IVF0007470 (gene) Melon (IVF77) v1

Overview


Name	IVF0007470
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr12: 18771371 .. 18771796 (+)
RNA-Seq Expression	IVF0007470
Synteny	IVF0007470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGACGATGTATGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGAGCTTGAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCGGAGTGGCCAGCACGCAACCTTGCAAATGACAACCACATGCGCACGGAATTTTTCCGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCGGGGTTTCGTACTCATGCCTGAGGATGAAAGGGAGGGCTTCTGTAGAGTCCTCCTACGAGACATAGAGAGATAG

mRNA sequence

ATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGACGATGTATGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGAGCTTGAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCGGAGTGGCCAGCACGCAACCTTGCAAATGACAACCACATGCGCACGGAATTTTTCCGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCGGGGTTTCGTACTCATGCCTGAGGATGAAAGGGAGGGCTTCTGTAGAGTCCTCCTACGAGACATAGAGAGATAG

Coding sequence (CDS)

ATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGACGATGTATGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGAGCTTGAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCGGAGTGGCCAGCACGCAACCTTGCAAATGACAACCACATGCGCACGGAATTTTTCCGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCGGGGTTTCGTACTCATGCCTGAGGATGAAAGGGAGGGCTTCTGTAGAGTCCTCCTACGAGACATAGAGAGATAG

Protein sequence

MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

Homology

[Close]

BLAST of IVF0007470 vs. ExPASy TrEMBL
Match: A0A5A7T091 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9475G00160 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.1e-72
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 60
           MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL
Sbjct: 217 MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 276

Query: 61  DQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120
           DQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 277 DQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 336

Query: 121 VLMPEDEREGFCRVLLRDIER 142
           VLMPEDEREGFCRVLLRDIER
Sbjct: 337 VLMPEDEREGFCRVLLRDIER 357

[Close]

BLAST of IVF0007470 vs. ExPASy TrEMBL
Match: A0A5D3DCZ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00020 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 2.9e-70
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 60
           MGDGNEDFPPVYSQGVDISQDDV ASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL
Sbjct: 166 MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 225

Query: 61  DQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120
           DQTNEQLRQIAEWPARNLANDNH+RTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 226 DQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 285

Query: 121 VLMPEDEREGFCRVLLRDIER 142
           VLMPEDEREGFCRVLLRDIER
Sbjct: 286 VLMPEDEREGFCRVLLRDIER 306

[Close]

BLAST of IVF0007470 vs. ExPASy TrEMBL
Match: A0A5D3CHA0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00970 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 2.9e-70
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 60
           MGDGNEDFPPVYSQGVDISQDDV ASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL
Sbjct: 116 MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 175

Query: 61  DQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120
           DQTNEQLRQIAEWPARNLANDNH+RTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 176 DQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 235

Query: 121 VLMPEDEREGFCRVLLRDIER 142
           VLMPEDEREGFCRVLLRDIER
Sbjct: 236 VLMPEDEREGFCRVLLRDIER 256

[Close]

BLAST of IVF0007470 vs. ExPASy TrEMBL
Match: A0A5A7SRU1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold708G00100 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 2.9e-70
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 60
           MGDGNEDFPPVYSQGVDISQDDV ASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL
Sbjct: 166 MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 225

Query: 61  DQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120
           DQTNEQLRQIAEWPARNLANDNH+RTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 226 DQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 285

Query: 121 VLMPEDEREGFCRVLLRDIER 142
           VLMPEDEREGFCRVLLRDIER
Sbjct: 286 VLMPEDEREGFCRVLLRDIER 306

[Close]

BLAST of IVF0007470 vs. ExPASy TrEMBL
Match: A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.6e-70
Identity = 138/141 (97.87%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 60
           MGDGNEDFPPVYSQGVDISQDDV ASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL
Sbjct: 166 MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 225

Query: 61  DQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120
           DQTNEQLR+IAEWPARNLANDNH+RTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 226 DQTNEQLREIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 285

Query: 121 VLMPEDEREGFCRVLLRDIER 142
           VLMPEDEREGFCRVLLRDIER
Sbjct: 286 VLMPEDEREGFCRVLLRDIER 306

[Close]

BLAST of IVF0007470 vs. NCBI nr
Match: KAA0036924.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 283 bits (723), Expect = 6.39e-93
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 60
           MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL
Sbjct: 217 MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 276

Query: 61  DQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120
           DQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 277 DQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 336

Query: 121 VLMPEDEREGFCRVLLRDIER 141
           VLMPEDEREGFCRVLLRDIER
Sbjct: 337 VLMPEDEREGFCRVLLRDIER 357

[Close]

BLAST of IVF0007470 vs. NCBI nr
Match: KAA0065692.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 275 bits (704), Expect = 4.27e-92
Identity = 138/141 (97.87%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 60
           MGDGNEDFPPVYSQGVDISQDDV ASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL
Sbjct: 72  MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 131

Query: 61  DQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120
           DQTNEQLR+IAEWPARNLANDNH+RTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 132 DQTNEQLREIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 191

Query: 121 VLMPEDEREGFCRVLLRDIER 141
           VLMPEDEREGFCRVLLRDIER
Sbjct: 192 VLMPEDEREGFCRVLLRDIER 212

[Close]

BLAST of IVF0007470 vs. NCBI nr
Match: TYK10915.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15088.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 276 bits (707), Expect = 6.56e-92
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 60
           MGDGNEDFPPVYSQGVDISQDDV ASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL
Sbjct: 116 MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 175

Query: 61  DQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120
           DQTNEQLRQIAEWPARNLANDNH+RTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 176 DQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 235

Query: 121 VLMPEDEREGFCRVLLRDIER 141
           VLMPEDEREGFCRVLLRDIER
Sbjct: 236 VLMPEDEREGFCRVLLRDIER 256

[Close]

BLAST of IVF0007470 vs. NCBI nr
Match: KAA0053857.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 272 bits (695), Expect = 8.93e-92
Identity = 135/141 (95.74%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 60
           MGDGNEDFPPVYSQGVDISQDDV ASRPSRAS+GRTGSSGSKRKRGSQRDFELEAIH+AL
Sbjct: 1   MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL 60

Query: 61  DQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120
           DQTNEQLR+IA+WPARNLANDNH+RTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 61  DQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120

Query: 121 VLMPEDEREGFCRVLLRDIER 141
           VLMPEDEREGFCRVLLRDIER
Sbjct: 121 VLMPEDEREGFCRVLLRDIER 141

[Close]

BLAST of IVF0007470 vs. NCBI nr
Match: TYK21395.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24245.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 276 bits (707), Expect = 3.38e-91
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 60
           MGDGNEDFPPVYSQGVDISQDDV ASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL
Sbjct: 166 MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 225

Query: 61  DQTNEQLRQIAEWPARNLANDNHMRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120
           DQTNEQLRQIAEWPARNLANDNH+RTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 226 DQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 285

Query: 121 VLMPEDEREGFCRVLLRDIER 141
           VLMPEDEREGFCRVLLRDIER
Sbjct: 286 VLMPEDEREGFCRVLLRDIER 306

The following BLAST results are available for this feature:

BLAST of IVF0007470 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0007470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T091	4.1e-72	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DCZ1	2.9e-70	98.58	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CHA0	2.9e-70	98.58	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SRU1	2.9e-70	98.58	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TRV1	6.6e-70	97.87	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0007470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036924.1	6.39e-93	100.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065692.1	4.27e-92	97.87	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK10915.1	6.56e-92	98.58	retrotransposon protein [Cucumis melo var. makuwa] >TYK15088.1 retrotransposon p...	[more]
KAA0053857.1	8.93e-92	95.74	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK21395.1	3.38e-91	98.58	retrotransposon protein [Cucumis melo var. makuwa] >TYK24245.1 retrotransposon p...	[more]

BLAST of IVF0007470 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0007470.1	IVF0007470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane