IVF0007530 (gene) Melon (IVF77) v1

Overview


Name	IVF0007530
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	HIG1 domain-containing protein
Location	chr12: 23658008 .. 23658725 (-)
RNA-Seq Expression	IVF0007530
Synteny	IVF0007530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTCCGACGAACCCAATTTGGACGAGTTCTTCGTTGAGAAGAAGCGCGCTAGGAACCCTCTTGTCCCCATCGGTAATTTCCGCCAATTTTTTCCTCCTTCCTATTGCTGTTACTTCAATTTCATTGATGTCTGTTAAATGGTTTATTGGACGTCTCCTTGTGTGTATATATTTTTTTTTGTTTTTTCTTCCCCCTTTGTGCAATTAAGTGCTCCCTCTCGATTCAGGGATGTACGGCGTCGGATTATAATCGCAAATGAATATGTTTTGGTTTCTATGTATACCCTTTTGGCGGTTAGGTTGCTACCTGAGTTAGTCTCAAATAAACGAAACGAATTCTAGAGTGATTCTATCGAGCATCTGACTTTAAGCAAATTGTAGGAAATGTCCTTTTTCTATACTACAATACAAAGGGTTTTCATTTTAGTGTTGTACATGAGTTAAAATTGCTTATGAGAGTAAGCGGTTTGTAATTCTAGGATATAAGGTTGTGTTCTTTTTTCTCCATTAGTTTTATTTGTTTGATAGAATTTGATATTCAGGTGCACTTGCCACTGCTGGGGTTCTCACTGCTGGATTAATAAGCTTTAGACGAGGCAACTCTCAATTGGGGCAGATATTAATGAGAGCTCGTGTGGTTGTCCAAGGTGCTACAGTAGCACTGATGGTTGGCACGGCTTTTTACTATGGAGAGAATCCTTGGCGGTCGAGTTAA

mRNA sequence

ATGAGCTCCGACGAACCCAATTTGGACGAGTTCTTCGTTGAGAAGAAGCGCGCTAGGAACCCTCTTGTCCCCATCGGTGCACTTGCCACTGCTGGGGTTCTCACTGCTGGATTAATAAGCTTTAGACGAGGCAACTCTCAATTGGGGCAGATATTAATGAGAGCTCGTGTGGTTGTCCAAGGTGCTACAGTAGCACTGATGGTTGGCACGGCTTTTTACTATGGAGAGAATCCTTGGCGGTCGAGTTAA

Coding sequence (CDS)

ATGAGCTCCGACGAACCCAATTTGGACGAGTTCTTCGTTGAGAAGAAGCGCGCTAGGAACCCTCTTGTCCCCATCGGTGCACTTGCCACTGCTGGGGTTCTCACTGCTGGATTAATAAGCTTTAGACGAGGCAACTCTCAATTGGGGCAGATATTAATGAGAGCTCGTGTGGTTGTCCAAGGTGCTACAGTAGCACTGATGGTTGGCACGGCTTTTTACTATGGAGAGAATCCTTGGCGGTCGAGTTAA

Protein sequence

MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENPWRSS

Homology

[Close]

BLAST of IVF0007530 vs. ExPASy Swiss-Prot
Match: Q7X843 (RING-H2 finger protein ATL48 OS=Arabidopsis thaliana OX=3702 GN=ATL48 PE=1 SV=2)

HSP 1 Score: 137.1 bits (344), Expect = 8.8e-32
Identity = 65/80 (81.25%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQ 60
          MSS EP++++ F EKKR RNPLVP+GAL TAGVLTAGLISFRRGNSQLGQ+LMRARVVVQ
Sbjct: 1  MSSVEPDMEDLFQEKKRVRNPLVPLGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQ 60

Query: 61 GATVALMVGTAFYYGENPWR 81
          GATVALMVGT +YYG+NPW+
Sbjct: 61 GATVALMVGTGYYYGDNPWK 80

[Close]

BLAST of IVF0007530 vs. ExPASy Swiss-Prot
Match: Q9BW72 (HIG1 domain family member 2A, mitochondrial OS=Homo sapiens OX=9606 GN=HIGD2A PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-10
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 10 EFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATV-ALMV 69
          E FV K R  NP+VPIG LATA  LT GL SF RGNSQ  Q++MR R+  QG TV A+++
Sbjct: 37 EKFVRKTR-ENPVVPIGCLATAAALTYGLYSFHRGNSQRSQLMMRTRIAAQGFTVAAILL 96

Query: 70 GTA 72
          G A
Sbjct: 97 GLA 98

[Close]

BLAST of IVF0007530 vs. ExPASy Swiss-Prot
Match: Q9CQJ1 (HIG1 domain family member 2A OS=Mus musculus OX=10090 GN=Higd2a PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.3e-08
Identity = 33/70 (47.14%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 3  SDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGA 62
          S+     E F+ K R  NP+VPIG L TA  LT GL  F RG S   Q++MR R+  QG 
Sbjct: 30 SNPEGFKEKFIRKTR-ENPMVPIGCLGTAAALTYGLYCFHRGQSHRSQLMMRTRIAAQGF 89

Query: 63 T-VALMVGTA 72
          T VA+++G A
Sbjct: 90 TVVAILLGLA 98

[Close]

BLAST of IVF0007530 vs. ExPASy Swiss-Prot
Match: Q4VC39 (Putative HIG1 domain family member 2B OS=Homo sapiens OX=9606 GN=HIGD2B PE=5 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-07
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 3  SDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGA 62
          S+     E F+ K R  NP+VPIG L TA VLT GL  F +GNSQ  +++M  ++  QG 
Sbjct: 30 SNPEGFKEKFLRKTR-ENPVVPIGFLCTAAVLTNGLYCFHQGNSQCSRLMMHTQIAAQGF 89

Query: 63 TV-ALMVGTA 72
          T+ A+++G A
Sbjct: 90 TIAAILLGLA 98

[Close]

BLAST of IVF0007530 vs. ExPASy Swiss-Prot
Match: Q6CBQ8 (Respiratory supercomplex factor 1, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=RCF1 PE=3 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-07
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 21 PLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQGATVALMVGTAFYYGENP 79
          PLVP+G LAT G L     + R GN +    +  ARV  QG TVA ++G A YYG++P
Sbjct: 34 PLVPLGCLATCGALILSARALRVGNKRQANRMFFARVAFQGLTVAALIGGAMYYGQDP 91

[Close]

BLAST of IVF0007530 vs. ExPASy TrEMBL
Match: A0A5A7UHA1 (RING-H2 finger protein ATL48 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003480 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.3e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQ 60
          MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQ
Sbjct: 1  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQ 60

Query: 61 GATVALMVGTAFYYGENPWRSS 83
          GATVALMVGTAFYYGENPWRSS
Sbjct: 61 GATVALMVGTAFYYGENPWRSS 82

[Close]

BLAST of IVF0007530 vs. ExPASy TrEMBL
Match: A0A1S3AVM7 (RING-H2 finger protein ATL48 OS=Cucumis melo OX=3656 GN=LOC103483333 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.3e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQ 60
          MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQ
Sbjct: 1  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQ 60

Query: 61 GATVALMVGTAFYYGENPWRSS 83
          GATVALMVGTAFYYGENPWRSS
Sbjct: 61 GATVALMVGTAFYYGENPWRSS 82

[Close]

BLAST of IVF0007530 vs. ExPASy TrEMBL
Match: A0A0A0LTF8 (HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G045920 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.1e-36
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQ 60
          MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQ+LMRARVVVQ
Sbjct: 1  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQ 60

Query: 61 GATVALMVGTAFYYGENPWRSS 83
          GATVALMVGTA+YYGENPWRSS
Sbjct: 61 GATVALMVGTAYYYGENPWRSS 82

[Close]

