IVF0007838 (gene) Melon (IVF77) v1

Overview


Name	IVF0007838
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Cytochrome b6-F complex subunit 5
Location	tig00000662: 86960 .. 87360 (-)
RNA-Seq Expression	IVF0007838
Synteny	IVF0007838

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTACTATCACTAGTTATTTCGGTTTTCTACTAGCAGTTTTAACTATAACCTCAGCTCTATTTATCGGTCTGAACAAGATACGACTTATTTGATTAAAATTCATTGAATGCACAATTCAAAAAAAGAAAGATTTCGGTGTTATTCAATATATTCTATATATTGTAGAGTTCTTTACCTTGTCAATTCAATTTCGAATTCTTGGTCATTGAGATTCATGGGCAATACCGATTAATATTTTAAGGATAGATATTACCTCTCCTTTTCCTCGTTCAACTAAATTGAAATGATTGAAGTTTTTCTATTTGGAATCGTATTAGGTCTAATTCCTATTACTTTGGCTGGATTATTTGTGACCGCATATTTACAATACAGACGGGGGGATCAGTTGGACCTTTGA

mRNA sequence

ATGCCTACTATCACTAGTTATTTCGGTTTTCTACTAGCAGTTTTAACTATAACCTCAGCTCTATTTATCGTTTTTCTATTTGGAATCGTATTAGGTCTAATTCCTATTACTTTGGCTGGATTATTTGTGACCGCATATTTACAATACAGACGGGGGGATCAGTTGGACCTTTGA

Coding sequence (CDS)

ATGCCTACTATCACTAGTTATTTCGGTTTTCTACTAGCAGTTTTAACTATAACCTCAGCTCTATTTATCGTTTTTCTATTTGGAATCGTATTAGGTCTAATTCCTATTACTTTGGCTGGATTATTTGTGACCGCATATTTACAATACAGACGGGGGGATCAGTTGGACCTTTGA

Protein sequence

MPTITSYFGFLLAVLTITSALFIVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL

Homology

[Close]

BLAST of IVF0007838 vs. ExPASy Swiss-Prot
Match: Q3V516 (Cytochrome b6-f complex subunit 5 OS=Acorus calamus OX=4465 GN=petG PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-10
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 24 VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 58
          VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct: 4  VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]

BLAST of IVF0007838 vs. ExPASy Swiss-Prot
Match: Q5QA79 (Cytochrome b6-f complex subunit 5 OS=Acorus gramineus OX=55184 GN=petG PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-10
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 24 VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 58
          VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct: 4  VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]

BLAST of IVF0007838 vs. ExPASy Swiss-Prot
Match: A1EA27 (Cytochrome b6-f complex subunit 5 OS=Agrostis stolonifera OX=63632 GN=petG PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-10
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 24 VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 58
          VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct: 4  VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]

BLAST of IVF0007838 vs. ExPASy Swiss-Prot
Match: Q7FNS7 (Cytochrome b6-f complex subunit 5 OS=Atropa belladonna OX=33113 GN=petG PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-10
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 24 VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 58
          VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct: 4  VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]

BLAST of IVF0007838 vs. ExPASy Swiss-Prot
Match: P69453 (Cytochrome b6-f complex subunit 5 OS=Beta trigyna OX=19769 GN=petG PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-10
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 24 VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 58
          VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct: 4  VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]

BLAST of IVF0007838 vs. ExPASy TrEMBL
Match: A0A0A0KT11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576740 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.2e-18
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MPTITSYFGFLLAVLTITSALFIVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 58
          M TITSYFGFLLAVLTITSALFIVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct: 1  MLTITSYFGFLLAVLTITSALFIVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 57

[Close]

BLAST of IVF0007838 vs. ExPASy TrEMBL
Match: A0A3S3NMV2 (Cytochrome b6-F complex subunit 5 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02722000 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.8e-14
Identity = 52/63 (82.54%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1  MPTITSYFGFLLAVLTITSALFI------VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQ 58
          M TITSYFGFLLA  TIT AL I      VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQ
Sbjct: 13 MTTITSYFGFLLAASTITPALLIKIEMIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQ 72

[Close]

BLAST of IVF0007838 vs. ExPASy TrEMBL
Match: A0A6A5LB28 (Cytochrome b6-f complex subunit 6 OS=Lupinus albus OX=3870 GN=Lal_00028291 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.0e-13
Identity = 56/93 (60.22%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 1  MPTITSYFGFLLAVLTITSALFI------------------------------------V 58
          MPTITSYFGFLLA LTITSALFI                                    V
Sbjct: 1  MPTITSYFGFLLAALTITSALFIGLNIPQFLIVSISNFLVVGIHDITSPFPFKQIQMIEV 60

[Close]

BLAST of IVF0007838 vs. ExPASy TrEMBL
Match: A0A5B6TKA9 (Cytochrome b6-f complex subunit 6 OS=Gossypium australe OX=47621 GN=petG PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.1e-13
Identity = 54/80 (67.50%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 1  MPTITSYFGFLLAVLTITSALFI-----------------------VFLFGIVLGLIPIT 58
          M TITSYFGFLLA LTIT ALFI                       VFLFGIVLGLIPIT
Sbjct: 1  MLTITSYFGFLLAALTITPALFIGLNKIHRTSFFLSPRTNQIEMIEVFLFGIVLGLIPIT 60

[Close]

BLAST of IVF0007838 vs. ExPASy TrEMBL
Match: A0A6A5MQ83 (Cytochrome b6-f complex subunit 6 OS=Lupinus albus OX=3870 GN=Lal_00033879 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-12
Identity = 52/74 (70.27%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 1  MPTITSYFGFLLAVLTITSALFI-------------------VFLFGIVLGLIPITLAGL 56
          MPTITSYFGFLLA LTI SALFI                   VFLFGIVLGLI ITLAGL
Sbjct: 1  MPTITSYFGFLLAALTINSALFIGLRWILPPPFLFKQIQMIEVFLFGIVLGLITITLAGL 60

[Close]

BLAST of IVF0007838 vs. NCBI nr
Match: RWR97765.1 (cytochrome b6-F complex subunit 5 [Cinnamomum micranthum f. kanehirae] >RWR98313.1 cytochrome b6-F complex subunit 5 [Cinnamomum micranthum f. kanehirae] >RWR98318.1 cytochrome b6-F complex subunit 5 [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 87.0 bits (214), Expect = 8.13e-21
Identity = 52/63 (82.54%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1  MPTITSYFGFLLAVLTITSALFI------VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQ 57
          M TITSYFGFLLA  TIT AL I      VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQ
Sbjct: 13 MTTITSYFGFLLAASTITPALLIKIEMIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQ 72

[Close]

BLAST of IVF0007838 vs. NCBI nr
Match: KAF1855872.1 (hypothetical protein Lal_00028291 [Lupinus albus])

HSP 1 Score: 85.1 bits (209), Expect = 7.65e-20
Identity = 56/93 (60.22%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 1  MPTITSYFGFLLAVLTITSALFI------------------------------------V 57
          MPTITSYFGFLLA LTITSALFI                                    V
Sbjct: 1  MPTITSYFGFLLAALTITSALFIGLNIPQFLIVSISNFLVVGIHDITSPFPFKQIQMIEV 60

[Close]

BLAST of IVF0007838 vs. NCBI nr
Match: KAA3441743.1 (cytochrome b6-F complex subunit 5 [Gossypium australe])

HSP 1 Score: 84.3 bits (207), Expect = 1.09e-19
Identity = 54/80 (67.50%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 1  MPTITSYFGFLLAVLTITSALFI-----------------------VFLFGIVLGLIPIT 57
          M TITSYFGFLLA LTIT ALFI                       VFLFGIVLGLIPIT
Sbjct: 1  MLTITSYFGFLLAALTITPALFIGLNKIHRTSFFLSPRTNQIEMIEVFLFGIVLGLIPIT 60

[Close]

BLAST of IVF0007838 vs. NCBI nr
Match: MQL82473.1 (hypothetical protein [Colocasia esculenta])

HSP 1 Score: 82.4 bits (202), Expect = 3.82e-19
Identity = 49/61 (80.33%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 1  MPTITSYFGFLLAVLTITSALFI------VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQ 55
          MPTITSYFGFLLA  TIT AL I      V LFGI+LGLIPITLAGLFVTAYLQYRRGDQ
Sbjct: 1  MPTITSYFGFLLAASTITPALLIEIKMIEVLLFGIMLGLIPITLAGLFVTAYLQYRRGDQ 60

[Close]

BLAST of IVF0007838 vs. NCBI nr
Match: KAF1876954.1 (hypothetical protein Lal_00033879 [Lupinus albus])

HSP 1 Score: 82.4 bits (202), Expect = 1.52e-18
Identity = 52/74 (70.27%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 1  MPTITSYFGFLLAVLTITSALFI-------------------VFLFGIVLGLIPITLAGL 55
          MPTITSYFGFLLA LTI SALFI                   VFLFGIVLGLI ITLAGL
Sbjct: 1  MPTITSYFGFLLAALTINSALFIGLRWILPPPFLFKQIQMIEVFLFGIVLGLITITLAGL 60

[Close]

BLAST of IVF0007838 vs. TAIR 10
Match: ATCG00600.1 (PETG )

HSP 1 Score: 64.7 bits (156), Expect = 2.8e-11
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 24 VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLD 57
          VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLD
Sbjct: 4  VFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLD 36

The following BLAST results are available for this feature:

BLAST of IVF0007838 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3V516	1.3e-10	100.00	Cytochrome b6-f complex subunit 5 OS=Acorus calamus OX=4465 GN=petG PE=3 SV=1	[more]
Q5QA79	1.3e-10	100.00	Cytochrome b6-f complex subunit 5 OS=Acorus gramineus OX=55184 GN=petG PE=3 SV=1	[more]
A1EA27	1.3e-10	100.00	Cytochrome b6-f complex subunit 5 OS=Agrostis stolonifera OX=63632 GN=petG PE=3 ...	[more]
Q7FNS7	1.3e-10	100.00	Cytochrome b6-f complex subunit 5 OS=Atropa belladonna OX=33113 GN=petG PE=3 SV=...	[more]
P69453	1.3e-10	100.00	Cytochrome b6-f complex subunit 5 OS=Beta trigyna OX=19769 GN=petG PE=3 SV=1	[more]

BLAST of IVF0007838 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT11	5.2e-18	98.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576740 PE=3 SV=1	[more]
A0A3S3NMV2	7.8e-14	82.54	Cytochrome b6-F complex subunit 5 OS=Cinnamomum micranthum f. kanehirae OX=33745...	[more]
A0A6A5LB28	3.0e-13	60.22	Cytochrome b6-f complex subunit 6 OS=Lupinus albus OX=3870 GN=Lal_00028291 PE=3 ...	[more]
A0A5B6TKA9	5.1e-13	67.50	Cytochrome b6-f complex subunit 6 OS=Gossypium australe OX=47621 GN=petG PE=3 SV...	[more]
A0A6A5MQ83	1.5e-12	70.27	Cytochrome b6-f complex subunit 6 OS=Lupinus albus OX=3870 GN=Lal_00033879 PE=3 ...	[more]

BLAST of IVF0007838 vs. NCBI nr


Match Name	E-value	Identity	Description
RWR97765.1	8.13e-21	82.54	cytochrome b6-F complex subunit 5 [Cinnamomum micranthum f. kanehirae] >RWR98313...	[more]
KAF1855872.1	7.65e-20	60.22	hypothetical protein Lal_00028291 [Lupinus albus]	[more]
KAA3441743.1	1.09e-19	67.50	cytochrome b6-F complex subunit 5 [Gossypium australe]	[more]
MQL82473.1	3.82e-19	80.33	hypothetical protein [Colocasia esculenta]	[more]
KAF1876954.1	1.52e-18	70.27	hypothetical protein Lal_00033879 [Lupinus albus]	[more]

BLAST of IVF0007838 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00600.1	2.8e-11	100.00	PETG	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003683	Cytochrome b6/f complex, subunit 5	PFAM	PF02529	PetG	coord: 25..56 e-value: 4.7E-19 score: 67.9
IPR003683	Cytochrome b6/f complex, subunit 5	PANTHER	PTHR35516	FAMILY NOT NAMED	coord: 24..57
IPR003683	Cytochrome b6/f complex, subunit 5	HAMAP	MF_00432	Cytb6_f_PetG	coord: 21..56 score: 15.64735
IPR007802	Cytochrome b6-f complex subunit 6	PFAM	PF05115	PetL	coord: 1..23 e-value: 1.8E-7 score: 31.0
None	No IPR available	PANTHER	PTHR35516:SF9	CYTOCHROME B6-F COMPLEX SUBUNIT 5	coord: 24..57
IPR036099	Cytochrome b6/f complex, subunit 5 superfamily	SUPERFAMILY	103446	PetG subunit of the cytochrome b6f complex	coord: 29..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0007838.2	IVF0007838.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017004	cytochrome complex assembly
biological_process	GO:0022900	electron transport chain
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009512	cytochrome b6f complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0045158	electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
molecular_function	GO:0009055	electron transfer activity