IVF0007411 (gene) Melon (IVF77) v1

Overview


Name	IVF0007411
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	chloroplast stem-loop binding protein of 41 kDa b, chloroplastic
Location	chr08: 20878060 .. 20881785 (-)
RNA-Seq Expression	IVF0007411
Synteny	IVF0007411

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTATCTCAGGTTTGTGGTGCTGATGACTTGAGTGGGTACTTACTCGAGAAGGCAATTGGTGAACAAGAAGTCGAAGTGGCTCTTTCGATTTCGATTTCCTTTTTCGTTTTTGGGTTTTAGATTCGATAAATTTTAAATGAGAGGTGGAGGCAAATCACTGTCTTATCCTCAAAACATTAGAATGAAATTCAGCCAGAGAATGAGAAGCCATGTCCTTAGAAGAACAACCCTTCAAATCTATTCCCTTTTTAATCCCACCACCAAACAGGAAGACGAAGGGCTTCTAAATGGGAATCATGGCAAACCCAATGGCTGCTCACCACCAAAAATTTACTTCATTCTCTGTTCTTCCTTCTTCTCTTTCCGATTTCAATGGCGCCAGACTCCACGCCCAAGTTCAGGTCTATTTCTCTATTATTTTTTCCTATTTATCTTTCTGTTTTGGGTTTTGCGTTTATCTCTTAAATTTTGATTCAGTCTGGATATTATTTGAGGGGTTCTTGTTGTTAAAGCCTAAAAATCAGTGGACATTGAACTGGGTTTCCCCTTAAATGGCCATATTGCTATATGCGAGTTTCTTTTCCCTCTGTTTGGATTGATTCATATATGTTGTTTGCCACTAAACACAAAAGCTTAGAAGAAATAGGATACATCGACTATTAATTGGACTCAAAAAACTCATTCAACATGAAAGCTGTTAACGTGAATTTGAGGGTGAATGTGGTTTCGGAACATTCTGCGTTGATACCATGTTAATCACGAAAGCTTTGAAATATAATTTTAATTCATGAAGCCTGATTAGCATGTGAGCTGCTAAAATGAATAAGTGGGGTAATGAGGTTTCAAATATGAGTTTTTTTTTTTAACCTGATACTGTGTTAAATTACATTACGTTAGGAAGTGTAGGCTGATTGATTATGATGCATTTAGTTCTTCATATGTTTTCTCAATTTGGTTTGGCCTTGGATTGCAGTATAAAAGAAAGGTTATGCAGCCAAAAGGAGGATTACATGTTACAGCAAGTGCCAAAAAGAACATTCTTATAATGGGTGGCACTAGATTTATTGGTATATTCTTATCTAGACTTCTAGTCAAAGAGGGTCATCAGGTTTTGCCATTCTCTTTCTTCTTTTTTTGGTTGCTGCAGATTCCCCATTAGAAGATTCATGGAATTTGCTAATTTTGGCAGGTGACTTTGTTTACAAGAGGAAAAGCACCTGTTACACAACAATTGCCGGGCGAGTCGGAAGCAGATTATGCCGATTTTAAATCCAAGGTCTTCTAAGCTTCCATTTAAGCCTTAAAACTCTGGTGGCTTTCATAAAAAGGAAATGTGGTACCATGGTTTTATTTTAAGCATATTACTTGTGGATTTGTGGGAGTACAGATGATAAATTTGTCTTTTGATTCCCATTTCTCAGATTCTGCATTTGAAGGGAGACAGAAAAGACTTTGATTTTGTGAAATCCAGTCTCTCGGCCGCGGGGTTTGATGTTGTTTACGACATTAATGGTGAGTCTGATTTTGGATTCATCACTTCTGGTTTTAAAATTTTCACCCTGATTTGTTTTAAAACCGCCATATCTAATTGTTTTTTCGGTCTACACACTGCTGCATGATTTCAGGGCGAGAAGCAGTTGAAGTTGAACCAATTTTAGATGCTTTGCCTAAGCTAGAGCAGTATGATTTCCTAAATAATATCTGCTTTCTTTTCACAGCAATTGTTGTTAGTCATGTGCATCATGTTTTTCAATGCTAGAGGGAACAATTTTGATTTACAAAATGATTTTGTGCCATTGGTGTTACGGGATTGGTTTGTTGAGTTTCTGTGGGTGAAAGTATTCCGATTGTTGGACTTGAATTCGGAAATGTTGCCAACATTGTTAATTTTATAAAGATATAGAAGATATAGTATTCAGCTGTCAAGGTAAATTTAGGTGTTTCAAGGAATCAAAGGTCATATATTCAAATCATAGTGATGATCCAGTGGAAATATTAAATGTTCTACAAGTTTTCCAAACTGAAATGTTACATTATAAGATAATTGTCCTGTGAAATCAGTAAAGTACGGAAGCTAGTCCAAATATTACGATTCACAAAAATTGGCATAAAGAACCATGAAACAGACGGAGTTCGATAAAATGTGATGTATCTAATTATTCTCAGGTTTATTTACTGCTCTTCAGCTGGTGTATACCTCAAGTCTGATCTCCTACCTCATTTTGAGGTACCTTCTCTTTTCCTTGTAAACAAAAGCTTTCAGATTACTTTCTTTGTCCAATACCAAAATAATTGGTTCACTCAAAGTTTGACCTCCACTTCTCTTTCATTTCGTAGGTAGATGCAGTTGATCCAAAGAGTAGACATAAGGGAAAGCTTGAGACAGAGAGCTTACTGGCGTCGAAGGATGTTAATTGGACTTCTATAAGACCAGTCTACATCTATGGACCATTGAACTACAATCCTGTGGAAGAATGGTTCTTCCACCGGTTGAAAGCCGGTCGCCCCATTCCAATTCCCAACTCAGGCATTCAAATTACTCAACTTGGTCACGTCAAGGTCTGTGCTGTTCAGTGCTTTCAATGCAATAGGAACAAATCGTTAAGTCTGTTGTAGGTAGAGGGCCAATAGAGATCCTTTGATGTGAATAGCCTGGAAAAAGTATTATAGTTTAAAACATTTCTTGATGTTAATGTAGCAATTGAGATCGAGTTAATAATTGAACTTTTTTTGTCAACTGCAGGATTTGGCAACTGCTTTTGTTCAGGTTCTTGGTAACGACAAGGCAAGCCAGCAAGTATTCAATATCTCTGGTGAAAAATATGTTACATTTGATGGGTTAGCCAAAGCTTGTGCTAAGGTAATCTCTTGAAGAAATAATCAGGACACCGTAGTATTCATCATTGAGATAACATCTGAATTGGCTTCTTTCTCCTGTTGAGATAACATCTGAATTGGCTTCTTTCTCCTGTTAAACTTCACAGGCTGGAGGCTTTCCTGAGCCCGAGATTGTTCACTACAATCCGAAGGAGTTTGACTTTGGAAAGAAGAAGCCATTCCCTTTCCGTGATCAGGTAATCTGGTCGATGTAATGATAAATATGATGCAGTTTACTGGAATCTGATAGAAAAAATTGTCCCATTGTTAATATAAATGTCATGCAGCATTTCTTTGCATCGGTTGAGAAAGCGAAGAGCGTGCTCGGGTGGAAGCCCGAATTTGATTTGGTGGAAGGTCTTGCAGACTCCTACAATTTGGACTTTGGCAGAGGCACTTTCAGAAAAGAGGCTGATTTTTCGACAGATGACATAATCCTTGGCAAGAGCCTGGTTCTTCAAGCTTGAGGCATCCCTTTTCATTTTTTCGTGGCAGTTTTAACTTATTTTCTACCAAGCTGCAGGGGTCAGTCGACCGATCTTGGGTTGAGAAGTCAATTTAGGAATGTTATTTATGTATATGTATGGGATGGAGATTTTTAGAGAAGCATTAGAACTAGGCCTTGTCAATTCATTAGAGACCTTCACTCAAGCATAGATAAAGTCAGATGCTTATGTATCATATGAAAAATGCAGTATAAATGATGTCATTTGTTTCTTGTTTATTTGCACTTATTTTTGTAGCTTTCTAATCATATCACACTCAATTTTGGATAATGTTCAGCATGGTTGATGTAAAAGTTGCATGGGTAGAGATTTAACATTTCTTTTTCAAAAGTTATCCAAAC