BLAST of IVF0007530 vs. ExPASy TrEMBL
Match: A0A6J1GSJ9 (RING-H2 finger protein ATL48-like OS=Cucurbita moschata OX=3662 GN=LOC111457053 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 7.5e-34
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1   MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQ 60
           MSS EPNLDEFFVEKKRARNPLVP+GA  TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQ
Sbjct: 54  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 113

Query: 61  GATVALMVGTAFYYGENPWRSS 83
           GATVALMVGTAFYYGENPWR S
Sbjct: 114 GATVALMVGTAFYYGENPWRPS 135

[Close]

BLAST of IVF0007530 vs. ExPASy TrEMBL
Match: A0A6J1K3J5 (RING-H2 finger protein ATL48-like OS=Cucurbita maxima OX=3661 GN=LOC111490327 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.2e-33
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQ 60
          MSS E NLDEFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQ
Sbjct: 1  MSSGESNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 60

Query: 61 GATVALMVGTAFYYGENPWRSS 83
          GATVALMVGTAFYYGENPWR S
Sbjct: 61 GATVALMVGTAFYYGENPWRPS 82

[Close]

BLAST of IVF0007530 vs. NCBI nr
Match: XP_008438139.1 (PREDICTED: RING-H2 finger protein ATL48 [Cucumis melo] >KAA0055212.1 RING-H2 finger protein ATL48 [Cucumis melo var. makuwa] >TYJ99142.1 RING-H2 finger protein ATL48 [Cucumis melo var. makuwa])

HSP 1 Score: 164 bits (416), Expect = 4.27e-51
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQ 60
          MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQ
Sbjct: 1  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQ 60

Query: 61 GATVALMVGTAFYYGENPWRSS 82
          GATVALMVGTAFYYGENPWRSS
Sbjct: 61 GATVALMVGTAFYYGENPWRSS 82

[Close]

BLAST of IVF0007530 vs. NCBI nr
Match: XP_004152465.1 (RING-H2 finger protein ATL48 [Cucumis sativus] >KGN64294.1 hypothetical protein Csa_013421 [Cucumis sativus])

HSP 1 Score: 162 bits (410), Expect = 3.52e-50
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQ 60
          MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQ+LMRARVVVQ
Sbjct: 1  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQ 60

Query: 61 GATVALMVGTAFYYGENPWRSS 82
          GATVALMVGTA+YYGENPWRSS
Sbjct: 61 GATVALMVGTAYYYGENPWRSS 82

[Close]

BLAST of IVF0007530 vs. NCBI nr
Match: XP_038895243.1 (RING-H2 finger protein ATL48-like [Benincasa hispida])

HSP 1 Score: 158 bits (400), Expect = 1.18e-48
Identity = 77/82 (93.90%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQ 60
          MSS+EPNLDEFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQ
Sbjct: 1  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 60

Query: 61 GATVALMVGTAFYYGENPWRSS 82
          GATVALMVGTAFYYGENPWRSS
Sbjct: 61 GATVALMVGTAFYYGENPWRSS 82

[Close]

BLAST of IVF0007530 vs. NCBI nr
Match: XP_023541211.1 (RING-H2 finger protein ATL48-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 154 bits (388), Expect = 8.01e-47
Identity = 75/82 (91.46%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQ 60
          MSS EPNLDEFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQ
Sbjct: 1  MSSGEPNLDEFFVEKKRARNPLVPLGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 60

Query: 61 GATVALMVGTAFYYGENPWRSS 82
          GATVALMVGTAFYYG+NPWR S
Sbjct: 61 GATVALMVGTAFYYGDNPWRPS 82

[Close]

BLAST of IVF0007530 vs. NCBI nr
Match: KAG6573043.1 (RING-H2 finger protein ATL48, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154 bits (388), Expect = 8.01e-47
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQ 60
          MSS EPNLDEFFVEKKRARNPLVP+GA  TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQ
Sbjct: 1  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 60

Query: 61 GATVALMVGTAFYYGENPWRSS 82
          GATVALMVGTAFYYGENPWR S
Sbjct: 61 GATVALMVGTAFYYGENPWRPS 82

[Close]

