] >TYK19034.1 hypothetical protein E5676_scaffold368G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.72e-10
Identity = 33/77 (42.86%), Postives = 49/77 (63.64%), Query Frame = 0

Query: 5  KDEVDEDYVFKFMDIFICKSLENGIEHIIY------------QRKLNDLELKMDNTNVNN 64
          ++EVD  YVFKF+D FICK LE G E                Q++++DLELK+DN + +N
Sbjct: 4  EEEVDAYYVFKFIDKFICKPLERGFEDTFQCQSNLQEMQLRSQKQVSDLELKIDNASASN 63

Query: 65 EAQLHQLKRKITRLKMQ 69
          +AQ+ Q + ++ +LKMQ
Sbjct: 64 QAQMDQFQVEVKKLKMQ 80

BLAST of IVF0008000 vs. NCBI nr
Match: TYK07283.1 (hypothetical protein E5676_scaffold606G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 1.07e-09
Identity = 33/96 (34.38%), Postives = 56/96 (58.33%), Query Frame = 0

Query: 2   RGGKDEVDEDYVFKFMDIFICKSLENGIE------------HIIYQRKLNDLELKMDNTN 61
           R  +D  DE+Y+FKF+D ++CK + NG E            H+  Q++L D E+K+ N N
Sbjct: 102 RKDEDGDDENYIFKFIDDYVCKPMSNGFEDVIQCQSNLQKMHLCCQKQLRDFEVKLQNIN 161

Query: 62  VNNEAQLHQLKRKITRLKMQNQDFQKQLLAMREKTE 85
            +++AQ+  LK ++  L+ QNQ+ + Q+  + E  E
Sbjct: 162 HHHQAQIEGLKAEMQELRSQNQELKVQIHVIMEMIE 197

BLAST of IVF0008000 vs. NCBI nr
Match: KAA0064201.1 (hypothetical protein E6C27_scaffold548G001430 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 1.86e-09
Identity = 26/33 (78.79%), Postives = 31/33 (93.94%), Query Frame = 0

Query: 1   MRGGKDEVDEDYVFKFMDIFICKSLENGIEHII 33
           +RGG+DEVD+DY+FKFM+IFICK LENGIE II
Sbjct: 159 IRGGEDEVDKDYIFKFMEIFICKPLENGIEDII 191

BLAST of IVF0008000 vs. NCBI nr
Match: TYK02827.1 (hypothetical protein E5676_scaffold218G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.36e-09
Identity = 26/33 (78.79%), Postives = 31/33 (93.94%), Query Frame = 0

Query: 1   MRGGKDEVDEDYVFKFMDIFICKSLENGIEHII 33
           +RGG+DEVD+DY+FKFM+IFICK LENGIE II
Sbjct: 176 IRGGEDEVDKDYIFKFMEIFICKPLENGIEDII 208

BLAST of IVF0008000 vs. NCBI nr
Match: KAA0063408.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK11667.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 1.73e-06
Identity = 30/85 (35.29%), Postives = 45/85 (52.94%), Query Frame = 0

Query: 5   KDEVDEDYVFKFMDIFICKSLENGIE------------HIIYQRKLNDLELKMDNTNVNN 64
           ++ +DEDY  KF+D  +CK + N  E            H+  Q++ +DLELK DNTN  N
Sbjct: 252 EESLDEDYTLKFIDDHVCKPMNNVFEGVISCPSNLREMHLWIQKQFHDLELKFDNTNAYN 311

Query: 65  EAQLHQLKRKITRLKMQNQDFQKQL 77
             Q+   + ++  LK QN +   QL
Sbjct: 312 LVQIEAFEAEMNELKTQNGELNLQL 336

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C5U61.9e-0634.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VEP33.2e-0678.79Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BTN13.2e-0678.79Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3D6455.5e-0638.04Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V7493.9e-0435.29Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
KAA0049656.12.72e-1042.86hypothetical protein E6C27_scaffold163G001250 [Cucumis melo var. makuwa] >TYK190... [more]
TYK07283.11.07e-0934.38hypothetical protein E5676_scaffold606G001830 [Cucumis melo var. makuwa][more]
KAA0064201.11.86e-0978.79hypothetical protein E6C27_scaffold548G001430 [Cucumis melo var. makuwa][more]
TYK02827.12.36e-0978.79hypothetical protein E5676_scaffold218G00190 [Cucumis melo var. makuwa][more]
KAA0063408.11.73e-0635.29ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK11667.1 ty3-gyp... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 38..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0008000.2IVF0008000.2mRNA