mRNA sequence

AATTATCTCAGGTTTGTGGTGCTGATGACTTGAGTGGGTACTTACTCGAGAAGGCAATTGGTGAACAAGAAGTCGAAGTGGCTCTTTCGATTTCGATTTCCTTTTTCGTTTTTGGGTTTTAGATTCGATAAATTTTAAATGAGAGGTGGAGGCAAATCACTGTCTTATCCTCAAAACATTAGAATGAAATTCAGCCAGAGAATGAGAAGCCATGTCCTTAGAAGAACAACCCTTCAAATCTATTCCCTTTTTAATCCCACCACCAAACAGGAAGACGAAGGGCTTCTAAATGGGAATCATGGCAAACCCAATGGCTGCTCACCACCAAAAATTTACTTCATTCTCTGTTCTTCCTTCTTCTCTTTCCGATTTCAATGGCGCCAGACTCCACGCCCAAGTTCAGTATAAAAGAAAGGTTATGCAGCCAAAAGGAGGATTACATGTTACAGCAAGTGCCAAAAAGAACATTCTTATAATGGGTGGCACTAGATTTATTGGTATATTCTTATCTAGACTTCTAGTCAAAGAGGGTCATCAGGTGACTTTGTTTACAAGAGGAAAAGCACCTGTTACACAACAATTGCCGGGCGAGTCGGAAGCAGATTATGCCGATTTTAAATCCAAGATTCTGCATTTGAAGGGAGACAGAAAAGACTTTGATTTTGTGAAATCCAGTCTCTCGGCCGCGGGGTTTGATGTTGTTTACGACATTAATGGGCGAGAAGCAGTTGAAGTTGAACCAATTTTAGATGCTTTGCCTAAGCTAGAGCAGTTTATTTACTGCTCTTCAGCTGGTGTATACCTCAAGTCTGATCTCCTACCTCATTTTGAGGTAGATGCAGTTGATCCAAAGAGTAGACATAAGGGAAAGCTTGAGACAGAGAGCTTACTGGCGTCGAAGGATGTTAATTGGACTTCTATAAGACCAGTCTACATCTATGGACCATTGAACTACAATCCTGTGGAAGAATGGTTCTTCCACCGGTTGAAAGCCGGTCGCCCCATTCCAATTCCCAACTCAGGCATTCAAATTACTCAACTTGGTCACGTCAAGGATTTGGCAACTGCTTTTGTTCAGGTTCTTGGTAACGACAAGGCAAGCCAGCAAGTATTCAATATCTCTGGTGAAAAATATGTTACATTTGATGGGTTAGCCAAAGCTTGTGCTAAGGCTGGAGGCTTTCCTGAGCCCGAGATTGTTCACTACAATCCGAAGGAGTTTGACTTTGGAAAGAAGAAGCCATTCCCTTTCCGTGATCAGCATTTCTTTGCATCGGTTGAGAAAGCGAAGAGCGTGCTCGGGTGGAAGCCCGAATTTGATTTGGTGGAAGGTCTTGCAGACTCCTACAATTTGGACTTTGGCAGAGGCACTTTCAGAAAAGAGGCTGATTTTTCGACAGATGACATAATCCTTGGCAAGAGCCTGGTTCTTCAAGCTTGAGGCATCCCTTTTCATTTTTTCGTGGCAGTTTTAACTTATTTTCTACCAAGCTGCAGGGGTCAGTCGACCGATCTTGGGTTGAGAAGTCAATTTAGGAATGTTATTTATGTATATGTATGGGATGGAGATTTTTAGAGAAGCATTAGAACTAGGCCTTGTCAATTCATTAGAGACCTTCACTCAAGCATAGATAAAGTCAGATGCTTATGTATCATATGAAAAATGCAGTATAAATGATGTCATTTGTTTCTTGTTTATTTGCACTTATTTTTGTAGCTTTCTAATCATATCACACTCAATTTTGGATAATGTTCAGCATGGTTGATGTAAAAGTTGCATGGGTAGAGATTTAACATTTCTTTTTCAAAAGTTATCCAAAC

Coding sequence (CDS)

ATGGGAATCATGGCAAACCCAATGGCTGCTCACCACCAAAAATTTACTTCATTCTCTGTTCTTCCTTCTTCTCTTTCCGATTTCAATGGCGCCAGACTCCACGCCCAAGTTCAGTATAAAAGAAAGGTTATGCAGCCAAAAGGAGGATTACATGTTACAGCAAGTGCCAAAAAGAACATTCTTATAATGGGTGGCACTAGATTTATTGGTATATTCTTATCTAGACTTCTAGTCAAAGAGGGTCATCAGGTGACTTTGTTTACAAGAGGAAAAGCACCTGTTACACAACAATTGCCGGGCGAGTCGGAAGCAGATTATGCCGATTTTAAATCCAAGATTCTGCATTTGAAGGGAGACAGAAAAGACTTTGATTTTGTGAAATCCAGTCTCTCGGCCGCGGGGTTTGATGTTGTTTACGACATTAATGGGCGAGAAGCAGTTGAAGTTGAACCAATTTTAGATGCTTTGCCTAAGCTAGAGCAGTTTATTTACTGCTCTTCAGCTGGTGTATACCTCAAGTCTGATCTCCTACCTCATTTTGAGGTAGATGCAGTTGATCCAAAGAGTAGACATAAGGGAAAGCTTGAGACAGAGAGCTTACTGGCGTCGAAGGATGTTAATTGGACTTCTATAAGACCAGTCTACATCTATGGACCATTGAACTACAATCCTGTGGAAGAATGGTTCTTCCACCGGTTGAAAGCCGGTCGCCCCATTCCAATTCCCAACTCAGGCATTCAAATTACTCAACTTGGTCACGTCAAGGATTTGGCAACTGCTTTTGTTCAGGTTCTTGGTAACGACAAGGCAAGCCAGCAAGTATTCAATATCTCTGGTGAAAAATATGTTACATTTGATGGGTTAGCCAAAGCTTGTGCTAAGGCTGGAGGCTTTCCTGAGCCCGAGATTGTTCACTACAATCCGAAGGAGTTTGACTTTGGAAAGAAGAAGCCATTCCCTTTCCGTGATCAGCATTTCTTTGCATCGGTTGAGAAAGCGAAGAGCGTGCTCGGGTGGAAGCCCGAATTTGATTTGGTGGAAGGTCTTGCAGACTCCTACAATTTGGACTTTGGCAGAGGCACTTTCAGAAAAGAGGCTGATTTTTCGACAGATGACATAATCCTTGGCAAGAGCCTGGTTCTTCAAGCTTGA

Protein sequence

MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA

Homology

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BLAST of IVF0007411 vs. ExPASy Swiss-Prot
Match: Q9SA52 (Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CSP41B PE=1 SV=1)

HSP 1 Score: 672.9 bits (1735), Expect = 2.1e-192
Identity = 323/375 (86.13%), Postives = 349/375 (93.07%), Query Frame = 0


Query: 8   MAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNILIMGGTR 67
           M   HQ   SFS+L SSLSDFNGA+LH QVQYKRKV QPKG L+V+AS++K ILIMGGTR
Sbjct: 6   MLQQHQ--PSFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIMGGTR 65

Query: 68  FIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDRKDFDFVK 127
           FIG+FLSR+LVKEGHQVTLFTRGK+P+ +QLPGES+ D+ADF SKILHLKGDRKD+DFVK
Sbjct: 66  FIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYDFVK 125

Query: 128 SSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFEVDAVDP 187
           SSLSA GFDVVYDINGREA EVEPIL+ALPKLEQ+IYCSSAGVYLKSD+LPH E DAVDP
Sbjct: 126 SSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEEDAVDP 185

Query: 188 KSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGIQ 247
           KSRHKGKLETESLL SK VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+PNSGIQ
Sbjct: 186 KSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNSGIQ 245

Query: 248 ITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYN 307
           I+QLGHVKDLATAF+ VLGN+KAS+++FNISGEKYVTFDGLAKACAKAGGFPEPEIVHYN
Sbjct: 246 ISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYN 305

Query: 308 PKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRGTFRKEAD 367
           PKEFDFGKKK FPFRDQHFFASVEKAK VLGWKPEFDLVEGL DSYNLDFGRGTFRKEAD
Sbjct: 306 PKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEAD 365

Query: 368 FSTDDIILGKSLVLQ 383
           F+TDD+IL K LVLQ
Sbjct: 366 FTTDDMILSKKLVLQ 378

[Close]

BLAST of IVF0007411 vs. ExPASy Swiss-Prot
Match: Q9LYA9 (Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CSP41A PE=1 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.0e-50
Identity = 129/370 (34.86%), Postives = 194/370 (52.43%), Query Frame = 0


Query: 16  TSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTA-SAKKNILIM----GGTRFIG 75
           +SFS L SS S  + + L   ++  R++   K  +  ++   KKN+LI+    GG   IG
Sbjct: 38  SSFSSLSSS-SSSSSSLLTFSLRTSRRLSPQKFTVKASSVGEKKNVLIVNTNSGGHAVIG 97

Query: 76  IFLSRLLVKEGHQVTLFTRG--KAPVTQQLPGESEADYADFKSKILHLKGDRKDFDFVKS 135
            + ++ L+  GH VT+ T G   +   ++ P    ++      K +   G+  +   V +
Sbjct: 98  FYFAKELLSAGHAVTILTVGDESSEKMKKPPFNRFSEIVSGGGKTVW--GNPAN---VAN 157

Query: 136 SLSAAGFDVVYDINGREAVEVEPILDALPK--LEQFIYCSSAGVYLKSDLLPHFEVDAVD 195
            +    FDVV D NG++   V P++D      ++QF++ SSAG+Y  ++  PH E DAV 
Sbjct: 158 VVGGETFDVVLDNNGKDLDTVRPVVDWAKSSGVKQFLFISSAGIYKSTEQPPHVEGDAVK 217

Query: 196 PKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGI 255
             + H   +  E  LA    NW S RP Y+ G  N    EEWFF R+   R +PIP SG+
Sbjct: 218 ADAGH---VVVEKYLAETFGNWASFRPQYMIGSGNNKDCEEWFFDRIVRDRAVPIPGSGL 277

Query: 256 QITQLGHVKDLATAFVQVLGN-DKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVH 315
           Q+T + HV+DL++     + N + AS  +FN   ++ VT DG+AK CA A G    EIVH
Sbjct: 278 QLTNISHVRDLSSMLTSAVANPEAASGNIFNCVSDRAVTLDGMAKLCAAAAG-KTVEIVH 337

Query: 316 YNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRGTFRKE 375
           Y+PK      KK F FR+ HF+A    AK +LGW+ + +L E L + +      G  +KE
Sbjct: 338 YDPKAIGVDAKKAFLFRNMHFYAEPRAAKDLLGWESKTNLPEDLKERFEEYVKIGRDKKE 397

[Close]

BLAST of IVF0007411 vs. ExPASy Swiss-Prot
Match: O06485 (Putative sugar dehydratase/epimerase YfnG OS=Bacillus subtilis (strain 168) OX=224308 GN=yfnG PE=3 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 9.0e-10
Identity = 67/322 (20.81%), Postives = 126/322 (39.13%), Query Frame = 0


Query: 58  KNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLK 117
           KN+ + G T  +G +L + L+++G  VT   R   P +    GE          K+  ++
Sbjct: 7   KNVFVTGCTGLLGSYLVKELIEQGANVTGLVRDHVPQSNLYQGE-------HIKKMNIVR 66

Query: 118 GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVE----------------PILDAL---PK 177
           G  +D   ++ +L     D V+ +  +  V V                  IL+A    P 
Sbjct: 67  GSLEDLAVIERALGEYEIDTVFHLAAQAIVGVANRNPISTFEANILGTWNILEACRKHPL 126

Query: 178 LEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLA-------SKDVNWTSI 237
           +++ I  SS   Y   + LP+ E   +  K  +        L++          V  T  
Sbjct: 127 IKRVIVASSDKAYGDQENLPYDENMPLQGKHPYDVSKSCADLISHTYFHTYGLPVCITRC 186

Query: 238 RPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLATAFV---QVLGND 297
             +Y  G LN+N +       +  G    I + G  +    +++D   A++   + +  +
Sbjct: 187 GNLYGGGDLNFNRIIPQTIQLVLNGEAPEIRSDGTFVRDYFYIEDAVQAYLLLAEKMEEN 246

Query: 298 KASQQVFNISGEKYVT-FDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFF 350
             + + FN S E  +T  + + K   K     +P++++    E             +H +
Sbjct: 247 NLAGEAFNFSNEIQLTVLELVEKILKKMNSNLKPKVLNQGSNEI------------KHQY 306

[Close]

BLAST of IVF0007411 vs. ExPASy TrEMBL
Match: A0A5D3C0Z4 (Chloroplast stem-loop binding protein of 41 kDa b OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G001730 PE=3 SV=1)

HSP 1 Score: 782.7 bits (2020), Expect = 6.9e-223
Identity = 383/383 (100.00%), Postives = 383/383 (100.00%), Query Frame = 0


Query: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI 60
           MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI
Sbjct: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI 60

Query: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120
           LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR
Sbjct: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120

Query: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180
           KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF
Sbjct: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180

Query: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240
           EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP
Sbjct: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240

Query: 241 IPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300
           IPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPE
Sbjct: 241 IPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300

Query: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRG 360
           PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRG
Sbjct: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRG 360

Query: 361 TFRKEADFSTDDIILGKSLVLQA 384
           TFRKEADFSTDDIILGKSLVLQA
Sbjct: 361 TFRKEADFSTDDIILGKSLVLQA 383

[Close]

BLAST of IVF0007411 vs. ExPASy TrEMBL
Match: A0A1S3B4I6 (chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486073 PE=3 SV=1)

HSP 1 Score: 782.7 bits (2020), Expect = 6.9e-223
Identity = 383/383 (100.00%), Postives = 383/383 (100.00%), Query Frame = 0


Query: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI 60
           MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI
Sbjct: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI 60

Query: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120
           LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR
Sbjct: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120

Query: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180
           KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF
Sbjct: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180

Query: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240
           EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP
Sbjct: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240

Query: 241 IPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300
           IPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPE
Sbjct: 241 IPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300

Query: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRG 360
           PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRG
Sbjct: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRG 360

Query: 361 TFRKEADFSTDDIILGKSLVLQA 384
           TFRKEADFSTDDIILGKSLVLQA
Sbjct: 361 TFRKEADFSTDDIILGKSLVLQA 383

[Close]

BLAST of IVF0007411 vs. ExPASy TrEMBL
Match: A0A0A0KZ66 (Epimerase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G500330 PE=3 SV=1)

HSP 1 Score: 775.4 bits (2001), Expect = 1.1e-220
Identity = 378/383 (98.69%), Postives = 381/383 (99.48%), Query Frame = 0


Query: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI 60
           MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI
Sbjct: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI 60

Query: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120
           LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR
Sbjct: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120

Query: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180
           KDFDFVKSSLSAAGFDVVYDINGREA EVEPI+DALPKLEQFIYCSSAGVYLKSDLLPHF
Sbjct: 121 KDFDFVKSSLSAAGFDVVYDINGREADEVEPIIDALPKLEQFIYCSSAGVYLKSDLLPHF 180

Query: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240
           EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP
Sbjct: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240

Query: 241 IPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300
           IPNSGIQITQLGHVKDLA AFVQVLGNDKASQQVFNISGEKYV+FDGLAKACAKAGGFPE
Sbjct: 241 IPNSGIQITQLGHVKDLANAFVQVLGNDKASQQVFNISGEKYVSFDGLAKACAKAGGFPE 300

Query: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRG 360
           PEIVHYNPKEFDFGKKKPFPFRDQHFFAS+EKAKSVLGWKPEFDLVEGLADSYNLDFGRG
Sbjct: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASIEKAKSVLGWKPEFDLVEGLADSYNLDFGRG 360

Query: 361 TFRKEADFSTDDIILGKSLVLQA 384
           TFRKEADFSTDDIILGKSLVLQA
Sbjct: 361 TFRKEADFSTDDIILGKSLVLQA 383

[Close]

BLAST of IVF0007411 vs. ExPASy TrEMBL
Match: A0A5A7SYF9 (Chloroplast stem-loop binding protein of 41 kDa b OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold103G00580 PE=3 SV=1)

HSP 1 Score: 774.2 bits (1998), Expect = 2.5e-220
Identity = 381/383 (99.48%), Postives = 381/383 (99.48%), Query Frame = 0


Query: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI 60
           MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHA  QYKRKVMQPKGGLHVTASAKKNI
Sbjct: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHA--QYKRKVMQPKGGLHVTASAKKNI 60

Query: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120
           LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR
Sbjct: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120

Query: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180
           KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF
Sbjct: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180

Query: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240
           EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP
Sbjct: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240

Query: 241 IPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300
           IPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPE
Sbjct: 241 IPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300

Query: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRG 360
           PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRG
Sbjct: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRG 360

Query: 361 TFRKEADFSTDDIILGKSLVLQA 384
           TFRKEADFSTDDIILGKSLVLQA
Sbjct: 361 TFRKEADFSTDDIILGKSLVLQA 381

[Close]

BLAST of IVF0007411 vs. ExPASy TrEMBL
Match: A0A6J1HAG5 (chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111462045 PE=3 SV=1)

HSP 1 Score: 768.1 bits (1982), Expect = 1.8e-218
Identity = 374/383 (97.65%), Postives = 379/383 (98.96%), Query Frame = 0


Query: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI 60
           MGIMANPMAAHHQK  SFSVLPSSLSDF+GARLHAQVQYKRKVMQPKG LHVTASAKKNI
Sbjct: 1   MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNI 60

Query: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120
           L+MGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGES+ADYADFKSK+LHLKGDR
Sbjct: 61  LVMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESDADYADFKSKVLHLKGDR 120

Query: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180
           KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF
Sbjct: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180

Query: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240
           EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP
Sbjct: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240

Query: 241 IPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300
           IPNSGIQITQLGHVKDLATAFVQVLGN+KASQQVFNISGEKYVTFDGLAKACAKAGGFPE
Sbjct: 241 IPNSGIQITQLGHVKDLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300

Query: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRG 360
           PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGL DSYNLDFGRG
Sbjct: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRG 360

Query: 361 TFRKEADFSTDDIILGKSLVLQA 384
           TFRKEADFSTDDIILGKSLVLQA
Sbjct: 361 TFRKEADFSTDDIILGKSLVLQA 383

[Close]

BLAST of IVF0007411 vs. NCBI nr
Match: XP_008442117.1 (PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucumis melo] >TYK05467.1 chloroplast stem-loop binding protein of 41 kDa b [Cucumis melo var. makuwa])

HSP 1 Score: 778 bits (2009), Expect = 5.24e-284
Identity = 383/383 (100.00%), Postives = 383/383 (100.00%), Query Frame = 0


Query: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI 60
           MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI
Sbjct: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI 60

Query: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120
           LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR
Sbjct: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120

Query: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180
           KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF
Sbjct: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180

Query: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240
           EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP
Sbjct: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240

Query: 241 IPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300
           IPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPE
Sbjct: 241 IPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300

Query: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRG 360
           PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRG
Sbjct: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRG 360

Query: 361 TFRKEADFSTDDIILGKSLVLQA 383
           TFRKEADFSTDDIILGKSLVLQA
Sbjct: 361 TFRKEADFSTDDIILGKSLVLQA 383

[Close]

BLAST of IVF0007411 vs. NCBI nr
Match: XP_004146391.1 (chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucumis sativus])

HSP 1 Score: 771 bits (1990), Expect = 4.13e-281
Identity = 378/383 (98.69%), Postives = 381/383 (99.48%), Query Frame = 0


Query: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI 60
           MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI
Sbjct: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI 60

Query: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120
           LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR
Sbjct: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120

Query: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180
           KDFDFVKSSLSAAGFDVVYDINGREA EVEPI+DALPKLEQFIYCSSAGVYLKSDLLPHF
Sbjct: 121 KDFDFVKSSLSAAGFDVVYDINGREADEVEPIIDALPKLEQFIYCSSAGVYLKSDLLPHF 180

Query: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240
           EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP
Sbjct: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240

Query: 241 IPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300
           IPNSGIQITQLGHVKDLA AFVQVLGNDKASQQVFNISGEKYV+FDGLAKACAKAGGFPE
Sbjct: 241 IPNSGIQITQLGHVKDLANAFVQVLGNDKASQQVFNISGEKYVSFDGLAKACAKAGGFPE 300

Query: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRG 360
           PEIVHYNPKEFDFGKKKPFPFRDQHFFAS+EKAKSVLGWKPEFDLVEGLADSYNLDFGRG
Sbjct: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASIEKAKSVLGWKPEFDLVEGLADSYNLDFGRG 360

Query: 361 TFRKEADFSTDDIILGKSLVLQA 383
           TFRKEADFSTDDIILGKSLVLQA
Sbjct: 361 TFRKEADFSTDDIILGKSLVLQA 383

[Close]

BLAST of IVF0007411 vs. NCBI nr
Match: KAA0034926.1 (chloroplast stem-loop binding protein of 41 kDa b [Cucumis melo var. makuwa])

HSP 1 Score: 769 bits (1987), Expect = 1.10e-280
Identity = 381/383 (99.48%), Postives = 381/383 (99.48%), Query Frame = 0


Query: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI 60
           MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQ  YKRKVMQPKGGLHVTASAKKNI
Sbjct: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQ--YKRKVMQPKGGLHVTASAKKNI 60

Query: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120
           LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR
Sbjct: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120

Query: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180
           KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF
Sbjct: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180

Query: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240
           EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP
Sbjct: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240

Query: 241 IPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300
           IPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPE
Sbjct: 241 IPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300

Query: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRG 360
           PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRG
Sbjct: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRG 360

Query: 361 TFRKEADFSTDDIILGKSLVLQA 383
           TFRKEADFSTDDIILGKSLVLQA
Sbjct: 361 TFRKEADFSTDDIILGKSLVLQA 381

[Close]

BLAST of IVF0007411 vs. NCBI nr
Match: XP_022961476.1 (chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucurbita moschata] >KAG6590501.1 Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 763 bits (1971), Expect = 3.25e-278
Identity = 374/383 (97.65%), Postives = 379/383 (98.96%), Query Frame = 0


Query: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI 60
           MGIMANPMAAHHQK  SFSVLPSSLSDF+GARLHAQVQYKRKVMQPKG LHVTASAKKNI
Sbjct: 1   MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNI 60

Query: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120
           L+MGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGES+ADYADFKSK+LHLKGDR
Sbjct: 61  LVMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESDADYADFKSKVLHLKGDR 120

Query: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180
           KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF
Sbjct: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180

Query: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240
           EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP
Sbjct: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240

Query: 241 IPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300
           IPNSGIQITQLGHVKDLATAFVQVLGN+KASQQVFNISGEKYVTFDGLAKACAKAGGFPE
Sbjct: 241 IPNSGIQITQLGHVKDLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300

Query: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRG 360
           PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGL DSYNLDFGRG
Sbjct: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRG 360

Query: 361 TFRKEADFSTDDIILGKSLVLQA 383
           TFRKEADFSTDDIILGKSLVLQA
Sbjct: 361 TFRKEADFSTDDIILGKSLVLQA 383

[Close]

BLAST of IVF0007411 vs. NCBI nr
Match: XP_023515393.1 (chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 761 bits (1966), Expect = 1.88e-277
Identity = 373/383 (97.39%), Postives = 378/383 (98.69%), Query Frame = 0


Query: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI 60
           MGIMANPMAAHHQK  SFSVLPSSLSDF+GARLHAQVQYKRKVMQPKG LHVTASA KNI
Sbjct: 1   MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASANKNI 60

Query: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120
           L+MGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGES+ADYADFKSK+LHLKGDR
Sbjct: 61  LVMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESDADYADFKSKVLHLKGDR 120

Query: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180
           KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF
Sbjct: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180

Query: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240
           EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP
Sbjct: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240

Query: 241 IPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300
           IPNSGIQITQLGHVKDLATAFVQVLGN+KASQQVFNISGEKYVTFDGLAKACAKAGGFPE
Sbjct: 241 IPNSGIQITQLGHVKDLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300

Query: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRG 360
           PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGL DSYNLDFGRG
Sbjct: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRG 360

Query: 361 TFRKEADFSTDDIILGKSLVLQA 383
           TFRKEADFSTDDIILGKSLVLQA
Sbjct: 361 TFRKEADFSTDDIILGKSLVLQA 383

[Close]

BLAST of IVF0007411 vs. TAIR 10
Match: AT1G09340.1 (chloroplast RNA binding )

HSP 1 Score: 672.9 bits (1735), Expect = 1.5e-193
Identity = 323/375 (86.13%), Postives = 349/375 (93.07%), Query Frame = 0


Query: 8   MAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNILIMGGTR 67
           M   HQ   SFS+L SSLSDFNGA+LH QVQYKRKV QPKG L+V+AS++K ILIMGGTR
Sbjct: 6   MLQQHQ--PSFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIMGGTR 65

Query: 68  FIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDRKDFDFVK 127
           FIG+FLSR+LVKEGHQVTLFTRGK+P+ +QLPGES+ D+ADF SKILHLKGDRKD+DFVK
Sbjct: 66  FIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYDFVK 125

Query: 128 SSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFEVDAVDP 187
           SSLSA GFDVVYDINGREA EVEPIL+ALPKLEQ+IYCSSAGVYLKSD+LPH E DAVDP
Sbjct: 126 SSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEEDAVDP 185

Query: 188 KSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGIQ 247
           KSRHKGKLETESLL SK VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+PNSGIQ
Sbjct: 186 KSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNSGIQ 245

Query: 248 ITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYN 307
           I+QLGHVKDLATAF+ VLGN+KAS+++FNISGEKYVTFDGLAKACAKAGGFPEPEIVHYN
Sbjct: 246 ISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYN 305

Query: 308 PKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRGTFRKEAD 367
           PKEFDFGKKK FPFRDQHFFASVEKAK VLGWKPEFDLVEGL DSYNLDFGRGTFRKEAD
Sbjct: 306 PKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEAD 365

Query: 368 FSTDDIILGKSLVLQ 383
           F+TDD+IL K LVLQ
Sbjct: 366 FTTDDMILSKKLVLQ 378

[Close]

BLAST of IVF0007411 vs. TAIR 10
Match: AT3G63140.1 (chloroplast stem-loop binding protein of 41 kDa )

HSP 1 Score: 202.2 bits (513), Expect = 7.4e-52
Identity = 129/370 (34.86%), Postives = 194/370 (52.43%), Query Frame = 0


Query: 16  TSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTA-SAKKNILIM----GGTRFIG 75
           +SFS L SS S  + + L   ++  R++   K  +  ++   KKN+LI+    GG   IG
Sbjct: 38  SSFSSLSSS-SSSSSSLLTFSLRTSRRLSPQKFTVKASSVGEKKNVLIVNTNSGGHAVIG 97

Query: 76  IFLSRLLVKEGHQVTLFTRG--KAPVTQQLPGESEADYADFKSKILHLKGDRKDFDFVKS 135
            + ++ L+  GH VT+ T G   +   ++ P    ++      K +   G+  +   V +
Sbjct: 98  FYFAKELLSAGHAVTILTVGDESSEKMKKPPFNRFSEIVSGGGKTVW--GNPAN---VAN 157

Query: 136 SLSAAGFDVVYDINGREAVEVEPILDALPK--LEQFIYCSSAGVYLKSDLLPHFEVDAVD 195
            +    FDVV D NG++   V P++D      ++QF++ SSAG+Y  ++  PH E DAV 
Sbjct: 158 VVGGETFDVVLDNNGKDLDTVRPVVDWAKSSGVKQFLFISSAGIYKSTEQPPHVEGDAVK 217

Query: 196 PKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGI 255
             + H   +  E  LA    NW S RP Y+ G  N    EEWFF R+   R +PIP SG+
Sbjct: 218 ADAGH---VVVEKYLAETFGNWASFRPQYMIGSGNNKDCEEWFFDRIVRDRAVPIPGSGL 277

Query: 256 QITQLGHVKDLATAFVQVLGN-DKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVH 315
           Q+T + HV+DL++     + N + AS  +FN   ++ VT DG+AK CA A G    EIVH
Sbjct: 278 QLTNISHVRDLSSMLTSAVANPEAASGNIFNCVSDRAVTLDGMAKLCAAAAG-KTVEIVH 337

Query: 316 YNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRGTFRKE 375
           Y+PK      KK F FR+ HF+A    AK +LGW+ + +L E L + +      G  +KE
Sbjct: 338 YDPKAIGVDAKKAFLFRNMHFYAEPRAAKDLLGWESKTNLPEDLKERFEEYVKIGRDKKE 397

[Close]

BLAST of IVF0007411 vs. TAIR 10
Match: AT1G75280.1 (NmrA-like negative transcriptional regulator family protein )

HSP 1 Score: 47.8 bits (112), Expect = 2.3e-05
Identity = 42/162 (25.93%), Postives = 73/162 (45.06%), Query Frame = 0


Query: 54  ASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKI 113
           A+ K  IL++GGT +IG FL     K GH      R +A ++  + G++   + D    I
Sbjct: 2   ATEKSKILVIGGTGYIGKFLVEASAKAGHSTFALVR-EATLSDPVKGKTVQSFKDLGVTI 61

Query: 114 LHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLK 173
           LH  GD  D + +  ++      V+  +   + ++   I+ A+           AG  +K
Sbjct: 62  LH--GDLNDHESLVKAIKQVDV-VISTVGSMQILDQTKIISAI---------KEAG-NVK 121

Query: 174 SDLLPHFEVD-----AVDP-KSRHKGKLETESLLASKDVNWT 210
             L   F VD     AV+P KS   GK++    + ++ + +T
Sbjct: 122 RFLPSEFGVDVDRTSAVEPAKSAFAGKIQIRRTIEAEGIPYT 149

The following BLAST results are available for this feature:

BLAST of IVF0007411 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SA52	2.1e-192	86.13	Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis ...	[more]
Q9LYA9	1.0e-50	34.86	Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis ...	[more]
O06485	9.0e-10	20.81	Putative sugar dehydratase/epimerase YfnG OS=Bacillus subtilis (strain 168) OX=2...	[more]

BLAST of IVF0007411 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C0Z4	6.9e-223	100.00	Chloroplast stem-loop binding protein of 41 kDa b OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3B4I6	6.9e-223	100.00	chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Cucumis melo...	[more]
A0A0A0KZ66	1.1e-220	98.69	Epimerase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G500330 P...	[more]
A0A5A7SYF9	2.5e-220	99.48	Chloroplast stem-loop binding protein of 41 kDa b OS=Cucumis melo var. makuwa OX...	[more]
A0A6J1HAG5	1.8e-218	97.65	chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Cucurbita mo...	[more]

BLAST of IVF0007411 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442117.1	5.24e-284	100.00	PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cuc...	[more]
XP_004146391.1	4.13e-281	98.69	chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucumis sativu...	[more]
KAA0034926.1	1.10e-280	99.48	chloroplast stem-loop binding protein of 41 kDa b [Cucumis melo var. makuwa]	[more]
XP_022961476.1	3.25e-278	97.65	chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucurbita mosc...	[more]
XP_023515393.1	1.88e-277	97.39	chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucurbita pepo...	[more]

BLAST of IVF0007411 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09340.1	1.5e-193	86.13	chloroplast RNA binding	[more]
AT3G63140.1	7.4e-52	34.86	chloroplast stem-loop binding protein of 41 kDa	[more]
AT1G75280.1	2.3e-05	25.93	NmrA-like negative transcriptional regulator family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.720		coord: 55..355 e-value: 1.4E-41 score: 144.6
None	No IPR available	PANTHER	PTHR43725	UDP-GLUCOSE 4-EPIMERASE	coord: 38..376
None	No IPR available	PANTHER	PTHR43725:SF6	CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA A, CHLOROPLASTIC	coord: 38..376
None	No IPR available	CDD	cd05265	SDR_a1	coord: 58..311 e-value: 2.09479E-97 score: 288.42
IPR001509	NAD-dependent epimerase/dehydratase	PFAM	PF01370	Epimerase	coord: 60..277 e-value: 3.3E-13 score: 49.7
IPR036291	NAD(P)-binding domain superfamily	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 57..351

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0007411.2	IVF0007411.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003723	RNA binding