BLAST of IVF0007530 vs. TAIR 10
Match: AT3G48030.1 (hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 137.1 bits (344), Expect = 6.3e-33
Identity = 65/80 (81.25%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQ 60
          MSS EP++++ F EKKR RNPLVP+GAL TAGVLTAGLISFRRGNSQLGQ+LMRARVVVQ
Sbjct: 1  MSSVEPDMEDLFQEKKRVRNPLVPLGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQ 60

Query: 61 GATVALMVGTAFYYGENPWR 81
          GATVALMVGT +YYG+NPW+
Sbjct: 61 GATVALMVGTGYYYGDNPWK 80

The following BLAST results are available for this feature:

BLAST of IVF0007530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7X843	8.8e-32	81.25	RING-H2 finger protein ATL48 OS=Arabidopsis thaliana OX=3702 GN=ATL48 PE=1 SV=2	[more]
Q9BW72	1.9e-10	58.73	HIG1 domain family member 2A, mitochondrial OS=Homo sapiens OX=9606 GN=HIGD2A PE...	[more]
Q9CQJ1	2.3e-08	47.14	HIG1 domain family member 2A OS=Mus musculus OX=10090 GN=Higd2a PE=3 SV=1	[more]
Q4VC39	1.5e-07	44.29	Putative HIG1 domain family member 2B OS=Homo sapiens OX=9606 GN=HIGD2B PE=5 SV=...	[more]
Q6CBQ8	3.4e-07	46.55	Respiratory supercomplex factor 1, mitochondrial OS=Yarrowia lipolytica (strain ...	[more]

BLAST of IVF0007530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UHA1	4.3e-37	100.00	RING-H2 finger protein ATL48 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3AVM7	4.3e-37	100.00	RING-H2 finger protein ATL48 OS=Cucumis melo OX=3656 GN=LOC103483333 PE=4 SV=1	[more]
A0A0A0LTF8	2.1e-36	97.56	HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G045920 PE=4 S...	[more]
A0A6J1GSJ9	7.5e-34	91.46	RING-H2 finger protein ATL48-like OS=Cucurbita moschata OX=3662 GN=LOC111457053 ...	[more]
A0A6J1K3J5	2.2e-33	91.46	RING-H2 finger protein ATL48-like OS=Cucurbita maxima OX=3661 GN=LOC111490327 PE...	[more]

BLAST of IVF0007530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008438139.1	4.27e-51	100.00	PREDICTED: RING-H2 finger protein ATL48 [Cucumis melo] >KAA0055212.1 RING-H2 fin...	[more]
XP_004152465.1	3.52e-50	97.56	RING-H2 finger protein ATL48 [Cucumis sativus] >KGN64294.1 hypothetical protein ...	[more]
XP_038895243.1	1.18e-48	93.90	RING-H2 finger protein ATL48-like [Benincasa hispida]	[more]
XP_023541211.1	8.01e-47	91.46	RING-H2 finger protein ATL48-like [Cucurbita pepo subsp. pepo]	[more]
KAG6573043.1	8.01e-47	91.46	RING-H2 finger protein ATL48, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of IVF0007530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48030.1	6.3e-33	81.25	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family ...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.140.1320		coord: 20..77 e-value: 3.2E-17 score: 64.0
None	No IPR available	PANTHER	PTHR12297	HYPOXIA-INDUCBILE GENE 1 HIG1 -RELATED	coord: 3..78
None	No IPR available	PANTHER	PTHR12297:SF3	HIG1 DOMAIN FAMILY MEMBER 2A	coord: 3..78
IPR007667	Hypoxia induced protein, domain	PFAM	PF04588	HIG_1_N	coord: 20..69 e-value: 1.0E-18 score: 67.3
IPR007667	Hypoxia induced protein, domain	PROSITE	PS51503	HIG1	coord: 1..82 score: 22.010584

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0007530.1	IVF0007530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane