IVF0007281 (gene) Melon (IVF77) v1

Overview


Name	IVF0007281
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr08: 14337177 .. 14337356 (+)
RNA-Seq Expression	IVF0007281
Synteny	IVF0007281

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATATTAAACGACATAAATAAAGAATTGAAAAATAAGAAACATGATGGAAAGAAATCACAAAAAAGAAAAAGAGAAAAGAATAAAGATGAAATCGCAGGGAAAGACGGAGAAGACGAAATAACAGGAGAAAGACGAATCGCGAGTAAGAAAAGAAAGATGGAAGGGCAAACCTAG

mRNA sequence

ATGGAGATATTAAACGACATAAATAAAGAATTGAAAAATAAGAAACATGATGGAAAGAAATCACAAAAAAGAAAAAGAGAAAAGAATAAAGATGAAATCGCAGGGAAAGACGGAGAAGACGAAATAACAGGAGAAAGACGAATCGCGAGTAAGAAAAGAAAGATGGAAGGGCAAACCTAG

Coding sequence (CDS)

ATGGAGATATTAAACGACATAAATAAAGAATTGAAAAATAAGAAACATGATGGAAAGAAATCACAAAAAAGAAAAAGAGAAAAGAATAAAGATGAAATCGCAGGGAAAGACGGAGAAGACGAAATAACAGGAGAAAGACGAATCGCGAGTAAGAAAAGAAAGATGGAAGGGCAAACCTAG

Protein sequence

MEILNDINKELKNKKHDGKKSQKRKREKNKDEIAGKDGEDEITGERRIASKKRKMEGQT

Homology

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BLAST of IVF0007281 vs. NCBI nr
Match: KAA0033511.1 (hypothetical protein E6C27_scaffold261G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 50.1 bits (118), Expect = 3.97e-05
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 21 SQKRKREKNKDEIAGKDGEDEITGERRIASKKRKMEGQT 59
          ++K+++E  KDEIAG+DG+DEITG RRIA K RKMEGQT
Sbjct: 5  NRKKEKENKKDEIAGEDGKDEITGGRRIARKNRKMEGQT 43

The following BLAST results are available for this feature:

BLAST of IVF0007281 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0007281 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0007281 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033511.1	3.97e-05	69.23	hypothetical protein E6C27_scaffold261G00530 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0007281 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0007281.1	IVF0007281.1	mRNA