IVF0007930 (gene) Melon (IVF77) v1

Overview


Name	IVF0007930
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Trihelix transcription factor ASIL2
Location	chr01: 18139173 .. 18139427 (+)
RNA-Seq Expression	IVF0007930
Synteny	IVF0007930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCCTAATTCAAATTCGATTTTATGGGTGAACCCTACTACCGTTAATTTTGGGACTAGAGTTGTCAGGGAGTCGAATCCGGTGAGGTCGATGACAGGGAAGAGGAAGGAAAGGGAAAGGGAACGAGACCCATTTGCAAAGATGGTGTTCGCCATTAAAACTTTGGGAGATAAGTTTGTGAGAATGGAGAGGATGAAGGTGGAAATGGCTAAAGAGATCGAAGTTATGAGAATGGAAATGGAGATTAAATGA

mRNA sequence

ATGACCCCTAATTCAAATTCGATTTTATGGGTGAACCCTACTACCGTTAATTTTGGGACTAGAGTTGTCAGGGAGTCGAATCCGGTGAGGTCGATGACAGGGAAGAGGAAGGAAAGGGAAAGGGAACGAGACCCATTTGCAAAGATGGTGTTCGCCATTAAAACTTTGGGAGATAAGTTTGTGAGAATGGAGAGGATGAAGGTGGAAATGGCTAAAGAGATCGAAGTTATGAGAATGGAAATGGAGATTAAATGA

Coding sequence (CDS)

ATGACCCCTAATTCAAATTCGATTTTATGGGTGAACCCTACTACCGTTAATTTTGGGACTAGAGTTGTCAGGGAGTCGAATCCGGTGAGGTCGATGACAGGGAAGAGGAAGGAAAGGGAAAGGGAACGAGACCCATTTGCAAAGATGGTGTTCGCCATTAAAACTTTGGGAGATAAGTTTGTGAGAATGGAGAGGATGAAGGTGGAAATGGCTAAAGAGATCGAAGTTATGAGAATGGAAATGGAGATTAAATGA

Protein sequence

MTPNSNSILWVNPTTVNFGTRVVRESNPVRSMTGKRKERERERDPFAKMVFAIKTLGDKFVRMERMKVEMAKEIEVMRMEMEIK

Homology

[Close]

BLAST of IVF0007930 vs. ExPASy TrEMBL
Match: A0A5A7V6E6 (Trihelix transcription factor ASIL2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00160 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.2e-36
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MTPNSNSILWVNPTTVNFGTRVVRESNPVRSMTGKRKERERERDPFAKMVFAIKTLGDKF 60
          MTPNSNSILWVNPTTVNFGTRVVRESNPVRSMTGKRKERERERDPFAKMVFAIKTLGDKF
Sbjct: 1  MTPNSNSILWVNPTTVNFGTRVVRESNPVRSMTGKRKERERERDPFAKMVFAIKTLGDKF 60

Query: 61 VRMERMKVEMAKEIEVMRMEMEIK 85
          VRMERMKVEMAKEIEVMRMEMEIK
Sbjct: 61 VRMERMKVEMAKEIEVMRMEMEIK 84

[Close]

BLAST of IVF0007930 vs. ExPASy TrEMBL
Match: A0A5D3D133 (Trihelix transcription factor ASIL2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G002990 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.2e-25
Identity = 66/84 (78.57%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 1   MTPNSNSILWVNPTTVNFGTRVVRESNPVRSMTGKRKERERERDPFAKMVFAIKTLGDKF 60
           M PNSN +  +NP  VNFGTRVVRESNPVR +TGKR ERERERDP A+MV AIKTLGD F
Sbjct: 248 MNPNSNPVSGLNPAAVNFGTRVVRESNPVRPVTGKRGERERERDPVAEMVSAIKTLGDGF 307

Query: 61  VRMERMKVEMAKEIEVMRMEMEIK 85
           VRMERMK+EMA+EIE MRMEMEIK
Sbjct: 308 VRMERMKMEMAREIEAMRMEMEIK 331

[Close]

BLAST of IVF0007930 vs. ExPASy TrEMBL
Match: A0A5A7U1M4 (Trihelix transcription factor ASIL2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G003590 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.2e-25
Identity = 66/84 (78.57%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 1   MTPNSNSILWVNPTTVNFGTRVVRESNPVRSMTGKRKERERERDPFAKMVFAIKTLGDKF 60
           M PNSN +  +NP  VNFGTRVVRESNPVR +TGKR ERERERDP A+MV AIKTLGD F
Sbjct: 249 MNPNSNPVSGLNPAAVNFGTRVVRESNPVRPVTGKRGERERERDPVAEMVSAIKTLGDGF 308

Query: 61  VRMERMKVEMAKEIEVMRMEMEIK 85
           VRMERMK+EMA+EIE MRMEMEIK
Sbjct: 309 VRMERMKMEMAREIEAMRMEMEIK 332

[Close]

BLAST of IVF0007930 vs. ExPASy TrEMBL
Match: A0A0A0L413 (MADF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G129620 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.2e-25
Identity = 66/84 (78.57%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 1   MTPNSNSILWVNPTTVNFGTRVVRESNPVRSMTGKRKERERERDPFAKMVFAIKTLGDKF 60
           M PNSN +  +NP  VNFGTRVVRESNPVR +TGKR ERERERDP A+MV AIKTLGD F
Sbjct: 248 MNPNSNPVSGMNPAAVNFGTRVVRESNPVRPVTGKRGERERERDPVAEMVSAIKTLGDGF 307

Query: 61  VRMERMKVEMAKEIEVMRMEMEIK 85
           VRMERMK+EMA+EIE MRMEMEIK
Sbjct: 308 VRMERMKMEMAREIEAMRMEMEIK 331

[Close]

BLAST of IVF0007930 vs. ExPASy TrEMBL
Match: A0A1S3AW32 (trihelix transcription factor ASIL2 OS=Cucumis melo OX=3656 GN=LOC103483457 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.2e-25
Identity = 66/84 (78.57%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 1   MTPNSNSILWVNPTTVNFGTRVVRESNPVRSMTGKRKERERERDPFAKMVFAIKTLGDKF 60
           M PNSN +  +NP  VNFGTRVVRESNPVR +TGKR ERERERDP A+MV AIKTLGD F
Sbjct: 248 MNPNSNPVSGLNPAAVNFGTRVVRESNPVRPVTGKRGERERERDPVAEMVSAIKTLGDGF 307

Query: 61  VRMERMKVEMAKEIEVMRMEMEIK 85
           VRMERMK+EMA+EIE MRMEMEIK
Sbjct: 308 VRMERMKMEMAREIEAMRMEMEIK 331

[Close]

BLAST of IVF0007930 vs. NCBI nr
Match: KAA0062824.1 (trihelix transcription factor ASIL2 [Cucumis melo var. makuwa] >TYJ96728.1 trihelix transcription factor ASIL2 [Cucumis melo var. makuwa])

HSP 1 Score: 157 bits (397), Expect = 3.91e-48
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MTPNSNSILWVNPTTVNFGTRVVRESNPVRSMTGKRKERERERDPFAKMVFAIKTLGDKF 60
          MTPNSNSILWVNPTTVNFGTRVVRESNPVRSMTGKRKERERERDPFAKMVFAIKTLGDKF
Sbjct: 1  MTPNSNSILWVNPTTVNFGTRVVRESNPVRSMTGKRKERERERDPFAKMVFAIKTLGDKF 60

Query: 61 VRMERMKVEMAKEIEVMRMEMEIK 84
          VRMERMKVEMAKEIEVMRMEMEIK
Sbjct: 61 VRMERMKVEMAKEIEVMRMEMEIK 84

[Close]

BLAST of IVF0007930 vs. NCBI nr
Match: XP_008438313.1 (PREDICTED: trihelix transcription factor ASIL2 [Cucumis melo] >TYK17435.1 trihelix transcription factor ASIL2 [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (302), Expect = 1.24e-30
Identity = 66/84 (78.57%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 1   MTPNSNSILWVNPTTVNFGTRVVRESNPVRSMTGKRKERERERDPFAKMVFAIKTLGDKF 60
           M PNSN +  +NP  VNFGTRVVRESNPVR +TGKR ERERERDP A+MV AIKTLGD F
Sbjct: 248 MNPNSNPVSGLNPAAVNFGTRVVRESNPVRPVTGKRGERERERDPVAEMVSAIKTLGDGF 307

Query: 61  VRMERMKVEMAKEIEVMRMEMEIK 84
           VRMERMK+EMA+EIE MRMEMEIK
Sbjct: 308 VRMERMKMEMAREIEAMRMEMEIK 331

[Close]

BLAST of IVF0007930 vs. NCBI nr
Match: XP_004133978.1 (trihelix transcription factor ASIL2 [Cucumis sativus] >KGN56705.1 hypothetical protein Csa_011091 [Cucumis sativus])

HSP 1 Score: 120 bits (302), Expect = 1.24e-30
Identity = 66/84 (78.57%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 1   MTPNSNSILWVNPTTVNFGTRVVRESNPVRSMTGKRKERERERDPFAKMVFAIKTLGDKF 60
           M PNSN +  +NP  VNFGTRVVRESNPVR +TGKR ERERERDP A+MV AIKTLGD F
Sbjct: 248 MNPNSNPVSGMNPAAVNFGTRVVRESNPVRPVTGKRGERERERDPVAEMVSAIKTLGDGF 307

Query: 61  VRMERMKVEMAKEIEVMRMEMEIK 84
           VRMERMK+EMA+EIE MRMEMEIK
Sbjct: 308 VRMERMKMEMAREIEAMRMEMEIK 331

[Close]

BLAST of IVF0007930 vs. NCBI nr
Match: KAA0049128.1 (trihelix transcription factor ASIL2 [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (302), Expect = 1.26e-30
Identity = 66/84 (78.57%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 1   MTPNSNSILWVNPTTVNFGTRVVRESNPVRSMTGKRKERERERDPFAKMVFAIKTLGDKF 60
           M PNSN +  +NP  VNFGTRVVRESNPVR +TGKR ERERERDP A+MV AIKTLGD F
Sbjct: 249 MNPNSNPVSGLNPAAVNFGTRVVRESNPVRPVTGKRGERERERDPVAEMVSAIKTLGDGF 308

Query: 61  VRMERMKVEMAKEIEVMRMEMEIK 84
           VRMERMK+EMA+EIE MRMEMEIK
Sbjct: 309 VRMERMKMEMAREIEAMRMEMEIK 332

[Close]

BLAST of IVF0007930 vs. NCBI nr
Match: XP_038901483.1 (trihelix transcription factor ASIL2 [Benincasa hispida])

HSP 1 Score: 117 bits (294), Expect = 1.75e-29
Identity = 65/84 (77.38%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1   MTPNSNSILWVNPTTVNFGTRVVRESNPVRSMTGKRKERERERDPFAKMVFAIKTLGDKF 60
           M PNSN +  +N   VNFGTRVVRESNPVR +TGKR ERERERDP A+MV AIKTLGD F
Sbjct: 245 MNPNSNPVSGMNSAAVNFGTRVVRESNPVRPVTGKRGERERERDPVAEMVSAIKTLGDGF 304

Query: 61  VRMERMKVEMAKEIEVMRMEMEIK 84
           VRMERMK+EMA+EIE MRMEMEIK
Sbjct: 305 VRMERMKMEMAREIEAMRMEMEIK 328

[Close]

BLAST of IVF0007930 vs. TAIR 10
Match: AT2G44730.1 (Alcohol dehydrogenase transcription factor Myb/SANT-like family protein )

HSP 1 Score: 48.5 bits (114), Expect = 3.0e-06
Identity = 30/70 (42.86%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 17  NFGTRVVR--ESNPVRSMTGKRKERERERDPFAKMVFAIKTLGDKFVRMERMKVEMAKEI 76
           ++G RVVR  E    R      K  E + DP  ++  AIK LGD  VR E+ ++EM +EI
Sbjct: 267 SYGARVVRIPEGGGKRGREMMMKTEEDDNDPMVEIASAIKLLGDTLVRTEQTRMEMTREI 326

Query: 77  EVMRMEMEIK 85
           E MRM+ E+K
Sbjct: 327 EAMRMDTEMK 336

[Close]

BLAST of IVF0007930 vs. TAIR 10
Match: AT4G17060.1 (FRIGIDA interacting protein 2 )

HSP 1 Score: 41.2 bits (95), Expect = 4.8e-04
Identity = 22/45 (48.89%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 40  ERERDPFAKMVFAIKTLGDKFVRMERMKVEMAKEIEVMRMEMEIK 85
           E E DP  ++V ++K L + FVR+E  K+EM +E+E  RMEME+K
Sbjct: 233 EVESDPIDEVVSSVKMLTEMFVRVENSKMEMMREMEKSRMEMELK 277

The following BLAST results are available for this feature:

BLAST of IVF0007930 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0007930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6E6	2.2e-36	100.00	Trihelix transcription factor ASIL2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5D3D133	2.2e-25	78.57	Trihelix transcription factor ASIL2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7U1M4	2.2e-25	78.57	Trihelix transcription factor ASIL2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A0A0L413	2.2e-25	78.57	MADF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G129620 PE=4 S...	[more]
A0A1S3AW32	2.2e-25	78.57	trihelix transcription factor ASIL2 OS=Cucumis melo OX=3656 GN=LOC103483457 PE=4...	[more]

BLAST of IVF0007930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062824.1	3.91e-48	100.00	trihelix transcription factor ASIL2 [Cucumis melo var. makuwa] >TYJ96728.1 trihe...	[more]
XP_008438313.1	1.24e-30	78.57	PREDICTED: trihelix transcription factor ASIL2 [Cucumis melo] >TYK17435.1 trihel...	[more]
XP_004133978.1	1.24e-30	78.57	trihelix transcription factor ASIL2 [Cucumis sativus] >KGN56705.1 hypothetical p...	[more]
KAA0049128.1	1.26e-30	78.57	trihelix transcription factor ASIL2 [Cucumis melo var. makuwa]	[more]
XP_038901483.1	1.75e-29	77.38	trihelix transcription factor ASIL2 [Benincasa hispida]	[more]

BLAST of IVF0007930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44730.1	3.0e-06	42.86	Alcohol dehydrogenase transcription factor Myb/SANT-like family protein	[more]
AT4G17060.1	4.8e-04	48.89	FRIGIDA interacting protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31307:SF52	TRANSCRIPTION FACTOR	coord: 29..84
IPR044823	Trihelix transcription factor ASIL1/2-like	PANTHER	PTHR31307	TRIHELIX TRANSCRIPTION FACTOR ASIL2	coord: 29..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0007930.1	IVF0007930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000976	transcription cis-regulatory region binding