IVF0007955 (gene) Melon (IVF77) v1

Overview


Name	IVF0007955
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RNA-binding protein 1-like
Location	chr07: 1685074 .. 1685860 (-)
RNA-Seq Expression	IVF0007955
Synteny	IVF0007955

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTCCTCCAGATTGGAGGTTGGAAAAGAAAAAAGAAAACTAATACATATAAAATCTGTGAAGCCAACAAGGTTGAATTTGAGTAATACTAAGATGGACAATATCAATGATCAGTGTAGGGGAAGAAAGATTTTCGTTGGTCAGATAACCGATGTAGTTGTGATGCATGATAGTGGTTGTGATGCATGGTAGTGTAACAAATGATAGTGGTTGTGATGCATGATAGTGTAACAAATCGCCGTAGAGGATTTGGATTCGTCACATTTGAATCTGTAGGATCTGTCGACTCTGTTGTGCAAAGGAACTTTCATGAACTGAATGGGAGGCTGTGGAGGTGAAAAGCTATCCCAAAAAGGGGAACTACAATGGTGTTCATATTCCCAATCCTAGAAGAACACAGGAAGCAAAAAGTCACTTGATAACAGGAATAGGAATGTGTCTTTCCCTTACCCTTGTTATGGTTGTGGTTATCCAATTTATCCTGGTTTTACACCTTTTCAACTACATTCCGGACCGGCCTTTGATTTGTATGGTTCTAATTTCTATGGGAATTGGTTTCCCACTAGTTATGGCTCGTGGTATGGACCTAATTTTTTTGGTATTAGGATGTTAGCTCCGCTTCCTAGAGATTCTTCGATGCATTCAAGCATGAAGAAATGGGGAGATAAAACATAACACTATCGGAAAACGAATTATGTCTGCTGATGCAGCTCCATTTCAGATCAAAGACAGAACTTCAATTCTGTTGTCTCTTATTCTTAGAATTCTAATATTTGTGATATAA

mRNA sequence

ATGTTTTCCTCCAGATTGGAGGTTGGAAAAGAAAAAAGAAAACTAATACATATAAAATCTGTGAAGCCAACAAGGTTGAATTTGAGTAATACTAAGATGGACAATATCAATGATCAGTGTAGGGGAAGAAAGATTTTCGTTGGTCAGATAACCGATGTAGTTGTGATGCATGATATGGTTGTGATGCATGATAGTGTAACAAATCGCCGTAGAGGATTTGGATTCGTCACATTTGAATCTGTAGGATCTGTCGACTCTGTTGTGCAAAGGAACTTTCATGAACTGAATGGGAGGCTCAAAAAGTCACTTGATAACAGGAATAGGAATGTGTCTTTCCCTTACCCTTGTTATGGTTGTGGTTATCCAATTTATCCTGGTTTTACACCTTTTCAACTACATTCCGGACCGGCCTTTGATTTGTATGGTTCTAATTTCTATGGGAATTGGTTTCCCACTAGTTATGGCTCGTGGTATGGACCTAATTTTTTTGGTATTAGGATAAATGGGGAGATAAAACATAACACTATCGGAAAACGAATTATGTCTGCTGATGCAGCTCCATTTCAGATCAAAGACAGAACTTCAATTCTGTTGTCTCTTATTCTTAGAATTCTAATATTTGTGATATAA

Coding sequence (CDS)

ATGTTTTCCTCCAGATTGGAGGTTGGAAAAGAAAAAAGAAAACTAATACATATAAAATCTGTGAAGCCAACAAGGTTGAATTTGAGTAATACTAAGATGGACAATATCAATGATCAGTGTAGGGGAAGAAAGATTTTCGTTGGTCAGATAACCGATGTAGTTGTGATGCATGATATGGTTGTGATGCATGATAGTGTAACAAATCGCCGTAGAGGATTTGGATTCGTCACATTTGAATCTGTAGGATCTGTCGACTCTGTTGTGCAAAGGAACTTTCATGAACTGAATGGGAGGCTCAAAAAGTCACTTGATAACAGGAATAGGAATGTGTCTTTCCCTTACCCTTGTTATGGTTGTGGTTATCCAATTTATCCTGGTTTTACACCTTTTCAACTACATTCCGGACCGGCCTTTGATTTGTATGGTTCTAATTTCTATGGGAATTGGTTTCCCACTAGTTATGGCTCGTGGTATGGACCTAATTTTTTTGGTATTAGGATAAATGGGGAGATAAAACATAACACTATCGGAAAACGAATTATGTCTGCTGATGCAGCTCCATTTCAGATCAAAGACAGAACTTCAATTCTGTTGTCTCTTATTCTTAGAATTCTAATATTTGTGATATAA

Protein sequence

MFSSRLEVGKEKRKLIHIKSVKPTRLNLSNTKMDNINDQCRGRKIFVGQITDVVVMHDMVVMHDSVTNRRRGFGFVTFESVGSVDSVVQRNFHELNGRLKKSLDNRNRNVSFPYPCYGCGYPIYPGFTPFQLHSGPAFDLYGSNFYGNWFPTSYGSWYGPNFFGIRINGEIKHNTIGKRIMSADAAPFQIKDRTSILLSLILRILIFVI

Homology

[Close]

BLAST of IVF0007955 vs. ExPASy Swiss-Prot
Match: Q9C652 (RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-08
Identity = 36/90 (40.00%), Postives = 50/90 (55.56%), Query Frame = 0


Query: 22  KPTRLNLSNTKMDNINDQCRGRKIFVGQITDVVVMH-------------DMVVMHDSVTN 81
           K  ++N    +M +     R +KIFVG ++                   D+VVMHD VTN
Sbjct: 99  KVQQMNGGLREMSSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTN 158

Query: 82  RRRGFGFVTFESVGSVDSVVQRNFHELNGR 99
           R RGFGFVT++S  SV+ V+Q NFHEL+ +
Sbjct: 159 RPRGFGFVTYDSEDSVEVVMQSNFHELSDK 188

[Close]

BLAST of IVF0007955 vs. ExPASy Swiss-Prot
Match: Q96DH6 (RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.0e-08
Identity = 46/144 (31.94%), Postives = 66/144 (45.83%), Query Frame = 0


Query: 41  RGRKIFVGQITDVVVMHDM-------------VVMHDSVTNRRRGFGFVTFESVGSVDSV 100
           R +KIFVG ++   V+ D+             ++M D  TNR RGFGFVTFE+   V+ V
Sbjct: 108 RTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKV 167

Query: 101 VQRNFHELNGRLKKSLDNRNRNVSFPYPCYGCGYPIYPGFTPFQLHSG----PAF-DLYG 160
            + +FHE+N ++ +    + + V FP    G    +      F L  G    P F   YG
Sbjct: 168 CEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYG 227

[Close]

BLAST of IVF0007955 vs. ExPASy Swiss-Prot
Match: Q920Q6 (RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.0e-08
Identity = 46/144 (31.94%), Postives = 66/144 (45.83%), Query Frame = 0


Query: 41  RGRKIFVGQITDVVVMHDM-------------VVMHDSVTNRRRGFGFVTFESVGSVDSV 100
           R +KIFVG ++   V+ D+             ++M D  TNR RGFGFVTFE+   V+ V
Sbjct: 108 RTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKV 167

Query: 101 VQRNFHELNGRLKKSLDNRNRNVSFPYPCYGCGYPIYPGFTPFQLHSG----PAF-DLYG 160
            + +FHE+N ++ +    + + V FP    G    +      F L  G    P F   YG
Sbjct: 168 CEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYG 227

[Close]

BLAST of IVF0007955 vs. ExPASy Swiss-Prot
Match: Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.9e-07
Identity = 49/165 (29.70%), Postives = 76/165 (46.06%), Query Frame = 0


Query: 27  NLSNTKMDNINDQCRGRKIFVGQITDVVV-------------MHDMVVMHDSVTNRRRGF 86
           NL+ ++    +   + +KIFVG +   +              + D+ +M+D  TNR RGF
Sbjct: 94  NLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGF 153

Query: 87  GFVTFESVGSVDSVVQRNFHELNGR---LKKSLD----------NRNRNVSFPYPCYGCG 146
           GFV+F+S  +VDSV+ + FH+L+G+   +K++L           +     S  Y  YG  
Sbjct: 154 GFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANPGGGGRSMGGGGSGGYQGYGGN 213

Query: 147 YPIYPG---FTPFQLHS--GPAFDLYGSNFYGNWFPT-SYGSWYG 160
              Y G      F  H   G     YGS+ YG  +   S G+ YG
Sbjct: 214 ESSYDGRMDSNRFLQHQSVGNGLPSYGSSGYGAGYGNGSNGAGYG 258

[Close]

BLAST of IVF0007955 vs. ExPASy Swiss-Prot
Match: Q9VVE5 (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=Rbp6 PE=2 SV=3)

HSP 1 Score: 56.2 bits (134), Expect = 5.1e-07
Identity = 30/86 (34.88%), Postives = 46/86 (53.49%), Query Frame = 0


Query: 41  RGRKIFVGQITDVVVMHDM-------------VVMHDSVTNRRRGFGFVTFESVGSVDSV 100
           R +KIFVG ++    + D+             ++M D  TNR RGFGFVTF+S   VD V
Sbjct: 116 RTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKV 175

Query: 101 VQRNFHELNGRLKKSLDNRNRNVSFP 114
            + +FHE+N ++ +    + + V  P
Sbjct: 176 CEIHFHEINNKMVECKKAQPKEVMLP 201

[Close]

BLAST of IVF0007955 vs. ExPASy TrEMBL
Match: A0A0A0L563 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G644730 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 7.0e-52
Identity = 125/239 (52.30%), Postives = 137/239 (57.32%), Query Frame = 0


Query: 28  LSNTKMDNINDQCRGRKIFVGQITDVVV-------------MHDMVVMHDSVTNRRRGFG 87
           +S T+MDN NDQCRGRKIFVG ++  +              + D+VVMHDSVTNR RGFG
Sbjct: 1   MSTTRMDNNNDQCRGRKIFVGGLSAELTEEEFRSYFENFGQITDVVVMHDSVTNRPRGFG 60

Query: 88  FVTFESVGSVDSVVQRNFHELNGR------------------------LKKSLDNRNRNV 147
           FVTFES+ SVDSV+QRNFHELNGR                         K  L N NRNV
Sbjct: 61  FVTFESLESVDSVLQRNFHELNGRRVEVKRAIPKKGNYNGVHIPNARAAKSPLLNGNRNV 120

Query: 148 SFPYPCYGCGYPIYPGFTPFQLHSGPAFDLYGSNFYGNWFP------TSYGSWYGPNFFG 196
            FPYP YG GYPIYPGFT F  H G A D YGSNFYGNWFP       S G W+GPNFF 
Sbjct: 121 PFPYPYYGSGYPIYPGFTHFP-HYGAAVDSYGSNFYGNWFPPGSANIASDGWWHGPNFFS 180

[Close]

BLAST of IVF0007955 vs. ExPASy TrEMBL
Match: A0A6J1J2K5 (RNA-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481242 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.1e-32
Identity = 93/223 (41.70%), Postives = 118/223 (52.91%), Query Frame = 0


Query: 36  INDQCRGRKIFVGQITDVVV-------------MHDMVVMHDSVTNRRRGFGFVTFESVG 95
           + DQ RGRKIFVG ++  +              + D+VVM DSVT R RGFGF+TF+SV 
Sbjct: 7   MEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQ 66

Query: 96  SVDSVVQRNFHELNGR---LKKSLDNRNR--------------NVSFPYPCYGCGYPIYP 155
           SVDSV+Q NFHELNGR   +K+++  +                NV   YP Y CGY +YP
Sbjct: 67  SVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSCGYTVYP 126

Query: 156 GFTPFQLHSGPAFDLYGSNFYGNWFPTSYG------SWYGPNFFGI-------------- 194
           GFTPF  + GP F LYGS+ YGNWF  S+G      +WYGPNFFG+              
Sbjct: 127 GFTPFPPY-GPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFFGMFPPPHKNSLVYPTY 186

[Close]

BLAST of IVF0007955 vs. ExPASy TrEMBL
Match: A0A6J1FS87 (RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111446397 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 4.0e-31
Identity = 91/223 (40.81%), Postives = 116/223 (52.02%), Query Frame = 0


Query: 36  INDQCRGRKIFVGQITDVVV-------------MHDMVVMHDSVTNRRRGFGFVTFESVG 95
           + DQ RGRKIFVG ++  +              + D+VVM DSVT R RGFGF+TF+SV 
Sbjct: 7   MEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQ 66

Query: 96  SVDSVVQRNFHELNGR---LKKSLDNRNR--------------NVSFPYPCYGCGYPIYP 155
           SVDSV+Q NFHELNGR   +K+++  +                NV   YP Y CGY +YP
Sbjct: 67  SVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSCGYTVYP 126

Query: 156 GFTPFQLHSGPAFDLYGSNFYGNWFPTSYG------SWYGPNFFGI-------------- 194
           GFTPF  + GP F LYGS+ YGNWF  S+G      +WY PNFFG+              
Sbjct: 127 GFTPFPPY-GPGFGLYGSDPYGNWFSPSFGPMASPAAWYAPNFFGMFPPPHKNSLVYPTY 186

[Close]

BLAST of IVF0007955 vs. ExPASy TrEMBL
Match: A0A6J1C724 (RNA-binding protein 1-like OS=Momordica charantia OX=3673 GN=LOC111008498 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.8e-23
Identity = 88/233 (37.77%), Postives = 118/233 (50.64%), Query Frame = 0


Query: 26  LNLSNTKMDNINDQCRGRKIFVGQITDVVV-------------MHDMVVMHDSVTNRRRG 85
           +N S+ +M++ NDQ RG+KIFVG +   +              + D+VVM DSVTNR RG
Sbjct: 1   MNKSSNRMESNNDQSRGKKIFVGGLPSDLTENEFKSYFEKFGQITDVVVMQDSVTNRPRG 60

Query: 86  FGFVTFESVGSVDSVVQRNFHELNGR---LKKSL-DNRNRNVSFP--------------Y 145
           FGF+TF+SV SV+ V+Q NFHELNGR   +K+++  NRN N S P              Y
Sbjct: 61  FGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSNPQRGKSPLSPHVPLYY 120

Query: 146 PCYGCGYPIYPGFTPFQLHSGPAFDLYGSNFYGNWF------------PTSYGS-WYGPN 194
           P +  G  +YPG+ PF  +       YGS+ YG+W             P   GS WY PN
Sbjct: 121 PHFSSGPVVYPGYAPFPHY-------YGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPN 180

[Close]

BLAST of IVF0007955 vs. ExPASy TrEMBL
Match: A0A6A1UXZ2 (RNA-binding protein 1 OS=Morella rubra OX=262757 GN=CJ030_MR8G001944 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.9e-17
Identity = 66/172 (38.37%), Postives = 85/172 (49.42%), Query Frame = 0


Query: 34  DNINDQCRGRKIFVGQITDVV-------------VMHDMVVMHDSVTNRRRGFGFVTFES 93
           DN ++QCR +KIFVG ++  +             ++ D+VVMHDS T R RGFGFVTF+S
Sbjct: 102 DNGDNQCRTKKIFVGGLSAGLTEAEFKNYFERFGMVTDVVVMHDSTTQRPRGFGFVTFDS 161

Query: 94  VGSVDSVVQRNFHELNGRL---KKSLDNRNRNVSFP---------------YPCYGCGYP 153
             SV+ V+  +FHELNGRL   K+++     N S                 YP Y  GY 
Sbjct: 162 EESVEKVILNSFHELNGRLVEVKRAVPKEANNSSDTGFTTRVEGRRGSPGCYPPYSFGYW 221

Query: 154 IYPGFTPFQLHSGPAFDLYGSNFYGNWF----PTSYGS----------WYGP 161
           I PG+ PF   SG     YG + YG W+      S GS          WYGP
Sbjct: 222 ILPGYAPFHGFSGGGCFPYGGSIYGGWYSPGGSVSVGSGVAPLPLRSAWYGP 273

[Close]

BLAST of IVF0007955 vs. NCBI nr
Match: KAE8649895.1 (hypothetical protein Csa_012205 [Cucumis sativus])

HSP 1 Score: 233 bits (595), Expect = 2.89e-73
Identity = 137/257 (53.31%), Postives = 152/257 (59.14%), Query Frame = 0


Query: 10  KEKRKLIHIKSVKPTRLNLSNTKMDNINDQCRGRKIFVGQITDVVV-------------M 69
           K K+KL  IKS++PTRLN+S T+MDN NDQCRGRKIFVG ++  +              +
Sbjct: 35  KRKKKLYVIKSLEPTRLNMSTTRMDNNNDQCRGRKIFVGGLSAELTEEEFRSYFENFGQI 94

Query: 70  HDMVVMHDSVTNRRRGFGFVTFESVGSVDSVVQRNFHELNGR------------------ 129
            D+VVMHDSVTNR RGFGFVTFES+ SVDSV+QRNFHELNGR                  
Sbjct: 95  TDVVVMHDSVTNRPRGFGFVTFESLESVDSVLQRNFHELNGRRVEVKRAIPKKGNYNGVH 154

Query: 130 ------LKKSLDNRNRNVSFPYPCYGCGYPIYPGFTPFQLHSGPAFDLYGSNFYGNWFP- 189
                  K  L N NRNV FPYP YG GYPIYPGFT F  H G A D YGSNFYGNWFP 
Sbjct: 155 IPNARAAKSPLLNGNRNVPFPYPYYGSGYPIYPGFTHFP-HYGAAVDSYGSNFYGNWFPP 214

Query: 190 -----TSYGSWYGPNFFGIRI----------------------------NGEIKHNTIGK 195
                 S G W+GPNFF + +                            NGEIK NT GK
Sbjct: 215 GSANIASDGWWHGPNFFSVGMLPPLCRNSLMHPSKGIYIGSRNGMANTRNGEIKQNTAGK 274

[Close]

BLAST of IVF0007955 vs. NCBI nr
Match: XP_038898856.1 (RNA-binding protein 1-like [Benincasa hispida])

HSP 1 Score: 217 bits (553), Expect = 1.73e-67
Identity = 121/245 (49.39%), Postives = 137/245 (55.92%), Query Frame = 0


Query: 28  LSNTKMDNINDQCRGRKIFVGQITDVVV-------------MHDMVVMHDSVTNRRRGFG 87
           +S T+M+N NDQCRGRKIFVG ++  +              + D+VVMHDSVTNR RGFG
Sbjct: 3   MSTTRMENNNDQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRGFG 62

Query: 88  FVTFESVGSVDSVVQRNFHELNGRL--------------------------KKSLDNRNR 147
           F+TFESV SVDSV+Q NFHELNGR                           K  L N NR
Sbjct: 63  FITFESVESVDSVLQSNFHELNGRRVEVKRAIPKKGNYNGGHIPNARTQGGKSPLPNSNR 122

Query: 148 NVSFPYPCYGCGYPIYPGFTPFQLHSGPAFDLYGSNFYGNWFPTSYGS------WYGPNF 194
           NV FPYP YG  YP+YPGFTPF  + GP  DLYGS+ YGNWFP S+G+      WYGPNF
Sbjct: 123 NVPFPYPYYGSSYPVYPGFTPFPHYGGPGVDLYGSHLYGNWFPPSFGNMASEGTWYGPNF 182

[Close]

BLAST of IVF0007955 vs. NCBI nr
Match: XP_004141412.1 (RNA-binding protein 1 [Cucumis sativus])

HSP 1 Score: 213 bits (543), Expect = 4.26e-66
Identity = 125/239 (52.30%), Postives = 137/239 (57.32%), Query Frame = 0


Query: 28  LSNTKMDNINDQCRGRKIFVGQITDVVV-------------MHDMVVMHDSVTNRRRGFG 87
           +S T+MDN NDQCRGRKIFVG ++  +              + D+VVMHDSVTNR RGFG
Sbjct: 1   MSTTRMDNNNDQCRGRKIFVGGLSAELTEEEFRSYFENFGQITDVVVMHDSVTNRPRGFG 60

Query: 88  FVTFESVGSVDSVVQRNFHELNGR------------------------LKKSLDNRNRNV 147
           FVTFES+ SVDSV+QRNFHELNGR                         K  L N NRNV
Sbjct: 61  FVTFESLESVDSVLQRNFHELNGRRVEVKRAIPKKGNYNGVHIPNARAAKSPLLNGNRNV 120

Query: 148 SFPYPCYGCGYPIYPGFTPFQLHSGPAFDLYGSNFYGNWFP------TSYGSWYGPNFFG 195
            FPYP YG GYPIYPGFT F  H G A D YGSNFYGNWFP       S G W+GPNFF 
Sbjct: 121 PFPYPYYGSGYPIYPGFTHFP-HYGAAVDSYGSNFYGNWFPPGSANIASDGWWHGPNFFS 180

[Close]

BLAST of IVF0007955 vs. NCBI nr
Match: XP_022982410.1 (RNA-binding protein 1-like [Cucurbita maxima])

HSP 1 Score: 149 bits (376), Expect = 5.34e-41
Identity = 95/230 (41.30%), Postives = 122/230 (53.04%), Query Frame = 0


Query: 29  SNTKMDNINDQCRGRKIFVGQITDVVV-------------MHDMVVMHDSVTNRRRGFGF 88
           + T+M+   DQ RGRKIFVG ++  +              + D+VVM DSVT R RGFGF
Sbjct: 3   NGTRME---DQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGF 62

Query: 89  VTFESVGSVDSVVQRNFHELNGR---LKKSLDNRNR--------------NVSFPYPCYG 148
           +TF+SV SVDSV+Q NFHELNGR   +K+++  +                NV   YP Y 
Sbjct: 63  ITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLPSYPYYS 122

Query: 149 CGYPIYPGFTPFQLHSGPAFDLYGSNFYGNWFPTSYG------SWYGPNFFGI------- 193
           CGY +YPGFTPF  + GP F LYGS+ YGNWF  S+G      +WYGPNFFG+       
Sbjct: 123 CGYTVYPGFTPFPPY-GPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFFGMFPPPHKN 182

[Close]

BLAST of IVF0007955 vs. NCBI nr
Match: KAG7037746.1 (RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146 bits (369), Expect = 1.01e-39
Identity = 102/258 (39.53%), Postives = 135/258 (52.33%), Query Frame = 0


Query: 1   MFSSRLEVGKEKRKLIHIKSVKPTRLNLSNTKMDNINDQCRGRKIFVGQITDVVV----- 60
           MFSS + VGKE      ++  +  R++ + T+M+   DQ RGRKIFVG ++  +      
Sbjct: 1   MFSSTI-VGKET-----VELAREQRMS-NGTRME---DQFRGRKIFVGGLSAELTEDDFK 60

Query: 61  --------MHDMVVMHDSVTNRRRGFGFVTFESVGSVDSVVQRNFHELNGR---LKKSLD 120
                   + D+VVM DSVT R RGFGF+TF+SV SVDSV+Q NFHELNGR   +K+++ 
Sbjct: 61  SYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIP 120

Query: 121 NRNR--------------NVSFPYPCYGCGYPIYPGFTPFQLHSGPAFDLYGSNFYGNWF 180
            +                NV   YP Y CGY +YPGFTPF  + GP F LYGS+ YGNWF
Sbjct: 121 KKGNYNGGHISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPY-GPGFGLYGSDPYGNWF 180

Query: 181 PTSYG------SWYGPNFFGI--------------RING---------------EIKHNT 193
             S+G      +WY PNFFG+                NG               ++   T
Sbjct: 181 SPSFGPMASPAAWYAPNFFGMFPPPHKDSLVYPTYSSNGLSTPVAGYETADARRKVDPPT 240

[Close]

BLAST of IVF0007955 vs. TAIR 10
Match: AT4G26650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.3e-10
Identity = 46/136 (33.82%), Postives = 63/136 (46.32%), Query Frame = 0


Query: 41  RGRKIFVGQITDVV-------------VMHDMVVMHDSVTNRRRGFGFVTFESVGSVDSV 100
           R +KIFVG +   +              + D+VVM+D  T R RGFGF+TF+S  SVD V
Sbjct: 120 RTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMV 179

Query: 101 VQRNFHELNGRL-------KKSLDNRNRNVSFPYPCYGCGYPIYPGFTPFQLHSGPAFDL 157
           + + FHELNG++        K L +   N S P   YG  Y + P  +            
Sbjct: 180 LHKTFHELNGKMVEVKRAVPKELSSTTPNRS-PLIGYGNNYGVVPNRS------------ 239

[Close]

BLAST of IVF0007955 vs. TAIR 10
Match: AT4G26650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.3e-10
Identity = 46/136 (33.82%), Postives = 63/136 (46.32%), Query Frame = 0


Query: 41  RGRKIFVGQITDVV-------------VMHDMVVMHDSVTNRRRGFGFVTFESVGSVDSV 100
           R +KIFVG +   +              + D+VVM+D  T R RGFGF+TF+S  SVD V
Sbjct: 117 RTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMV 176

Query: 101 VQRNFHELNGRL-------KKSLDNRNRNVSFPYPCYGCGYPIYPGFTPFQLHSGPAFDL 157
           + + FHELNG++        K L +   N S P   YG  Y + P  +            
Sbjct: 177 LHKTFHELNGKMVEVKRAVPKELSSTTPNRS-PLIGYGNNYGVVPNRS------------ 236

[Close]

BLAST of IVF0007955 vs. TAIR 10
Match: AT1G58470.1 (RNA-binding protein 1 )

HSP 1 Score: 61.6 bits (148), Expect = 8.6e-10
Identity = 36/90 (40.00%), Postives = 50/90 (55.56%), Query Frame = 0


Query: 22  KPTRLNLSNTKMDNINDQCRGRKIFVGQITDVVVMH-------------DMVVMHDSVTN 81
           K  ++N    +M +     R +KIFVG ++                   D+VVMHD VTN
Sbjct: 99  KVQQMNGGLREMSSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTN 158

Query: 82  RRRGFGFVTFESVGSVDSVVQRNFHELNGR 99
           R RGFGFVT++S  SV+ V+Q NFHEL+ +
Sbjct: 159 RPRGFGFVTYDSEDSVEVVMQSNFHELSDK 188

[Close]

BLAST of IVF0007955 vs. TAIR 10
Match: AT5G47620.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 61.6 bits (148), Expect = 8.6e-10
Identity = 35/103 (33.98%), Postives = 54/103 (52.43%), Query Frame = 0


Query: 14  KLIHIKSVKP----TRLNLSNTKMDNINDQCRGRKIFVGQITDVV-------------VM 73
           K++  K   P       N SN+ +         +KIFVG +   V             ++
Sbjct: 73  KIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMI 132

Query: 74  HDMVVMHDSVTNRRRGFGFVTFESVGSVDSVVQRNFHELNGRL 100
            D+VVM+D  T R RGFGF++++S  +VD V+Q+ FHELNG++
Sbjct: 133 TDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKM 175

[Close]

BLAST of IVF0007955 vs. TAIR 10
Match: AT5G47620.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 61.6 bits (148), Expect = 8.6e-10
Identity = 35/103 (33.98%), Postives = 54/103 (52.43%), Query Frame = 0


Query: 14  KLIHIKSVKP----TRLNLSNTKMDNINDQCRGRKIFVGQITDVV-------------VM 73
           K++  K   P       N SN+ +         +KIFVG +   V             ++
Sbjct: 73  KIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMI 132

Query: 74  HDMVVMHDSVTNRRRGFGFVTFESVGSVDSVVQRNFHELNGRL 100
            D+VVM+D  T R RGFGF++++S  +VD V+Q+ FHELNG++
Sbjct: 133 TDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKM 175

The following BLAST results are available for this feature:

BLAST of IVF0007955 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C652	1.2e-08	40.00	RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1	[more]
Q96DH6	6.0e-08	31.94	RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1	[more]
Q920Q6	6.0e-08	31.94	RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1	[more]
Q8W034	3.9e-07	29.70	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP...	[more]
Q9VVE5	5.1e-07	34.88	RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=R...	[more]

BLAST of IVF0007955 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L563	7.0e-52	52.30	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G644730 PE=4 SV...	[more]
A0A6J1J2K5	2.1e-32	41.70	RNA-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481242 PE=4 SV=1	[more]
A0A6J1FS87	4.0e-31	40.81	RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111446397 PE=4 SV...	[more]
A0A6J1C724	1.8e-23	37.77	RNA-binding protein 1-like OS=Momordica charantia OX=3673 GN=LOC111008498 PE=4 S...	[more]
A0A6A1UXZ2	1.9e-17	38.37	RNA-binding protein 1 OS=Morella rubra OX=262757 GN=CJ030_MR8G001944 PE=4 SV=1	[more]

BLAST of IVF0007955 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649895.1	2.89e-73	53.31	hypothetical protein Csa_012205 [Cucumis sativus]	[more]
XP_038898856.1	1.73e-67	49.39	RNA-binding protein 1-like [Benincasa hispida]	[more]
XP_004141412.1	4.26e-66	52.30	RNA-binding protein 1 [Cucumis sativus]	[more]
XP_022982410.1	5.34e-41	41.30	RNA-binding protein 1-like [Cucurbita maxima]	[more]
KAG7037746.1	1.01e-39	39.53	RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of IVF0007955 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26650.1	2.3e-10	33.82	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G26650.2	2.3e-10	33.82	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G58470.1	8.6e-10	40.00	RNA-binding protein 1	[more]
AT5G47620.1	8.6e-10	33.98	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G47620.2	8.6e-10	33.98	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 59..98 e-value: 1.1E-4 score: 22.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 24..115 score: 10.598964
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 27..103 e-value: 5.9E-9 score: 38.1
None	No IPR available	PANTHER	PTHR48032	RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6	coord: 48..161
None	No IPR available	PANTHER	PTHR48032:SF12	NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED	coord: 48..161
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 47..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0007955.2	IVF0007955.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding