IVF0007640 (gene) Melon (IVF77) v1

Overview


Name	IVF0007640
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	CUE domain-containing 5
Location	chr12: 18710939 .. 18711408 (-)
RNA-Seq Expression	IVF0007640
Synteny	IVF0007640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAGATGGGATGAAATATTTTCTCTTCCAGTACAGAATCAGCCAACCTTGGTTTTTTCTTCAGCTGATCTTATGTGGTCTAAGGTAGAAGGATGTGACAACATGGATAGAGTTGTTGTAATCCCTTTTGGTAGAGTTGGTGATTTTGTGCGGGATGAGTCTTCAAATAAAAGTTGTCCAACCAGATTTCATGTTGAAGCAAGGCGGCGACGAGCATCAAAAGCACCTTCCAAGGCAAAAGTTGATGGTGTACTAGAATGCATTTTGTAAGTCCCACATTTATGTATTTCTATAATATGTACAGATGTTTTCATGTAATTATTTTTATTGTTTCTTCAAGTTTAAGAGTTTAGTTATTTCATTGAATATGTAGATATTGGTGTTTGCTTGGACCTGATGACCAGGAATTAGCAATGTCAGCATTATGTTCTCCTTCATGCATAACCATGGTGGCAAATTGTATGTAA

mRNA sequence

ATGTCCAGATGGGATGAAATATTTTCTCTTCCAGTACAGAATCAGCCAACCTTGGTTTTTTCTTCAGCTGATCTTATGTGGTCTAAGGTAGAAGGATGTGACAACATGGATAGAGTTGTTGTAATCCCTTTTGGTAGAGTTGGTGATTTTGTGCGGGATGAGTCTTCAAATAAAAGTTGTCCAACCAGATTTCATGTTGAAGCAAGGCGGCGACGAGCATCAAAAGCACCTTCCAAGGCAAAAGTTGATGGTGTACTAGAATGCATTTTATATTGGTGTTTGCTTGGACCTGATGACCAGGAATTAGCAATGTCAGCATTATGTTCTCCTTCATGCATAACCATGGTGGCAAATTGTATGTAA

Coding sequence (CDS)

ATGTCCAGATGGGATGAAATATTTTCTCTTCCAGTACAGAATCAGCCAACCTTGGTTTTTTCTTCAGCTGATCTTATGTGGTCTAAGGTAGAAGGATGTGACAACATGGATAGAGTTGTTGTAATCCCTTTTGGTAGAGTTGGTGATTTTGTGCGGGATGAGTCTTCAAATAAAAGTTGTCCAACCAGATTTCATGTTGAAGCAAGGCGGCGACGAGCATCAAAAGCACCTTCCAAGGCAAAAGTTGATGGTGTACTAGAATGCATTTTATATTGGTGTTTGCTTGGACCTGATGACCAGGAATTAGCAATGTCAGCATTATGTTCTCCTTCATGCATAACCATGGTGGCAAATTGTATGTAA

Protein sequence

MSRWDEIFSLPVQNQPTLVFSSADLMWSKVEGCDNMDRVVVIPFGRVGDFVRDESSNKSCPTRFHVEARRRRASKAPSKAKVDGVLECILYWCLLGPDDQELAMSALCSPSCITMVANCM

Homology

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BLAST of IVF0007640 vs. ExPASy TrEMBL
Match: A0A5A7T5N1 (CUE domain-containing 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9475G00090 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.9e-62
Identity = 118/120 (98.33%), Postives = 118/120 (98.33%), Query Frame = 0


Query: 1   MSRWDEIFSLPVQNQPTLVFSSADLMWSKVEGCDNMDRVVVIPFGRVGDFVRDESSNKSC 60
           MSRWDEI SLPVQNQPTLVFSSADLMWSKVEGCDNMDRVVVIPF RVGDFVRDESSNKSC
Sbjct: 1   MSRWDEIVSLPVQNQPTLVFSSADLMWSKVEGCDNMDRVVVIPFARVGDFVRDESSNKSC 60

Query: 61  PTRFHVEARRRRASKAPSKAKVDGVLECILYWCLLGPDDQELAMSALCSPSCITMVANCM 120
           PTRFHVEARRRRASKAPSKAKVDGVLECILYWCLLGPDDQELAMSALCSPSCITMVANCM
Sbjct: 61  PTRFHVEARRRRASKAPSKAKVDGVLECILYWCLLGPDDQELAMSALCSPSCITMVANCM 120

[Close]

BLAST of IVF0007640 vs. ExPASy TrEMBL
Match: A0A5D3C2W2 (CUE domain-containing 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00500 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.2e-48
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 26  MWSKVEGCDNMDRVVVIPFGRVGDFVRDESSNKSCPTRFHVEARRRRASKAPSKAKVDGV 85
           MWSKVEGCDNMDRVVVIPFGRVGDFVRDESSNKSCPTRFHVEARRRRASKAPSKAKVDGV
Sbjct: 1   MWSKVEGCDNMDRVVVIPFGRVGDFVRDESSNKSCPTRFHVEARRRRASKAPSKAKVDGV 60

Query: 86  LECILYWCLLGPDDQELAMSALCSPSCITMVANCM 121
           LECILYWCLLGPDDQELAMSALCSPSCITMVANCM
Sbjct: 61  LECILYWCLLGPDDQELAMSALCSPSCITMVANCM 95

[Close]

BLAST of IVF0007640 vs. ExPASy TrEMBL
Match: A0A1S3BBT3 (uncharacterized protein LOC103488340 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488340 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.6e-40
Identity = 85/100 (85.00%), Postives = 87/100 (87.00%), Query Frame = 0


Query: 1   MSRWDEIFSLPVQNQPTLVFSSADLMWSKVEGC-DNMDRVVVIPFGRVGDFVRDESSNKS 60
           M+RWDEIFSLPVQN PTL FSSADL+WSKVEG  DNMDRV VIPF RVGDFVR ESSNK 
Sbjct: 20  MARWDEIFSLPVQNPPTLEFSSADLVWSKVEGWRDNMDRVAVIPFARVGDFVRGESSNKE 79

Query: 61  CPTRFHVEARRRRASKAPSKAKVDGVLECILYWCLLGPDD 100
           CPTRFHVEARRRRA KAP KAKVDGVLE ILYWC  GPDD
Sbjct: 80  CPTRFHVEARRRRALKAPFKAKVDGVLEYILYWCSFGPDD 119

[Close]

BLAST of IVF0007640 vs. ExPASy TrEMBL
Match: A0A5A7T2B2 (Zinc ion binding protein isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9475G00100 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.6e-40
Identity = 85/100 (85.00%), Postives = 87/100 (87.00%), Query Frame = 0


Query: 1   MSRWDEIFSLPVQNQPTLVFSSADLMWSKVEGC-DNMDRVVVIPFGRVGDFVRDESSNKS 60
           M+RWDEIFSLPVQN PTL FSSADL+WSKVEG  DNMDRV VIPF RVGDFVR ESSNK 
Sbjct: 1   MARWDEIFSLPVQNPPTLEFSSADLVWSKVEGWRDNMDRVAVIPFARVGDFVRGESSNKE 60

Query: 61  CPTRFHVEARRRRASKAPSKAKVDGVLECILYWCLLGPDD 100
           CPTRFHVEARRRRA KAP KAKVDGVLE ILYWC  GPDD
Sbjct: 61  CPTRFHVEARRRRALKAPFKAKVDGVLEYILYWCSFGPDD 100

[Close]

BLAST of IVF0007640 vs. ExPASy TrEMBL
Match: A0A0A0LYJ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G538200 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.6e-40
Identity = 85/100 (85.00%), Postives = 87/100 (87.00%), Query Frame = 0


Query: 1   MSRWDEIFSLPVQNQPTLVFSSADLMWSKVEGC-DNMDRVVVIPFGRVGDFVRDESSNKS 60
           M+RWDEIFSLPVQN PTL FSSADL+WSKVEG  DNMDRV VIPF RVGDFVR ESSNK 
Sbjct: 1   MARWDEIFSLPVQNPPTLEFSSADLVWSKVEGWRDNMDRVAVIPFARVGDFVRGESSNKE 60

Query: 61  CPTRFHVEARRRRASKAPSKAKVDGVLECILYWCLLGPDD 100
           CPTRFHVEARRRRA KAP KAKVDGVLE ILYWC  GPDD
Sbjct: 61  CPTRFHVEARRRRALKAPFKAKVDGVLEYILYWCSFGPDD 100

[Close]

BLAST of IVF0007640 vs. NCBI nr
Match: KAA0036917.1 (CUE domain-containing 5 [Cucumis melo var. makuwa])

HSP 1 Score: 244 bits (623), Expect = 1.79e-81
Identity = 118/120 (98.33%), Postives = 118/120 (98.33%), Query Frame = 0


Query: 1   MSRWDEIFSLPVQNQPTLVFSSADLMWSKVEGCDNMDRVVVIPFGRVGDFVRDESSNKSC 60
           MSRWDEI SLPVQNQPTLVFSSADLMWSKVEGCDNMDRVVVIPF RVGDFVRDESSNKSC
Sbjct: 1   MSRWDEIVSLPVQNQPTLVFSSADLMWSKVEGCDNMDRVVVIPFARVGDFVRDESSNKSC 60

Query: 61  PTRFHVEARRRRASKAPSKAKVDGVLECILYWCLLGPDDQELAMSALCSPSCITMVANCM 120
           PTRFHVEARRRRASKAPSKAKVDGVLECILYWCLLGPDDQELAMSALCSPSCITMVANCM
Sbjct: 61  PTRFHVEARRRRASKAPSKAKVDGVLECILYWCLLGPDDQELAMSALCSPSCITMVANCM 120

[Close]

BLAST of IVF0007640 vs. NCBI nr
Match: TYK05542.1 (CUE domain-containing 5 [Cucumis melo var. makuwa])

HSP 1 Score: 199 bits (506), Expect = 5.64e-64
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 26  MWSKVEGCDNMDRVVVIPFGRVGDFVRDESSNKSCPTRFHVEARRRRASKAPSKAKVDGV 85
           MWSKVEGCDNMDRVVVIPFGRVGDFVRDESSNKSCPTRFHVEARRRRASKAPSKAKVDGV
Sbjct: 1   MWSKVEGCDNMDRVVVIPFGRVGDFVRDESSNKSCPTRFHVEARRRRASKAPSKAKVDGV 60

Query: 86  LECILYWCLLGPDDQELAMSALCSPSCITMVANCM 120
           LECILYWCLLGPDDQELAMSALCSPSCITMVANCM
Sbjct: 61  LECILYWCLLGPDDQELAMSALCSPSCITMVANCM 95

[Close]

BLAST of IVF0007640 vs. NCBI nr
Match: XP_004135549.1 (uncharacterized protein LOC101211068 [Cucumis sativus] >XP_031745229.1 uncharacterized protein LOC101211068 [Cucumis sativus] >KGN65922.1 hypothetical protein Csa_023281 [Cucumis sativus])

HSP 1 Score: 172 bits (435), Expect = 5.75e-47
Identity = 85/102 (83.33%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 1   MSRWDEIFSLPVQNQPTLVFSSADLMWSKVEGC-DNMDRVVVIPFGRVGDFVRDESSNKS 60
           M+RWDEIFSLPVQN PTL FSSADL+WSKVEG  DNMDRV VIPF RVGDFVR ESSNK 
Sbjct: 1   MARWDEIFSLPVQNPPTLEFSSADLVWSKVEGWRDNMDRVAVIPFARVGDFVRGESSNKE 60

Query: 61  CPTRFHVEARRRRASKAPSKAKVDGVLECILYWCLLGPDDQE 101
           CPTRFHVEARRRRA KAP KAKVDGVLE ILYWC  GPDD  
Sbjct: 61  CPTRFHVEARRRRALKAPFKAKVDGVLEYILYWCSFGPDDHR 102

[Close]

BLAST of IVF0007640 vs. NCBI nr
Match: XP_008445298.1 (PREDICTED: uncharacterized protein LOC103488340 isoform X2 [Cucumis melo] >KAA0036918.1 Zinc ion binding protein isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 172 bits (435), Expect = 5.75e-47
Identity = 85/102 (83.33%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 1   MSRWDEIFSLPVQNQPTLVFSSADLMWSKVEGC-DNMDRVVVIPFGRVGDFVRDESSNKS 60
           M+RWDEIFSLPVQN PTL FSSADL+WSKVEG  DNMDRV VIPF RVGDFVR ESSNK 
Sbjct: 1   MARWDEIFSLPVQNPPTLEFSSADLVWSKVEGWRDNMDRVAVIPFARVGDFVRGESSNKE 60

Query: 61  CPTRFHVEARRRRASKAPSKAKVDGVLECILYWCLLGPDDQE 101
           CPTRFHVEARRRRA KAP KAKVDGVLE ILYWC  GPDD  
Sbjct: 61  CPTRFHVEARRRRALKAPFKAKVDGVLEYILYWCSFGPDDHR 102

[Close]

BLAST of IVF0007640 vs. NCBI nr
Match: XP_008445266.1 (PREDICTED: uncharacterized protein LOC103488340 isoform X1 [Cucumis melo] >XP_008445273.1 PREDICTED: uncharacterized protein LOC103488340 isoform X1 [Cucumis melo] >XP_008445282.1 PREDICTED: uncharacterized protein LOC103488340 isoform X1 [Cucumis melo])

HSP 1 Score: 172 bits (435), Expect = 6.12e-47
Identity = 85/102 (83.33%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 1   MSRWDEIFSLPVQNQPTLVFSSADLMWSKVEGC-DNMDRVVVIPFGRVGDFVRDESSNKS 60
           M+RWDEIFSLPVQN PTL FSSADL+WSKVEG  DNMDRV VIPF RVGDFVR ESSNK 
Sbjct: 20  MARWDEIFSLPVQNPPTLEFSSADLVWSKVEGWRDNMDRVAVIPFARVGDFVRGESSNKE 79

Query: 61  CPTRFHVEARRRRASKAPSKAKVDGVLECILYWCLLGPDDQE 101
           CPTRFHVEARRRRA KAP KAKVDGVLE ILYWC  GPDD  
Sbjct: 80  CPTRFHVEARRRRALKAPFKAKVDGVLEYILYWCSFGPDDHR 121

[Close]

BLAST of IVF0007640 vs. TAIR 10
Match: AT4G13970.1 (zinc ion binding )

HSP 1 Score: 141.4 bits (355), Expect = 4.9e-34
Identity = 67/100 (67.00%), Postives = 76/100 (76.00%), Query Frame = 0


Query: 1   MSRWDEIFSLPVQNQPTLVFSSADLMWSKVEGC-DNMDRVVVIPFGRVGDFVRDESSNKS 60
           M+RWD+IFSLPVQN     FSS DL+WSKVEG  DN+DR+ +IP+ RV DFVR E SNK 
Sbjct: 1   MARWDQIFSLPVQNPTLPEFSSTDLVWSKVEGYRDNIDRLALIPYTRVDDFVRGECSNKD 60

Query: 61  CPTRFHVEARRRRASKAPSKAKVDGVLECILYWCLLGPDD 100
           CPT FHVEARRR+A     K KVDG+LE ILYWC  GPDD
Sbjct: 61  CPTSFHVEARRRKAKGKKYKPKVDGILEYILYWCSFGPDD 100

[Close]

BLAST of IVF0007640 vs. TAIR 10
Match: AT1G60560.2 (SWIM zinc finger family protein )

HSP 1 Score: 87.4 bits (215), Expect = 8.4e-18
Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 5   DEIFSLPVQNQPTLVFSSADLMWSKVEGCDNMDRVVVIPFGRVGDFVRDESSNKSCPTRF 64
           + +  +PVQN     FS ADL W+K    ++ D+V ++P+ RV +F+  E SN  CPTRF
Sbjct: 5   ESLEEIPVQNPQVEDFSWADLTWTKFGTSEHHDQVALVPYARVDEFIIGECSNAECPTRF 64

Query: 65  HVEARRRRASKAPSKAKVDGVLECILYWCLLGPDD 100
           H+E  R+R+  +  + K D  LE  LYWC  GP++
Sbjct: 65  HIERGRKRSRGSLKEYKSDEYLEYRLYWCSFGPEN 99

[Close]

BLAST of IVF0007640 vs. TAIR 10
Match: AT1G60560.1 (SWIM zinc finger family protein )

HSP 1 Score: 87.4 bits (215), Expect = 8.4e-18
Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 5   DEIFSLPVQNQPTLVFSSADLMWSKVEGCDNMDRVVVIPFGRVGDFVRDESSNKSCPTRF 64
           + +  +PVQN     FS ADL W+K    ++ D+V ++P+ RV +F+  E SN  CPTRF
Sbjct: 5   ESLEEIPVQNPQVEDFSWADLTWTKFGTSEHHDQVALVPYARVDEFIIGECSNAECPTRF 64

Query: 65  HVEARRRRASKAPSKAKVDGVLECILYWCLLGPDD 100
           H+E  R+R+  +  + K D  LE  LYWC  GP++
Sbjct: 65  HIERGRKRSRGSLKEYKSDEYLEYRLYWCSFGPEN 99

The following BLAST results are available for this feature:

BLAST of IVF0007640 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0007640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T5N1	1.9e-62	98.33	CUE domain-containing 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C2W2	1.2e-48	100.00	CUE domain-containing 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BBT3	1.6e-40	85.00	uncharacterized protein LOC103488340 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7T2B2	1.6e-40	85.00	Zinc ion binding protein isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A0A0LYJ7	1.6e-40	85.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G538200 PE=4 SV=1	[more]

BLAST of IVF0007640 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036917.1	1.79e-81	98.33	CUE domain-containing 5 [Cucumis melo var. makuwa]	[more]
TYK05542.1	5.64e-64	100.00	CUE domain-containing 5 [Cucumis melo var. makuwa]	[more]
XP_004135549.1	5.75e-47	83.33	uncharacterized protein LOC101211068 [Cucumis sativus] >XP_031745229.1 uncharact...	[more]
XP_008445298.1	5.75e-47	83.33	PREDICTED: uncharacterized protein LOC103488340 isoform X2 [Cucumis melo] >KAA00...	[more]
XP_008445266.1	6.12e-47	83.33	PREDICTED: uncharacterized protein LOC103488340 isoform X1 [Cucumis melo] >XP_00...	[more]

BLAST of IVF0007640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13970.1	4.9e-34	67.00	zinc ion binding	[more]
AT1G60560.2	8.4e-18	41.05	SWIM zinc finger family protein	[more]
AT1G60560.1	8.4e-18	41.05	SWIM zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33977	ZINC ION BINDING PROTEIN	coord: 1..102
None	No IPR available	PANTHER	PTHR33977:SF1	ZINC ION BINDING PROTEIN	coord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0007640.1	IVF0007640.1	mRNA