IVF0007617 (gene) Melon (IVF77) v1

Overview


Name	IVF0007617
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	rubisco accumulation factor 1, chloroplastic
Location	chr02: 16935019 .. 16936382 (-)
RNA-Seq Expression	IVF0007617
Synteny	IVF0007617

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTCCTCCACCATCACCAACGCCAATTCTCTCACTTCTCTCTCCTCCATCGCCCACACCACCGCCATCTTCCTTCATCAACCCATAGACTCCCCTCTCCGCCTCTTCCTCCGTCGCCGTTCAAACCCCATTTCCGCCATTATTAACCCTTCCCCTTCCCCCTTAGCCGCAAAGCAACAAGTGTACCAGCCATTCCGCCCCCCTCCCTCTCCTCTTCCCCCTCAATACCGCTCCCTCGACACCGAAGGCAAGCTCAATGTCCTCTCCAACCGCCTCGGCCTCTGGTTCGAGTACGCCCCCCTCATTTCCTCCTTGCTTCAAGAGGGCTTCACTCCTCCCACTCTAGAAGAAATCACCGGAATCAGCGGTGTCCAGCAGAACACCTTCGTCGTTGGCGCTCAGGTTCGCGAATCTTTAGTTCAGTCCAATGACTCCGATCCAGATGTAATCGCTTCCTTCGATACTAGTGGTGCGGAGTTGCTCTATGAAATTCGGCTTCTAAGTACTGAGAAACGCGTTGCGGCGGCCAAATATATAGTGGAGAACAGGCTTGATAGCAAAGGCGCCCAGGATCTGGCTCGAGCGATAAAGGATTTTCCTCGACGAAAAGGGGATAGAGGTTGGGAGTGTTTTGATTACGATTCTGCTGGGGATTGTTTGGCGTATATGTATTACAGGTTGAGTAGAGAGTACAATAATTCATCGGAGCGGAGGACGGCGGCGTTGGAGGAGGCGTTGAAAGTGGTAGTGACGGAGAAGGCGAGGAATCTGATTGTTGGGGATTTGGAGAGGAAAGGAGATGGGAAGGACGGGGTTGAAGAAGAAACTGGAGCGGGAGTTAGGGTTCCGGTGGTGCGGCTGAAGATTGGGGAGGTTGCGGAGGCGACGAAGGTGGTGGTGATGCCGGTGTGCAAGGCAGGGGAAGGGGAAAAGGGAGTTGGAGAGGCGCCAATGGAGGTGAGAAGCGAGGGAGACTTCGGGGTTGTGGTGGCGGAAAGGGGTGGAGCAGGTGGGTAGTGCTGCCGGGATGGGAGCCGGTGGCGGGGTTGGTGAAGGGTGGTGGCGTAGTGGTGGCGTTTAAGGATGCGAGGGTTCTGCCATGGCGAGTGAACAGGTGGTACAAGGAGGAGCCAATTCTGGTAGTGGCTGATCGGAGTAGGAAGGAGGTGGTGGCAGGAGATGGATTTTATCTGATGGGTGGAACTGTGGGCGGCGGAGATGGAGGTGGGGAGTTGAAGGTGGAGAGAGGAAATGCATTGACGGAAATGGGAGTGAAGGAGAGTTTAGGAACGGTAGTGTTGGTGGTTAGGCCGCCAAAGGAGATGGAAGATGATCAATTAAGTGATGAAGATTGGGATTAA

mRNA sequence

ATGCTCTCCTCCACCATCACCAACGCCAATTCTCTCACTTCTCTCTCCTCCATCGCCCACACCACCGCCATCTTCCTTCATCAACCCATAGACTCCCCTCTCCGCCTCTTCCTCCGTCGCCGTTCAAACCCCATTTCCGCCATTATTAACCCTTCCCCTTCCCCCTTAGCCGCAAAGCAACAAGTGTACCAGCCATTCCGCCCCCCTCCCTCTCCTCTTCCCCCTCAATACCGCTCCCTCGACACCGAAGGCAAGCTCAATGTCCTCTCCAACCGCCTCGGCCTCTGGTTCGAGTACGCCCCCCTCATTTCCTCCTTGCTTCAAGAGGGCTTCACTCCTCCCACTCTAGAAGAAATCACCGGAATCAGCGGTGTCCAGCAGAACACCTTCGTCGTTGGCGCTCAGGTTCGCGAATCTTTAGTTCAGTCCAATGACTCCGATCCAGATGTAATCGCTTCCTTCGATACTAGTGGTGCGGAGTTGCTCTATGAAATTCGGCTTCTAAGTACTGAGAAACGCGTTGCGGCGGCCAAATATATAGTGGAGAACAGGCTTGATAGCAAAGGCGCCCAGGATCTGGCTCGAGCGATAAAGGATTTTCCTCGACGAAAAGGGGATAGAGGTTGGGAGTGTTTTGATTACGATTCTGCTGGGGATTGTTTGGCGTATATGTATTACAGGTTGAGTAGAGAGTACAATAATTCATCGGAGCGGAGGACGGCGGCGTTGGAGGAGGCGTTGAAAGTGGTAGTGACGGAGAAGGCGAGGAATCTGATTGTTGGGGATTTGGAGAGGAAAGGAGATGGGAAGGACGGGGTTGAAGAAGAAACTGGAGCGGGAGTTAGGGTTCCGGTGGTGCGGCTGAAGATTGGGGAGGTTGCGGAGGCGACGAAGGTGGTGGTGATGCCGGTGTGCAAGGCAGGGGAAGGGGAAAAGGGAGTTGGAGAGGCGCCAATGGAGGGGTGGAGCAGGTGGGTAGTGCTGCCGGGATGGGAGCCGGTGGCGGGGTTGGTGAAGGGTGGTGGCGTAGTGGTGGCGTTTAAGGATGCGAGGGTTCTGCCATGGCGAGTGAACAGGTGGTACAAGGAGGAGCCAATTCTGGTAGTGGCTGATCGGAGTAGGAAGGAGGTGGTGGCAGGAGATGGATTTTATCTGATGGGTGGAACTGTGGGCGGCGGAGATGGAGGTGGGGAGTTGAAGGTGGAGAGAGGAAATGCATTGACGGAAATGGGAGTGAAGGAGAGTTTAGGAACGGTAGTGTTGGTGGTTAGGCCGCCAAAGGAGATGGAAGATGATCAATTAAGTGATGAAGATTGGGATTAA

Coding sequence (CDS)

ATGCTCTCCTCCACCATCACCAACGCCAATTCTCTCACTTCTCTCTCCTCCATCGCCCACACCACCGCCATCTTCCTTCATCAACCCATAGACTCCCCTCTCCGCCTCTTCCTCCGTCGCCGTTCAAACCCCATTTCCGCCATTATTAACCCTTCCCCTTCCCCCTTAGCCGCAAAGCAACAAGTGTACCAGCCATTCCGCCCCCCTCCCTCTCCTCTTCCCCCTCAATACCGCTCCCTCGACACCGAAGGCAAGCTCAATGTCCTCTCCAACCGCCTCGGCCTCTGGTTCGAGTACGCCCCCCTCATTTCCTCCTTGCTTCAAGAGGGCTTCACTCCTCCCACTCTAGAAGAAATCACCGGAATCAGCGGTGTCCAGCAGAACACCTTCGTCGTTGGCGCTCAGGTTCGCGAATCTTTAGTTCAGTCCAATGACTCCGATCCAGATGTAATCGCTTCCTTCGATACTAGTGGTGCGGAGTTGCTCTATGAAATTCGGCTTCTAAGTACTGAGAAACGCGTTGCGGCGGCCAAATATATAGTGGAGAACAGGCTTGATAGCAAAGGCGCCCAGGATCTGGCTCGAGCGATAAAGGATTTTCCTCGACGAAAAGGGGATAGAGGTTGGGAGTGTTTTGATTACGATTCTGCTGGGGATTGTTTGGCGTATATGTATTACAGGTTGAGTAGAGAGTACAATAATTCATCGGAGCGGAGGACGGCGGCGTTGGAGGAGGCGTTGAAAGTGGTAGTGACGGAGAAGGCGAGGAATCTGATTGTTGGGGATTTGGAGAGGAAAGGAGATGGGAAGGACGGGGTTGAAGAAGAAACTGGAGCGGGAGTTAGGGTTCCGGTGGTGCGGCTGAAGATTGGGGAGGTTGCGGAGGCGACGAAGGTGGTGGTGATGCCGGTGTGCAAGGCAGGGGAAGGGGAAAAGGGAGTTGGAGAGGCGCCAATGGAGGGGTGGAGCAGGTGGGTAGTGCTGCCGGGATGGGAGCCGGTGGCGGGGTTGGTGAAGGGTGGTGGCGTAGTGGTGGCGTTTAAGGATGCGAGGGTTCTGCCATGGCGAGTGAACAGGTGGTACAAGGAGGAGCCAATTCTGGTAGTGGCTGATCGGAGTAGGAAGGAGGTGGTGGCAGGAGATGGATTTTATCTGATGGGTGGAACTGTGGGCGGCGGAGATGGAGGTGGGGAGTTGAAGGTGGAGAGAGGAAATGCATTGACGGAAATGGGAGTGAAGGAGAGTTTAGGAACGGTAGTGTTGGTGGTTAGGCCGCCAAAGGAGATGGAAGATGATCAATTAAGTGATGAAGATTGGGATTAA

Protein sequence

MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQQVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEITGISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYIVENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRTAALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEAPMEGWSRWVVLPGWEPVAGLVKGGGVVVAFKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNALTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD

Homology

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BLAST of IVF0007617 vs. ExPASy Swiss-Prot
Match: Q9SR19 (Rubisco accumulation factor 1.2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RAF1.2 PE=1 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 7.4e-117
Identity = 243/457 (53.17%), Postives = 309/457 (67.61%), Query Frame = 0


Query: 11  SLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPS-------PSPLAAKQQVY 70
           SL S      TT      PI  P+    R  S  ++A + P        P    A+QQ+Y
Sbjct: 6   SLISSPFTQSTTHGLFTNPITRPVNPLPRTVSFTVTASMIPKRSSANMIPKNPPARQQLY 65

Query: 71  QPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEITGIS 130
           QPFRPP SP+P Q+RSLD+ GK+ +L+ R+ LWFEYAPLISSL  +GFTPPT+EE+TGIS
Sbjct: 66  QPFRPPSSPIPTQFRSLDSAGKIEILAGRMALWFEYAPLISSLYTDGFTPPTIEELTGIS 125

Query: 131 GVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYIVEN 190
            ++QN  +VGAQVR+S++QS   +P++I++FDT GAELLYEIRLLST +RVAAA +I++ 
Sbjct: 126 SIEQNRLIVGAQVRDSILQS-IHEPELISAFDTGGAELLYEIRLLSTTQRVAAATFIIDR 185

Query: 191 RLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRTAAL 250
            +DSKGAQDLARAIKD+P R+GD GW  FDY+  GDCL+++YYR SRE  N S++RT+ L
Sbjct: 186 NIDSKGAQDLARAIKDYPNRRGDVGWLDFDYNLPGDCLSFLYYRQSRENKNPSDQRTSML 245

Query: 251 EEALKVVVTEKARNL----IVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKV 310
            +AL V  +EKA+N     + GD E + + +   +EE    +R+PVVRLK GEVAEAT V
Sbjct: 246 LQALGVAESEKAKNRLNTELYGDKEAEKEKEKKKKEEEVKAIRIPVVRLKFGEVAEATSV 305

Query: 311 VVMPVCKAGEGEKGVGEAPME--------------GWSRWVVLPGWEPVAGLVKGGGVVV 370
           VV+PVCKA EGEK + EAPME              GW RWVVLP W PVA + K GGV V
Sbjct: 306 VVLPVCKAEEGEKKILEAPMEIIAGGDFKVVEAEKGWKRWVVLPSWNPVAAIGK-GGVAV 365

Query: 371 AFKDAR-VLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERG 430
           +F+D R VLPW      KEEP+LVVADR R  V A DG+YL+    G       LK+E+G
Sbjct: 366 SFRDDRKVLPWD----GKEEPLLVVADRVRNVVEADDGYYLVVAENG-------LKLEKG 425

Query: 431 NALTEMGVKESLGTVVLVVRPPKEMEDD-QLSDEDWD 441
           + L    VKESLG VVLVVRPP+E +DD Q S ++WD
Sbjct: 426 SDLKAREVKESLGMVVLVVRPPREDDDDWQTSHQNWD 449

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BLAST of IVF0007617 vs. ExPASy Swiss-Prot
Match: Q9LKR8 (Rubisco accumulation factor 1.1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RAF1.1 PE=1 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 1.3e-116
Identity = 245/456 (53.73%), Postives = 320/456 (70.18%), Query Frame = 0


Query: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60
           MLS T T  +S  S+ + + T   F  +P+      + +  +   SA+I  S      KQ
Sbjct: 1   MLSLTATTLSS--SIFTQSKTHGFFNTRPV------YRKPFTTITSALIPASNRQAPPKQ 60

Query: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120
           Q+YQPFRPPPSP+PP++RSLDT GK+ VL++RLGLWFEYAPLISSL  EGFTPP++EE+T
Sbjct: 61  QLYQPFRPPPSPIPPKFRSLDTAGKIEVLADRLGLWFEYAPLISSLYTEGFTPPSIEELT 120

Query: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180
           GISGV+QN+ +VGAQVR+SLVQS  + P++IA+FDT+GAELLYEIRLL+T +RVAAA+YI
Sbjct: 121 GISGVEQNSLIVGAQVRDSLVQSG-AKPELIAAFDTNGAELLYEIRLLNTTQRVAAAEYI 180

Query: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240
           V++  D+KGA DLARAIKDFP R+GD G   FDY+  GDCL++M YR SRE+ + SE RT
Sbjct: 181 VDHGFDTKGAGDLARAIKDFPHRRGDVGLGDFDYNLPGDCLSFMLYRKSREHRSPSEIRT 240

Query: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300
             LE+AL+  VTEKA+  ++ +L  + + ++ V+EE    +RVPVVRL+ GEVA A+ VV
Sbjct: 241 TLLEQALETAVTEKAKKAVLRELHGESE-EERVKEEEIKIIRVPVVRLRFGEVAGASSVV 300

Query: 301 VMPVCKAGEGEKGVGEAPME--------------GWSRWVVLPGWEPVAGLVKGGGVVVA 360
           V+PVCKA EGE+ + EAPME               WSRWVVLPGW+PV  + K  GV V+
Sbjct: 301 VLPVCKAEEGEEKLLEAPMEFESGGEFGVVEAEKDWSRWVVLPGWDPVVAVRK--GVAVS 360

Query: 361 FKDAR-VLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGN 420
           F D R VLPW      K E I+VV DR +K V A +G+Y +    GG      +K++RG 
Sbjct: 361 FSDDREVLPWN----GKGEAIMVVIDREKKTVEADNGYYYLVVADGG------MKLDRGL 420

Query: 421 ALTEMGVKESLGTVVLVVRPPKEMEDD-QLSDEDWD 441
            L E GV ESLG VVLVVRPP++ +D+ Q++DEDWD
Sbjct: 421 VLKEKGVNESLGMVVLVVRPPRDDDDEWQINDEDWD 434

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BLAST of IVF0007617 vs. ExPASy Swiss-Prot
Match: Q7XDY9 (Rubisco accumulation factor 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RAF1 PE=2 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 6.5e-89
Identity = 193/415 (46.51%), Postives = 263/415 (63.37%), Query Frame = 0


Query: 52  SPSPLAAKQQVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGF 111
           +P P A   Q+YQPF PPPSPLP +Y+ LD   +L VL +RLGLW EYAPLIS+L +EGF
Sbjct: 69  TPPPTAPPDQLYQPFHPPPSPLPDKYKDLDLGQRLAVLRDRLGLWHEYAPLISALSREGF 128

Query: 112 TPPTLEEITGISGVQQNTFVVGAQVRESLVQSNDSDP-DVIASFDT-SGAELLYEIRLLS 171
           TP ++EE TGISGV+QN+ VV  QVR+SLV      P +++  FD+  G ELLYE+R L+
Sbjct: 129 TPSSIEEATGISGVEQNSVVVATQVRDSLVADEGGFPAELLRYFDSYGGPELLYELRFLN 188

Query: 172 TEKRVAAAKYIVENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLS 231
             +R  AA++ ++ RL+ +G ++LAR++KDFP+R+GD GWE F  D+ GDCLA+  +R S
Sbjct: 189 ARQRADAARHAIDRRLEPRGVRELARSMKDFPQRRGDDGWEAFTRDNPGDCLAFARFRQS 248

Query: 232 REYNNSSERRTAALEEALKVVVTEKARNLIVGDLER--------KGDGKDGVEEETGAGV 291
           RE  + +E   A LE AL+VV TE AR  +  +L+R        + D +DG      A  
Sbjct: 249 REAID-AEDSVAELERALEVVDTEPARARVEAELDRARRKAAGEEVDDEDGAANAAAAAS 308

Query: 292 R--VPVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEAPM--------------EGWSRW 351
           R  VPVVRL  GEVAEAT V+++PV + G+G + +  AP               +GW+RW
Sbjct: 309 RPAVPVVRLMYGEVAEATTVLLLPVVREGDGGEALAHAPRRTRTDADLGMVEVDKGWTRW 368

Query: 352 VVLPGWEPVAGLVKGGGVVVAFKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYL 411
            V+PGW PVA  V G  VV+   D R LPWR     + E +LVVA+R R+EVV  DG Y+
Sbjct: 369 AVVPGWGPVAE-VAGEAVVIELADGRTLPWRS---AEAERVLVVANRGRREVVE-DGIYV 428

Query: 412 MGGTVGGGDGGGELKVERGNALTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 441
           +       +  G L VE+G  L   GV E+   V++VVRPP++ EDD +SD++WD
Sbjct: 429 V-------EREGRLVVEKGRKLAAEGVGEAAAEVLVVVRPPRD-EDDMISDDEWD 469

[Close]

BLAST of IVF0007617 vs. ExPASy Swiss-Prot
Match: B4FR29 (Rubisco accumulation factor 1, chloroplastic OS=Zea mays OX=4577 GN=RAF1 PE=1 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 4.7e-87
Identity = 191/416 (45.91%), Postives = 261/416 (62.74%), Query Frame = 0


Query: 52  SPSPLAAKQQVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGF 111
           +P P+A   Q+YQPF PPPSPLPP  R+LD   +L +L +R+GLW EYAPLISSL ++GF
Sbjct: 62  TPPPMAPPGQLYQPFHPPPSPLPPSLRNLDLSERLQILRDRMGLWHEYAPLISSLSRDGF 121

Query: 112 TPPTLEEITGISGVQQNTFVVGAQVRESLVQSNDS--DPDVIASFDT-SGAELLYEIRLL 171
            P +++E TGISGV+QN  VV +QVR+SL+    +   PD++  FD+  G E+LYE+R L
Sbjct: 122 NPSSIQEATGISGVEQNCLVVASQVRDSLLDDRAAAFPPDLLPYFDSLGGPEVLYELRFL 181

Query: 172 STEKRVAAAKYIVENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRL 231
           +  +R  AA++ +  RL+ KG ++LARA+K FPR +G+ GWE F  DS  DCLA+  +R 
Sbjct: 182 NARQRADAARHAIGYRLEPKGVRELARAMKGFPRWRGEEGWEAFSKDSPADCLAFARFRQ 241

Query: 232 SREYNNSSERRTAALEEALKVVVTEKARNLIVGDLE---RKGDGKDGVEEE-----TGAG 291
           SRE  +  + R A LE AL+VV TE  R  +  +LE   RK  G++ V+EE       A 
Sbjct: 242 SREAIDVQD-RVAELERALQVVETESGRARVELELERARRKAAGEEEVDEEGEEDDAAAS 301

Query: 292 VR--VPVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEAPM--------------EGWSR 351
           +R  V VVRL+ GEVAEAT V+++PV +  +G   +  AP                 W+R
Sbjct: 302 LRPGVTVVRLRYGEVAEATTVILLPVVRETDGVAAMESAPRRAKTDVGLGVVEVDRAWAR 361

Query: 352 WVVLPGWEPVAGLVKGGGVVVAFKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFY 411
           W V+PGW PVA       VVV   D R LPWR++    EEP+LV+A+RS+KEVV  +G Y
Sbjct: 362 WAVVPGWGPVAE-AADDAVVVELADGRRLPWRMS---DEEPVLVIANRSKKEVVE-EGVY 421

Query: 412 LMGGTVGGGDGGGELKVERGNALTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 441
           ++       +  G L VERG  L E G+  +   VV+VVRPPK+ EDD +SDE+WD
Sbjct: 422 VL-------EREGRLVVERGKKLAEQGIAAAAAEVVIVVRPPKD-EDDMVSDEEWD 463

[Close]

BLAST of IVF0007617 vs. ExPASy Swiss-Prot
Match: Q8YLP6 (RuBisCO accumulation factor 1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=raf1 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.9e-24
Identity = 111/386 (28.76%), Postives = 189/386 (48.96%), Query Frame = 0


Query: 68  PPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEITGISGVQQ 127
           PP +P P    +   +  L  L  + G W E+   I+SL + G+ P  + E TG   VQQ
Sbjct: 5   PPNAPNPENATNELAQELLRKLRQKQGNWVEWGQAIASLQKSGYNPQDIFEATGFEPVQQ 64

Query: 128 NTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYIVENRLDS 187
           N  +VG+QV  SL +S  S    +A + T G+++LYE+RLL+ E+R AA      +++D+
Sbjct: 65  NQVIVGSQVYNSLEKSGAS-AATLAHYATRGSDVLYELRLLTHEERAAAGDLTFTHKVDA 124

Query: 188 KGAQDLARAIKDFPR-RKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRTAALEEA 247
             A+++A+AIKDF R R    G+     +  GD +AY  ++L+R+Y++  E R+  +   
Sbjct: 125 DEAREIAKAIKDFSRFRILPEGFS----NHPGDAVAYQAWKLARQYSDLQE-RSRLIARG 184

Query: 248 LKVVVTEKARNLIVGDL-------ERKGDGKDGVEEETGAGVRVPVVRLKIGEV-AEATK 307
           L+   +E AR  I   L       +R          +T     +P +   +G++  +A +
Sbjct: 185 LRFAHSETARKQIEQLLVDFTVVSQRPAPIPPFFRFDTED--ELPRIVPVVGQLPLKAEE 244

Query: 308 VVVMPVCKAGEGEKGVGEAPMEGWSRWVVLPGWEPVAGLVKGGGVVVAFKDARVLPWRVN 367
           +  +P+ +  E  + V      G   WV LPGW+          V++A +D   +    +
Sbjct: 245 LKAVPLVEEIEPFRLV---KFSGEQAWVALPGWQ----------VLLAAEDPVTILATSD 304

Query: 368 RWYKEE-----PILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNALTEMGVK 427
           R+ K+      P+LVV DRS++E    D  Y +       D  GEL  +      E  + 
Sbjct: 305 RFPKQNQTEPGPVLVVVDRSQRE--WNDFSYFV------VDHDGELDFQWFETKPEFPI- 357

Query: 428 ESLGTVVLVVRPPKEMEDDQLSDEDW 440
             LG V+++VR P+ + D+ ++ + W
Sbjct: 365 --LGKVIILVR-PRRILDENVTKDSW 357

[Close]

BLAST of IVF0007617 vs. ExPASy TrEMBL
Match: A0A5D3DZE4 (Rubisco accumulation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001420 PE=4 SV=1)

HSP 1 Score: 851.7 bits (2199), Expect = 1.4e-243
Identity = 440/454 (96.92%), Postives = 440/454 (96.92%), Query Frame = 0


Query: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60
           MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ
Sbjct: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60

Query: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120
           QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120

Query: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180
           GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI
Sbjct: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180

Query: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240
           VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT
Sbjct: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240

Query: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300
           AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV
Sbjct: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300

Query: 301 VMPVCKAGEGEKGVGEAPME--------------GWSRWVVLPGWEPVAGLVKGGGVVVA 360
           VMPVCKAGEGEKGVGEAPME              GWSRWVVLPGWEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420
           FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA
Sbjct: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420

Query: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 441
           LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD
Sbjct: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 454

[Close]

BLAST of IVF0007617 vs. ExPASy TrEMBL
Match: A0A1S3CHL8 (rubisco accumulation factor 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501013 PE=4 SV=1)

HSP 1 Score: 850.5 bits (2196), Expect = 3.1e-243
Identity = 439/454 (96.70%), Postives = 440/454 (96.92%), Query Frame = 0


Query: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60
           MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ
Sbjct: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60

Query: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120
           QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWF+YAPLISSLLQEGFTPPTLEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLEEIT 120

Query: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180
           GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI
Sbjct: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180

Query: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240
           VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT
Sbjct: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240

Query: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300
           AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV
Sbjct: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300

Query: 301 VMPVCKAGEGEKGVGEAPME--------------GWSRWVVLPGWEPVAGLVKGGGVVVA 360
           VMPVCKAGEGEKGVGEAPME              GWSRWVVLPGWEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420
           FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA
Sbjct: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420

Query: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 441
           LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD
Sbjct: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 454

[Close]

BLAST of IVF0007617 vs. ExPASy TrEMBL
Match: A0A5A7VA63 (Rubisco accumulation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00440 PE=4 SV=1)

HSP 1 Score: 849.0 bits (2192), Expect = 9.0e-243
Identity = 439/454 (96.70%), Postives = 439/454 (96.70%), Query Frame = 0


Query: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60
           MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ
Sbjct: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60

Query: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120
           QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120

Query: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180
           GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI
Sbjct: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180

Query: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240
           VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT
Sbjct: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240

Query: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300
           AALEEALKV VTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV
Sbjct: 241 AALEEALKVGVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300

Query: 301 VMPVCKAGEGEKGVGEAPME--------------GWSRWVVLPGWEPVAGLVKGGGVVVA 360
           VMPVCKAGEGEKGVGEAPME              GWSRWVVLPGWEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420
           FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA
Sbjct: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420

Query: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 441
           LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD
Sbjct: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 454

[Close]

BLAST of IVF0007617 vs. ExPASy TrEMBL
Match: A0A0A0LY43 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690280 PE=4 SV=1)

HSP 1 Score: 778.9 bits (2010), Expect = 1.1e-221
Identity = 402/454 (88.55%), Postives = 421/454 (92.73%), Query Frame = 0


Query: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60
           MLSSTITNANSL+SLSSIAHTT+IFLHQP DSPLRLFLRRR NPISAIINPS S LAAKQ
Sbjct: 1   MLSSTITNANSLSSLSSIAHTTSIFLHQPRDSPLRLFLRRRLNPISAIINPSSSSLAAKQ 60

Query: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120
           QVYQPFRPPPSPLPPQYRSLDTEGKLN+LSNRLGLWFEYAPLISSLLQEGFTPP LEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNILSNRLGLWFEYAPLISSLLQEGFTPPVLEEIT 120

Query: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180
           GISGVQQN+F+VGAQVRESL+QSNDSDPDVIASFDT GAELLYEIRLLSTEKR AAAKYI
Sbjct: 121 GISGVQQNSFIVGAQVRESLLQSNDSDPDVIASFDTGGAELLYEIRLLSTEKRAAAAKYI 180

Query: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240
           VENRLDSKGAQDLARA+KDFPRR+GD+GWE FDYD AGDCLAYMYYRLSREYN+S+ERRT
Sbjct: 181 VENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGDCLAYMYYRLSREYNSSTERRT 240

Query: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300
           AALEEALKVVVTEKAR+LIVGDLE KGDGKDGVEEE GA V+VPVVR+KIGEVAEAT VV
Sbjct: 241 AALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGAAVKVPVVRMKIGEVAEATTVV 300

Query: 301 VMPVCKAGEGEKGVGEAPME--------------GWSRWVVLPGWEPVAGLVKGGGVVVA 360
           VMPVCKAGEGEKGVGEAPME              GWSRWVVLPGWEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420
           F+DARVLPWRVNRWYKEEPILVVADRSR+EVVAGDGFYLM    GGGDGGG+LKVERGNA
Sbjct: 361 FEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYLM----GGGDGGGDLKVERGNA 420

Query: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 441
           L EMGVKESLGTV+LVVRPP+E EDDQLSDEDWD
Sbjct: 421 LMEMGVKESLGTVLLVVRPPRETEDDQLSDEDWD 450

[Close]

BLAST of IVF0007617 vs. ExPASy TrEMBL
Match: A0A6J1F451 (rubisco accumulation factor 1.1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439956 PE=4 SV=1)

HSP 1 Score: 641.0 bits (1652), Expect = 3.7e-180
Identity = 348/458 (75.98%), Postives = 383/458 (83.62%), Query Frame = 0


Query: 1   MLSSTITNANSLTSLSSIAHTTAIF-LHQPIDSPLRLFLRRRSNPISAIIN--PSPSPLA 60
           MLS+T   A SL+  ++ AHTT  F LH P   PLRLFLRR  NPISA +N  PSPSPL 
Sbjct: 1   MLSAT-APATSLS--AAAAHTTTTFLLHTP---PLRLFLRRPPNPISASLNPSPSPSPLV 60

Query: 61  AKQQVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLE 120
           AK QVYQPFRPPPSPLP QYRSLD  GKL+VL+NRLGLWFEYAPLISSL+QEGFTPPT+E
Sbjct: 61  AKPQVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIE 120

Query: 121 EITGISGVQQNTFVVGAQVRESLVQS-NDSDPDVIASFDTSGAELLYEIRLLSTEKRVAA 180
           EITGI GVQQNT VVGAQVRESLVQ+ ND+DPD+IA+FDT GAELLYEIRLL+ EKR AA
Sbjct: 121 EITGIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAA 180

Query: 181 AKYIVENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSS 240
           A+YIVENRLD KGAQDLARA+KDFPRR+GD+GWE F+YD  GDCLA+M+YRLSREY+N S
Sbjct: 181 ARYIVENRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMS 240

Query: 241 ERRTAALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEA 300
           E RTAALE+ALKV VTE+AR+LIV DLER+G+GKD VEEE  AGVRVPVVRLKIGEVAEA
Sbjct: 241 EARTAALEDALKVAVTEEARSLIVRDLEREGEGKDEVEEEIEAGVRVPVVRLKIGEVAEA 300

Query: 301 TKVVVMPVCKAGEGEKGVGEAPM--------------EGWSRWVVLPGWEPVAGLVKGGG 360
           T VVV+PVC   EG KGVGEAPM              EGW RWVVLPGWEP+AGL K GG
Sbjct: 301 TTVVVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVAEEGWRRWVVLPGWEPIAGLGK-GG 360

Query: 361 VVVAFKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVE 420
           VVVAFKDAR LPWRVNRWYKEE ILVVADRSRKEV AGDGFYL G T  G D  GELKV+
Sbjct: 361 VVVAFKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGAT--GSD--GELKVQ 420

Query: 421 RGNALTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 441
           RG+ L EMG+KESLGTV+LVVRPPK+M+DDQLSDEDWD
Sbjct: 421 RGSELMEMGLKESLGTVLLVVRPPKDMDDDQLSDEDWD 447

[Close]

BLAST of IVF0007617 vs. NCBI nr
Match: TYK28779.1 (rubisco accumulation factor 1 [Cucumis melo var. makuwa])

HSP 1 Score: 851 bits (2198), Expect = 1.20e-310
Identity = 440/454 (96.92%), Postives = 440/454 (96.92%), Query Frame = 0


Query: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60
           MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ
Sbjct: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60

Query: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120
           QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120

Query: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180
           GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI
Sbjct: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180

Query: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240
           VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT
Sbjct: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240

Query: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300
           AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV
Sbjct: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300

Query: 301 VMPVCKAGEGEKGVGEAPME--------------GWSRWVVLPGWEPVAGLVKGGGVVVA 360
           VMPVCKAGEGEKGVGEAPME              GWSRWVVLPGWEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420
           FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA
Sbjct: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420

Query: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 440
           LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD
Sbjct: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 454

[Close]

BLAST of IVF0007617 vs. NCBI nr
Match: XP_008462710.1 (PREDICTED: rubisco accumulation factor 1, chloroplastic [Cucumis melo])

HSP 1 Score: 850 bits (2195), Expect = 3.45e-310
Identity = 439/454 (96.70%), Postives = 440/454 (96.92%), Query Frame = 0


Query: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60
           MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ
Sbjct: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60

Query: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120
           QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWF+YAPLISSLLQEGFTPPTLEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLEEIT 120

Query: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180
           GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI
Sbjct: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180

Query: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240
           VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT
Sbjct: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240

Query: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300
           AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV
Sbjct: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300

Query: 301 VMPVCKAGEGEKGVGEAPME--------------GWSRWVVLPGWEPVAGLVKGGGVVVA 360
           VMPVCKAGEGEKGVGEAPME              GWSRWVVLPGWEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420
           FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA
Sbjct: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420

Query: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 440
           LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD
Sbjct: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 454

[Close]

BLAST of IVF0007617 vs. NCBI nr
Match: KAA0062559.1 (rubisco accumulation factor 1 [Cucumis melo var. makuwa])

HSP 1 Score: 848 bits (2191), Expect = 1.40e-309
Identity = 439/454 (96.70%), Postives = 439/454 (96.70%), Query Frame = 0


Query: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60
           MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ
Sbjct: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60

Query: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120
           QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120

Query: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180
           GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI
Sbjct: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180

Query: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240
           VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT
Sbjct: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240

Query: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300
           AALEEALKV VTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV
Sbjct: 241 AALEEALKVGVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300

Query: 301 VMPVCKAGEGEKGVGEAPME--------------GWSRWVVLPGWEPVAGLVKGGGVVVA 360
           VMPVCKAGEGEKGVGEAPME              GWSRWVVLPGWEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420
           FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA
Sbjct: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420

Query: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 440
           LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD
Sbjct: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 454

[Close]

BLAST of IVF0007617 vs. NCBI nr
Match: XP_004142574.1 (rubisco accumulation factor 1.1, chloroplastic [Cucumis sativus] >KGN66790.1 hypothetical protein Csa_007640 [Cucumis sativus])

HSP 1 Score: 779 bits (2011), Expect = 3.22e-282
Identity = 402/454 (88.55%), Postives = 421/454 (92.73%), Query Frame = 0


Query: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60
           MLSSTITNANSL+SLSSIAHTT+IFLHQP DSPLRLFLRRR NPISAIINPS S LAAKQ
Sbjct: 1   MLSSTITNANSLSSLSSIAHTTSIFLHQPRDSPLRLFLRRRLNPISAIINPSSSSLAAKQ 60

Query: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120
           QVYQPFRPPPSPLPPQYRSLDTEGKLN+LSNRLGLWFEYAPLISSLLQEGFTPP LEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNILSNRLGLWFEYAPLISSLLQEGFTPPVLEEIT 120

Query: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180
           GISGVQQN+F+VGAQVRESL+QSNDSDPDVIASFDT GAELLYEIRLLSTEKR AAAKYI
Sbjct: 121 GISGVQQNSFIVGAQVRESLLQSNDSDPDVIASFDTGGAELLYEIRLLSTEKRAAAAKYI 180

Query: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240
           VENRLDSKGAQDLARA+KDFPRR+GD+GWE FDYD AGDCLAYMYYRLSREYN+S+ERRT
Sbjct: 181 VENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGDCLAYMYYRLSREYNSSTERRT 240

Query: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300
           AALEEALKVVVTEKAR+LIVGDLE KGDGKDGVEEE GA V+VPVVR+KIGEVAEAT VV
Sbjct: 241 AALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGAAVKVPVVRMKIGEVAEATTVV 300

Query: 301 VMPVCKAGEGEKGVGEAPME--------------GWSRWVVLPGWEPVAGLVKGGGVVVA 360
           VMPVCKAGEGEKGVGEAPME              GWSRWVVLPGWEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420
           F+DARVLPWRVNRWYKEEPILVVADRSR+EVVAGDGFYLMGG    GDGGG+LKVERGNA
Sbjct: 361 FEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYLMGG----GDGGGDLKVERGNA 420

Query: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 440
           L EMGVKESLGTV+LVVRPP+E EDDQLSDEDWD
Sbjct: 421 LMEMGVKESLGTVLLVVRPPRETEDDQLSDEDWD 450

[Close]

BLAST of IVF0007617 vs. NCBI nr
Match: XP_038880540.1 (rubisco accumulation factor 1.1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 729 bits (1883), Expect = 8.99e-263
Identity = 378/451 (83.81%), Postives = 399/451 (88.47%), Query Frame = 0


Query: 4   STITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQQVY 63
           ST T ANSLTSLS+ AHTTA FLH P DS LRLFLRRR N ISA +NPSP  LAAKQQVY
Sbjct: 3   STTTTANSLTSLSAAAHTTATFLHPPRDSSLRLFLRRRPNSISATLNPSP--LAAKQQVY 62

Query: 64  QPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEITGIS 123
           QPFRPPPSPLP QYRSLD EGKLNVLSNRLGLWFEYAPLISSL+QEGFTPPTLEEITGI+
Sbjct: 63  QPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPPTLEEITGIT 122

Query: 124 GVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYIVEN 183
           GVQQN FVVGAQVRESLVQSN++DPDVIA+FDTSGAELLYEIRLLSTEKR AAA+YIVEN
Sbjct: 123 GVQQNIFVVGAQVRESLVQSNNADPDVIAAFDTSGAELLYEIRLLSTEKRAAAARYIVEN 182

Query: 184 RLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRTAAL 243
           RLD KGAQDLARA+KDFPRR+GD+GWECFDY+  GDCLAYMYYRLSREYNN SE RTAAL
Sbjct: 183 RLDIKGAQDLARALKDFPRRRGDKGWECFDYEEPGDCLAYMYYRLSREYNNPSEPRTAAL 242

Query: 244 EEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVVVMP 303
           EEALKVVVTEKAR+LIVGDLE KGDGK+GVEEE   G+RVPVVR+KIGEVAEAT V+VMP
Sbjct: 243 EEALKVVVTEKARDLIVGDLEGKGDGKEGVEEEIEVGIRVPVVRMKIGEVAEATTVLVMP 302

Query: 304 VCKAGEGEKGVGEAPME--------------GWSRWVVLPGWEPVAGLVKGGGVVVAFKD 363
           VCKAGEGEKGVGEAPME               W +WVVLPGWEPV GLVKGGGVVVAF+D
Sbjct: 303 VCKAGEGEKGVGEAPMELRSEGEFGVVVAEKEWRKWVVLPGWEPVVGLVKGGGVVVAFED 362

Query: 364 ARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNALTE 423
           AR LPWRVNRWYKEEPILVV DRSRKEVVAGDGFYL G TVG    GGELKV+RGNAL E
Sbjct: 363 ARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTGATVG----GGELKVQRGNALME 422

Query: 424 MGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 440
           MGVKESLGTV+LVVRPPKEMEDDQLSDEDWD
Sbjct: 423 MGVKESLGTVLLVVRPPKEMEDDQLSDEDWD 447

[Close]

BLAST of IVF0007617 vs. TAIR 10
Match: AT3G04550.1 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28500.1); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 67; Metazoa - 1; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 422.2 bits (1084), Expect = 5.2e-118
Identity = 243/457 (53.17%), Postives = 309/457 (67.61%), Query Frame = 0


Query: 11  SLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPS-------PSPLAAKQQVY 70
           SL S      TT      PI  P+    R  S  ++A + P        P    A+QQ+Y
Sbjct: 6   SLISSPFTQSTTHGLFTNPITRPVNPLPRTVSFTVTASMIPKRSSANMIPKNPPARQQLY 65

Query: 71  QPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEITGIS 130
           QPFRPP SP+P Q+RSLD+ GK+ +L+ R+ LWFEYAPLISSL  +GFTPPT+EE+TGIS
Sbjct: 66  QPFRPPSSPIPTQFRSLDSAGKIEILAGRMALWFEYAPLISSLYTDGFTPPTIEELTGIS 125

Query: 131 GVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYIVEN 190
            ++QN  +VGAQVR+S++QS   +P++I++FDT GAELLYEIRLLST +RVAAA +I++ 
Sbjct: 126 SIEQNRLIVGAQVRDSILQS-IHEPELISAFDTGGAELLYEIRLLSTTQRVAAATFIIDR 185

Query: 191 RLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRTAAL 250
            +DSKGAQDLARAIKD+P R+GD GW  FDY+  GDCL+++YYR SRE  N S++RT+ L
Sbjct: 186 NIDSKGAQDLARAIKDYPNRRGDVGWLDFDYNLPGDCLSFLYYRQSRENKNPSDQRTSML 245

Query: 251 EEALKVVVTEKARNL----IVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKV 310
            +AL V  +EKA+N     + GD E + + +   +EE    +R+PVVRLK GEVAEAT V
Sbjct: 246 LQALGVAESEKAKNRLNTELYGDKEAEKEKEKKKKEEEVKAIRIPVVRLKFGEVAEATSV 305

Query: 311 VVMPVCKAGEGEKGVGEAPME--------------GWSRWVVLPGWEPVAGLVKGGGVVV 370
           VV+PVCKA EGEK + EAPME              GW RWVVLP W PVA + K GGV V
Sbjct: 306 VVLPVCKAEEGEKKILEAPMEIIAGGDFKVVEAEKGWKRWVVLPSWNPVAAIGK-GGVAV 365

Query: 371 AFKDAR-VLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERG 430
           +F+D R VLPW      KEEP+LVVADR R  V A DG+YL+    G       LK+E+G
Sbjct: 366 SFRDDRKVLPWD----GKEEPLLVVADRVRNVVEADDGYYLVVAENG-------LKLEKG 425

Query: 431 NALTEMGVKESLGTVVLVVRPPKEMEDD-QLSDEDWD 441
           + L    VKESLG VVLVVRPP+E +DD Q S ++WD
Sbjct: 426 SDLKAREVKESLGMVVLVVRPPREDDDDWQTSHQNWD 449

[Close]

BLAST of IVF0007617 vs. TAIR 10
Match: AT5G28500.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04550.1); Has 109 Blast hits to 109 proteins in 49 species: Archae - 0; Bacteria - 67; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 421.4 bits (1082), Expect = 9.0e-118
Identity = 245/456 (53.73%), Postives = 320/456 (70.18%), Query Frame = 0


Query: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60
           MLS T T  +S  S+ + + T   F  +P+      + +  +   SA+I  S      KQ
Sbjct: 1   MLSLTATTLSS--SIFTQSKTHGFFNTRPV------YRKPFTTITSALIPASNRQAPPKQ 60

Query: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120
           Q+YQPFRPPPSP+PP++RSLDT GK+ VL++RLGLWFEYAPLISSL  EGFTPP++EE+T
Sbjct: 61  QLYQPFRPPPSPIPPKFRSLDTAGKIEVLADRLGLWFEYAPLISSLYTEGFTPPSIEELT 120

Query: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180
           GISGV+QN+ +VGAQVR+SLVQS  + P++IA+FDT+GAELLYEIRLL+T +RVAAA+YI
Sbjct: 121 GISGVEQNSLIVGAQVRDSLVQSG-AKPELIAAFDTNGAELLYEIRLLNTTQRVAAAEYI 180

Query: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240
           V++  D+KGA DLARAIKDFP R+GD G   FDY+  GDCL++M YR SRE+ + SE RT
Sbjct: 181 VDHGFDTKGAGDLARAIKDFPHRRGDVGLGDFDYNLPGDCLSFMLYRKSREHRSPSEIRT 240

Query: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300
             LE+AL+  VTEKA+  ++ +L  + + ++ V+EE    +RVPVVRL+ GEVA A+ VV
Sbjct: 241 TLLEQALETAVTEKAKKAVLRELHGESE-EERVKEEEIKIIRVPVVRLRFGEVAGASSVV 300

Query: 301 VMPVCKAGEGEKGVGEAPME--------------GWSRWVVLPGWEPVAGLVKGGGVVVA 360
           V+PVCKA EGE+ + EAPME               WSRWVVLPGW+PV  + K  GV V+
Sbjct: 301 VLPVCKAEEGEEKLLEAPMEFESGGEFGVVEAEKDWSRWVVLPGWDPVVAVRK--GVAVS 360

Query: 361 FKDAR-VLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGN 420
           F D R VLPW      K E I+VV DR +K V A +G+Y +    GG      +K++RG 
Sbjct: 361 FSDDREVLPWN----GKGEAIMVVIDREKKTVEADNGYYYLVVADGG------MKLDRGL 420

Query: 421 ALTEMGVKESLGTVVLVVRPPKEMEDD-QLSDEDWD 441
            L E GV ESLG VVLVVRPP++ +D+ Q++DEDWD
Sbjct: 421 VLKEKGVNESLGMVVLVVRPPRDDDDEWQINDEDWD 434

[Close]

BLAST of IVF0007617 vs. TAIR 10
Match: AT5G28500.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04550.1). )

HSP 1 Score: 280.4 bits (716), Expect = 2.5e-75
Identity = 153/275 (55.64%), Postives = 204/275 (74.18%), Query Frame = 0


Query: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60
           MLS T T  +S  S+ + + T   F  +P+      + +  +   SA+I  S      KQ
Sbjct: 1   MLSLTATTLSS--SIFTQSKTHGFFNTRPV------YRKPFTTITSALIPASNRQAPPKQ 60

Query: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120
           Q+YQPFRPPPSP+PP++RSLDT GK+ VL++RLGLWFEYAPLISSL  EGFTPP++EE+T
Sbjct: 61  QLYQPFRPPPSPIPPKFRSLDTAGKIEVLADRLGLWFEYAPLISSLYTEGFTPPSIEELT 120

Query: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180
           GISGV+QN+ +VGAQVR+SLVQS  + P++IA+FDT+GAELLYEIRLL+T +RVAAA+YI
Sbjct: 121 GISGVEQNSLIVGAQVRDSLVQSG-AKPELIAAFDTNGAELLYEIRLLNTTQRVAAAEYI 180

Query: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240
           V++  D+KGA DLARAIKDFP R+GD G   FDY+  GDCL++M YR SRE+ + SE RT
Sbjct: 181 VDHGFDTKGAGDLARAIKDFPHRRGDVGLGDFDYNLPGDCLSFMLYRKSREHRSPSEIRT 240

Query: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEE 276
             LE+AL+  VTEKA+  ++ +L  + + + G E+
Sbjct: 241 TLLEQALETAVTEKAKKAVLRELHGESEEERGKED 266

The following BLAST results are available for this feature:

BLAST of IVF0007617 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SR19	7.4e-117	53.17	Rubisco accumulation factor 1.2, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LKR8	1.3e-116	53.73	Rubisco accumulation factor 1.1, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
Q7XDY9	6.5e-89	46.51	Rubisco accumulation factor 1, chloroplastic OS=Oryza sativa subsp. japonica OX=...	[more]
B4FR29	4.7e-87	45.91	Rubisco accumulation factor 1, chloroplastic OS=Zea mays OX=4577 GN=RAF1 PE=1 SV...	[more]
Q8YLP6	1.9e-24	28.76	RuBisCO accumulation factor 1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX ...	[more]

BLAST of IVF0007617 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DZE4	1.4e-243	96.92	Rubisco accumulation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CHL8	3.1e-243	96.70	rubisco accumulation factor 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
A0A5A7VA63	9.0e-243	96.70	Rubisco accumulation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A0A0LY43	1.1e-221	88.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690280 PE=4 SV=1	[more]
A0A6J1F451	3.7e-180	75.98	rubisco accumulation factor 1.1, chloroplastic-like OS=Cucurbita moschata OX=366...	[more]

BLAST of IVF0007617 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK28779.1	1.20e-310	96.92	rubisco accumulation factor 1 [Cucumis melo var. makuwa]	[more]
XP_008462710.1	3.45e-310	96.70	PREDICTED: rubisco accumulation factor 1, chloroplastic [Cucumis melo]	[more]
KAA0062559.1	1.40e-309	96.70	rubisco accumulation factor 1 [Cucumis melo var. makuwa]	[more]
XP_004142574.1	3.22e-282	88.55	rubisco accumulation factor 1.1, chloroplastic [Cucumis sativus] >KGN66790.1 hyp...	[more]
XP_038880540.1	8.99e-263	83.81	rubisco accumulation factor 1.1, chloroplastic-like [Benincasa hispida]	[more]

BLAST of IVF0007617 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04550.1	5.2e-118	53.17	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplas...	[more]
AT5G28500.1	9.0e-118	53.73	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G28500.2	2.5e-75	55.64	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041358	Rubisco accumulation factor 1, alpha helical domain	PFAM	PF18578	Raf1_N	coord: 154..261 e-value: 2.1E-35 score: 121.4
IPR040858	Rubisco accumulation factor 1, C-terminal	PFAM	PF18087	RuBisCo_chap_C	coord: 283..427 e-value: 1.3E-23 score: 83.2
IPR040781	Rubisco accumulation factor 1, helix turn helix domain	PFAM	PF18579	Raf1_HTH	coord: 81..141 e-value: 8.2E-23 score: 79.8
IPR037494	Rubisco accumulation factor 1	PANTHER	PTHR35299	FAMILY NOT NAMED	coord: 1..440
None	No IPR available	PANTHER	PTHR35299:SF3	RUBISCO ACCUMULATION FACTOR 1.2, CHLOROPLASTIC	coord: 1..440

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0007617.1	IVF0007617.1	mRNA