IVF0007949 (gene) Melon (IVF77) v1

Overview


Name	IVF0007949
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	60S ribosomal protein L39
Location	chr03: 23056366 .. 23058648 (+)
RNA-Seq Expression	IVF0007949
Synteny	IVF0007949

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCGAGAGTCAACAGTTTTAAGTTTTAACATGGGCGTGGGACCTTAATAAACTAATCACTCCCCTTTTCTTCTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTTTTTTAAAGAATTTTATTTCATTTTAAATCCACATATACCATTGAATTTTAAAATTTATGGTAACCATTTTCATTAAATTTCTTTTTTTTTCCTTAAAAAAAATAAAAAAATAAAACTTATGACTTTATCAAATTAATCCTTAAATTTTTATACATGAATAATTTTCTTTCATAATTGTCTAATATTTACTCTACTTCTCCCTTTTATAAAACTGACACTTACAATAATTTTGCCCAAGGTTGAGAATTATTGAAGGGATGATTTTCATTAGTAATTGTATTGAACGTTAGAAATTGATTATGAAATTTTAGAAATATAATTAATTATCTGACTCAAAGTTCTTAAGAATTAAATATTCTGAACTTTCGAGATTTGAATATTGAAATTTTGAATATCAAAATTTGCAAGATTTGAAGACAAAATACTAAGCTTTGAAGATTAAAGTTGTCAAGCTTTGAAGAATAGAAAACCAAAACCTACCAAATTTTAAAAATTGAAACTCTTAAGCTCCAACAATTAAAACTTTCACGTTTTAAAAACTAAAAGTCCAAACTATCAAGAAACTCTTCGAGCTTCTAAAGATTAAATCATAAACTTAAATTCTTTAACTATTTGAAGATATAAGTATTCAATTTCAAGAACATTTACATGCTTCATGTTTTCAAATCAAACGTAAACATCTTATTAAAAAAATCAAATGACCGATTATTAAAAATCAAACAACTTGATAAATCGACATAACACAAGTTCTTTTTACTCTACTAAATACTTCCCCGGTAAGATAGATAGATTTACAAGGGTTGATTCGGTTGAATATTAAAGCTGATAATACAATTATTAGGAGAGTGTTTCTAAAAACTCTCTGCTAAAATAATTGATATTGTTTCTTTAACTCTCTAATTAATAATTGGTGAATTAATTGGCAGACAATTTCGGAAATTGCTTCCTGCTCCATGTGAAGCAATGTGCTCATGGATTTTTAAAATTATCTTATTAGTTTTAACCTTACTGAGTATGCATGAGCTTAAGATTTCAAAAGTTGGGGTTTAGTCAATAATTAGATCTTGTGGTCTCATTCGAGGCTCAACACTCAATAATATCCTACATTATCTAATCCATTCAAAGTTACTTAATTTAACAGTTATTTAGAATATGTTACTATATATTAATGAGGATAATGGCATGTTATTAATTTATGTTTATAGATATGTTTACGTTAACTTAATTCTCTTGTATATTTTTAGTATTATATAATTTAATTGTATATTATAACATATTTAAATTCTAAAAAAATTAATCGAGTTTATCATATTACACATTACGTCTCTAAGTATCTGTCTTTATTTTCAAAATATGAATACATTGAAAGATATAAAATTATTATTATTTTTTTCAGAATTTTTTCAATTTATATCATAAAATTTGGAATAATTTTGAAGAACATAATTTAAATTATACATATTGCTGAAAATTTTAAAAAACAAAACAATCCATTTTAAATTGTAGACCCAGCCCATTAAGTAGGAGAAGGCTTATTATATGGCCGAGTTTTACTAATAAAGAGGCTCATTTCTTCTAGGCTTCAAAGTTTTCTTGAACGAGCTCGGAAAGGCCTTATGGATCAGCCCACTACTTATAAGTAGGCTCATTGGTTGTCTAGAAATCGAGCAACATTGTTTTAGCGGTTCACATAAAAAGGTCATCTCCTCTTTCATTTGTTTTCTCTGAAATTAGGGTTTCCGTTCCTTTTGTTCGCTGTTGGTGGCCCTCGTCGCAGCCGGTTGCCGAATCTCCAAGATGGTATCTCTTTCTTTCTTCTACTGATTTTCTACTTTCTTTCTTCCGATTTTTTTTTTCGATTCGTTATTTTTGTTTTGAGAGGTTTTGTGATTTGAGTTTTCGTAAATTCGCGCAGCCGTCTCACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATCCGTCTTAGGACTGATAATACCATCAGGTCTTTACTCTTCCGTTTCGTGTTCGTTCATCTAGTCATTTTATTATTTCTCAGTTTTTAATCTAACGCTGCATTTTGATGTATCTTTCAGGTACAATGCGAAGCGAAGGCACTGGCGCCGCACCAAGCTCGGATTCTGA

mRNA sequence

ATGGCCCGAGAGTCAACAGGTTTCCGTTCCTTTTGTTCGCTGTTGGTGGCCCTCGTCGCAGCCGGTTGCCGAATCTCCAAGATGCCGTCTCACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATCCGTCTTAGGACTGATAATACCATCAGGTACAATGCGAAGCGAAGGCACTGGCGCCGCACCAAGCTCGGATTCTGA

Coding sequence (CDS)

ATGGCCCGAGAGTCAACAGGTTTCCGTTCCTTTTGTTCGCTGTTGGTGGCCCTCGTCGCAGCCGGTTGCCGAATCTCCAAGATGCCGTCTCACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATCCGTCTTAGGACTGATAATACCATCAGGTACAATGCGAAGCGAAGGCACTGGCGCCGCACCAAGCTCGGATTCTGA

Protein sequence

MARESTGFRSFCSLLVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Homology

[Close]

BLAST of IVF0007949 vs. ExPASy Swiss-Prot
Match: Q6KAJ8 (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 2.1e-22
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 28 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 79
          MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of IVF0007949 vs. ExPASy Swiss-Prot
Match: P51426 (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B PE=3 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 2.1e-22
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 28 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 79
          MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of IVF0007949 vs. ExPASy Swiss-Prot
Match: P51425 (60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.1e-22
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 28 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 79
          MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of IVF0007949 vs. ExPASy Swiss-Prot
Match: Q5SMI4 (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.0e-22
Identity = 48/51 (94.12%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 28 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 79
          MPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of IVF0007949 vs. ExPASy Swiss-Prot
Match: P51424 (60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 103.6 bits (257), Expect = 1.0e-21
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 28 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 79
          MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of IVF0007949 vs. ExPASy TrEMBL
Match: A0A0A0LM35 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382530 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.7e-35
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MARESTGFRSFCSLLVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDN 60
          MARESTGFRSFCSL VALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDN
Sbjct: 1  MARESTGFRSFCSLFVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDN 60

Query: 61 TIRYNAKRRHWRRTKLGF 79
          TIRYNAKRRHWRRTKLGF
Sbjct: 61 TIRYNAKRRHWRRTKLGF 78

[Close]

BLAST of IVF0007949 vs. ExPASy TrEMBL
Match: A0A6J1HDM7 (uncharacterized protein LOC111462968 OS=Cucurbita moschata OX=3662 GN=LOC111462968 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.1e-25
Identity = 62/67 (92.54%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 12  CSLLVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHW 71
           C L VAL AAG R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHW
Sbjct: 65  CFLFVAL-AAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHW 124

Query: 72  RRTKLGF 79
           RRTKLGF
Sbjct: 125 RRTKLGF 130

[Close]

BLAST of IVF0007949 vs. ExPASy TrEMBL
Match: A0A368RK84 (Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_6G104600v2 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.8e-22
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 18 LVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG 77
          L    CR SKMPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLG
Sbjct: 38 LFVLDCRFSKMPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 97

Query: 78 F 79
          F
Sbjct: 98 F 98

[Close]

BLAST of IVF0007949 vs. ExPASy TrEMBL
Match: K3YM29 (Uncharacterized protein OS=Setaria italica OX=4555 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.8e-22
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 18 LVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG 77
          L    CR SKMPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLG
Sbjct: 10 LFVLDCRFSKMPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 69

Query: 78 F 79
          F
Sbjct: 70 F 70

[Close]

BLAST of IVF0007949 vs. ExPASy TrEMBL
Match: A0A2P5ANB0 (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_315710 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.1e-21
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 24 RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 79
          R +KMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 RPAKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 71

[Close]

BLAST of IVF0007949 vs. NCBI nr
Match: KAG7029487.1 (60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121 bits (304), Expect = 1.32e-33
Identity = 62/67 (92.54%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 12  CSLLVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHW 71
           C L VAL AAG R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHW
Sbjct: 54  CFLFVAL-AAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHW 113

Query: 72  RRTKLGF 78
           RRTKLGF
Sbjct: 114 RRTKLGF 119

[Close]

BLAST of IVF0007949 vs. NCBI nr
Match: XP_022962571.1 (uncharacterized protein LOC111462968 [Cucurbita moschata])

HSP 1 Score: 121 bits (304), Expect = 1.83e-33
Identity = 62/67 (92.54%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 12  CSLLVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHW 71
           C L VAL AAG R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHW
Sbjct: 65  CFLFVAL-AAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHW 124

Query: 72  RRTKLGF 78
           RRTKLGF
Sbjct: 125 RRTKLGF 130

[Close]

BLAST of IVF0007949 vs. NCBI nr
Match: KAG7024434.1 (60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 118 bits (295), Expect = 1.21e-32
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 19 VAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 78
          +AA CR SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 28 LAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 87

[Close]

BLAST of IVF0007949 vs. NCBI nr
Match: KAG6585491.1 (60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020407.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114 bits (285), Expect = 3.61e-31
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 24 RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 78
          RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 29 RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 83

[Close]

BLAST of IVF0007949 vs. NCBI nr
Match: KAE8652209.1 (hypothetical protein Csa_022247, partial [Cucumis sativus])

HSP 1 Score: 112 bits (280), Expect = 1.24e-30
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 7  GFRSFCSLLVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTI 62
          GFRSFCSL VALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTI
Sbjct: 1  GFRSFCSLFVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTI 56

[Close]

BLAST of IVF0007949 vs. TAIR 10
Match: AT4G31985.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 103.6 bits (257), Expect = 7.3e-23
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 28 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 79
          MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of IVF0007949 vs. TAIR 10
Match: AT3G02190.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 98.6 bits (244), Expect = 2.4e-21
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 28 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 79
          MPSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of IVF0007949 vs. TAIR 10
Match: AT2G25210.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 90.1 bits (222), Expect = 8.4e-19
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 36 IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 79
          IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  IKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 44

The following BLAST results are available for this feature:

BLAST of IVF0007949 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6KAJ8	2.1e-22	96.08	60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A P...	[more]
P51426	2.1e-22	96.08	60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B P...	[more]
P51425	2.1e-22	96.08	60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1	[more]
Q5SMI4	6.0e-22	94.12	60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C P...	[more]
P51424	1.0e-21	94.12	60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2	[more]

BLAST of IVF0007949 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM35	1.7e-35	98.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382530 PE=3 SV=1	[more]
A0A6J1HDM7	6.1e-25	92.54	uncharacterized protein LOC111462968 OS=Cucurbita moschata OX=3662 GN=LOC1114629...	[more]
A0A368RK84	4.8e-22	86.89	Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_6G104600v2 PE=3 SV=1	[more]
K3YM29	4.8e-22	86.89	Uncharacterized protein OS=Setaria italica OX=4555 PE=3 SV=1	[more]
A0A2P5ANB0	1.1e-21	96.36	Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_315710 PE=3 SV=...	[more]

BLAST of IVF0007949 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029487.1	1.32e-33	92.54	60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022962571.1	1.83e-33	92.54	uncharacterized protein LOC111462968 [Cucurbita moschata]	[more]
KAG7024434.1	1.21e-32	95.00	60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6585491.1	3.61e-31	100.00	60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. sororia] >KAG7...	[more]
KAE8652209.1	1.24e-30	98.21	hypothetical protein Csa_022247, partial [Cucumis sativus]	[more]

BLAST of IVF0007949 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G31985.1	7.3e-23	94.12	Ribosomal protein L39 family protein	[more]
AT3G02190.1	2.4e-21	90.20	Ribosomal protein L39 family protein	[more]
AT2G25210.1	8.4e-19	97.67	Ribosomal protein L39 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000077	Ribosomal protein L39e	PFAM	PF00832	Ribosomal_L39	coord: 36..76 e-value: 6.5E-22 score: 76.9
IPR000077	Ribosomal protein L39e	HAMAP	MF_00629	Ribosomal_L39e	coord: 28..78 score: 12.866076
IPR023626	Ribosomal protein L39e domain superfamily	GENE3D	1.10.1620.10	Ribosomal protein L39e	coord: 28..78 e-value: 1.7E-29 score: 103.6
IPR023626	Ribosomal protein L39e domain superfamily	SUPERFAMILY	48662	Ribosomal protein L39e	coord: 30..77
None	No IPR available	PANTHER	PTHR19970:SF31	SUBFAMILY NOT NAMED	coord: 16..78
None	No IPR available	PANTHER	PTHR19970	RIBOSOMAL PROTEIN L39E	coord: 16..78
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..23 score: 5.0
IPR020083	Ribosomal protein L39e, conserved site	PROSITE	PS00051	RIBOSOMAL_L39E	coord: 57..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0007949.2	IVF0007949.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome