IVF0007234 (gene) Melon (IVF77) v1

Overview


Name	IVF0007234
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	light-harvesting complex-like protein 3 isotype 1, chloroplastic
Location	chr07: 21548541 .. 21549674 (+)
RNA-Seq Expression	IVF0007234
Synteny	IVF0007234

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAATTGCTATCTCTGCCTCATTGCCAAGAGCAGCCAATCCAAATCATGTCTCCATGAAGAAAAAACAACAACATGCTCATCTAGCTAAACCTGCCTATTCCTCAATGACGAAAAACCCAACACCAAAGGTAATTAGTACTCTTGATGTCGGGAACCGAGACGATGGCGCTGCGCAGCAGCAGCATCATCATCGTGGAAATGTTGCATCATCAGCTGTGGTTAAGGTAGAGGAAGATAATGATGATTGGAATAACAATGGTGAAAGATTCACTGATAAGAGATGGAAAAATGGAACTTGGGATCTCAATATGTTTGTAAAGAATGGTAAGATGGACTGGGAAGGTGTCATCGTTGAAGGTGAGTGCATCTCATTTTGGTAGAGGGTATAATTTTGAGTTTCGGAAAGTAAATATCTCTAATTAATTAGTTATTGAAGGTGAATTTCAAATGATTTAGTCTTTACATGAGAAATTTAACGCTATATTTATATAAAATTGAGACATCTTTTGAAGAGAATTTAACAAATCTCTCGAGCTGTATCTATTGTTGTATATCTCACCGAGTATTGATGAAGTGAATTAGGAAGTTTGGATTAATGTTATAAATTGTACATATGTAGAAGCAAAGAGGAGGAAGTTTCTTGAATTACATCCAGAAGCAGCTACAAATGAAGAACCTGTGCTCTTTAGAAGCTCCATTATACCTTGGTGGGTATGGCTCACCAAGTCCTACCTTCCACAAGCCGAACTACTTAATGGTATATATATGATTGAAAAACAAATAACAATTAGATAAGTGTCTTATGATCCACTAAATTAAACTAACGTTTTGAATTGATATATGTTCTCAGTCATTTAATATATATGTGTTTGTTTGTTGATGATGATGATTAAGGTAGGGCAGCCATGATAGGGTTCTTCATGGGGTATGGAGTGGATGCATTAACAGGAATTGGAATAGTTGGACAAAGTGGGAATTTCATATGCAAAACAGCTCTTTTCTTAACTGTCATTGGTGTGTTGCTGTTTAGGCAAAGTGAAGATGTTGAGAACTTAAGAAATATAGCTGAAGAAGCCACCTTCTATGACAAGCAATGGCAATCTTCATGGCAAAAACAACCAAAATGA

mRNA sequence

ATGGCTTCAATTGCTATCTCTGCCTCATTGCCAAGAGCAGCCAATCCAAATCATGTCTCCATGAAGAAAAAACAACAACATGCTCATCTAGCTAAACCTGCCTATTCCTCAATGACGAAAAACCCAACACCAAAGGTAATTAGTACTCTTGATGTCGGGAACCGAGACGATGGCGCTGCGCAGCAGCAGCATCATCATCGTGGAAATGTTGCATCATCAGCTGTGGTTAAGGTAGAGGAAGATAATGATGATTGGAATAACAATGGTGAAAGATTCACTGATAAGAGATGGAAAAATGGAACTTGGGATCTCAATATGTTTGTAAAGAATGGTAAGATGGACTGGGAAGGTGTCATCGTTGAAGAAGCAAAGAGGAGGAAGTTTCTTGAATTACATCCAGAAGCAGCTACAAATGAAGAACCTGTGCTCTTTAGAAGCTCCATTATACCTTGGTGGGTATGGCTCACCAAGTCCTACCTTCCACAAGCCGAACTACTTAATGGTAGGGCAGCCATGATAGGGTTCTTCATGGGGTATGGAGTGGATGCATTAACAGGAATTGGAATAGTTGGACAAAGTGGGAATTTCATATGCAAAACAGCTCTTTTCTTAACTGTCATTGGTGTGTTGCTGTTTAGGCAAAGTGAAGATGTTGAGAACTTAAGAAATATAGCTGAAGAAGCCACCTTCTATGACAAGCAATGGCAATCTTCATGGCAAAAACAACCAAAATGA

Coding sequence (CDS)

ATGGCTTCAATTGCTATCTCTGCCTCATTGCCAAGAGCAGCCAATCCAAATCATGTCTCCATGAAGAAAAAACAACAACATGCTCATCTAGCTAAACCTGCCTATTCCTCAATGACGAAAAACCCAACACCAAAGGTAATTAGTACTCTTGATGTCGGGAACCGAGACGATGGCGCTGCGCAGCAGCAGCATCATCATCGTGGAAATGTTGCATCATCAGCTGTGGTTAAGGTAGAGGAAGATAATGATGATTGGAATAACAATGGTGAAAGATTCACTGATAAGAGATGGAAAAATGGAACTTGGGATCTCAATATGTTTGTAAAGAATGGTAAGATGGACTGGGAAGGTGTCATCGTTGAAGAAGCAAAGAGGAGGAAGTTTCTTGAATTACATCCAGAAGCAGCTACAAATGAAGAACCTGTGCTCTTTAGAAGCTCCATTATACCTTGGTGGGTATGGCTCACCAAGTCCTACCTTCCACAAGCCGAACTACTTAATGGTAGGGCAGCCATGATAGGGTTCTTCATGGGGTATGGAGTGGATGCATTAACAGGAATTGGAATAGTTGGACAAAGTGGGAATTTCATATGCAAAACAGCTCTTTTCTTAACTGTCATTGGTGTGTTGCTGTTTAGGCAAAGTGAAGATGTTGAGAACTTAAGAAATATAGCTGAAGAAGCCACCTTCTATGACAAGCAATGGCAATCTTCATGGCAAAAACAACCAAAATGA

Protein sequence

MASIAISASLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGAAQQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVIVEEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYGVDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSWQKQPK

Homology

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BLAST of IVF0007234 vs. ExPASy Swiss-Prot
Match: Q9SYX1 (Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.1 PE=1 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 9.9e-55
Identity = 99/170 (58.24%), Postives = 128/170 (75.29%), Query Frame = 0


Query: 71  ASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVIVEEAKRRKFLE 130
           A++  V VE +      +  +F D RW NGTWDL  F K+GK DW+ VIV EAKRRK+LE
Sbjct: 81  ATAKNVAVEGEEMKTTESVVKFQDARWINGTWDLKQFEKDGKTDWDSVIVAEAKRRKWLE 140

Query: 131 LHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYGVDALTGIGIV 190
            +PE  +N+EPVLF +SIIPWW W+ + +LP+AELLNGRAAMIGFFM Y VD+LTG+G+V
Sbjct: 141 ENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLV 200

Query: 191 GQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSWQ 241
            Q GNF CKT LF+ V GVL  R++EDV+ L+N+ +E T YDKQWQ++W+
Sbjct: 201 DQMGNFFCKTLLFVAVAGVLFIRKNEDVDKLKNLFDETTLYDKQWQAAWK 250

[Close]

BLAST of IVF0007234 vs. ExPASy Swiss-Prot
Match: Q6NKS4 (Light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.2 PE=1 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 3.0e-51
Identity = 88/151 (58.28%), Postives = 120/151 (79.47%), Query Frame = 0


Query: 91  RFTDKRWKNGTWDLNMFVKNGKMDWEGVIVEEAKRRKFLELHPEAATNEEPVLFRSSIIP 150
           ++ + +W NGTWDL  F K+GK DW+ VIV EAKRRK+LE +PE  +N+E V+F +SIIP
Sbjct: 98  KYQNAKWVNGTWDLKQFEKDGKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIP 157

Query: 151 WWVWLTKSYLPQAELLNGRAAMIGFFMGYGVDALTGIGIVGQSGNFICKTALFLTVIGVL 210
           WW W+ + +LP+AELLNGRAAMIGFFM Y VD+LTG+G+V Q GNF CKT LF+ V GVL
Sbjct: 158 WWAWMKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVL 217

Query: 211 LFRQSEDVENLRNIAEEATFYDKQWQSSWQK 242
             R++ED++ L+++ +E T YDKQWQ++W++
Sbjct: 218 FIRKNEDLDKLKDLFDETTLYDKQWQAAWKE 248

[Close]

BLAST of IVF0007234 vs. ExPASy TrEMBL
Match: A0A5D3CYT8 (Chlorophyll A-B binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00310 PE=4 SV=1)

HSP 1 Score: 495.4 bits (1274), Expect = 1.4e-136
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0


Query: 1   MASIAISASLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGAA 60
           MASIAISASLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGAA
Sbjct: 1   MASIAISASLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGAA 60

Query: 61  QQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVIV 120
           QQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVIV
Sbjct: 61  QQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVIV 120

Query: 121 EEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYG 180
           EEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYG
Sbjct: 121 EEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYG 180

Query: 181 VDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSWQ 240
           VDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSWQ
Sbjct: 181 VDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSWQ 240

Query: 241 KQPK 245
           KQPK
Sbjct: 241 KQPK 244

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BLAST of IVF0007234 vs. ExPASy TrEMBL
Match: A0A1S3BXB8 (uncharacterized protein LOC103494445 OS=Cucumis melo OX=3656 GN=LOC103494445 PE=4 SV=1)

HSP 1 Score: 495.4 bits (1274), Expect = 1.4e-136
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0


Query: 1   MASIAISASLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGAA 60
           MASIAISASLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGAA
Sbjct: 1   MASIAISASLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGAA 60

Query: 61  QQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVIV 120
           QQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVIV
Sbjct: 61  QQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVIV 120

Query: 121 EEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYG 180
           EEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYG
Sbjct: 121 EEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYG 180

Query: 181 VDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSWQ 240
           VDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSWQ
Sbjct: 181 VDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSWQ 240

Query: 241 KQPK 245
           KQPK
Sbjct: 241 KQPK 244

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BLAST of IVF0007234 vs. ExPASy TrEMBL
Match: A0A0A0KUF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025130 PE=4 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 4.3e-117
Identity = 214/241 (88.80%), Postives = 227/241 (94.19%), Query Frame = 0


Query: 1   MASIAISASLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGAA 60
           MASIAISASLPRA+N NHVSMKKKQ+  HLAKP YSS TKNPTPKVISTLDV NRDDGAA
Sbjct: 1   MASIAISASLPRASNSNHVSMKKKQR-VHLAKPGYSSTTKNPTPKVISTLDVVNRDDGAA 60

Query: 61  QQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVIV 120
           QQ  + RGN AS+ V + E++NDDWNNNGERFTDKRWKNGTWDLNMFV+NGKMDWEGVIV
Sbjct: 61  QQ--YRRGNAASAVVKEEEDNNDDWNNNGERFTDKRWKNGTWDLNMFVQNGKMDWEGVIV 120

Query: 121 EEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYG 180
           EEAKRRKFLE+HPEAATN+EPV+FRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGY 
Sbjct: 121 EEAKRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYA 180

Query: 181 VDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSWQ 240
           VDALTG+GIVGQSGNFICKTALFLTVIGVLLFRQSED+ENLRNIAEEATFYDKQWQSSWQ
Sbjct: 181 VDALTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQ 238

Query: 241 K 242
           K
Sbjct: 241 K 238

[Close]

BLAST of IVF0007234 vs. ExPASy TrEMBL
Match: A0A6J1JAE2 (light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482711 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 1.2e-95
Identity = 188/242 (77.69%), Postives = 204/242 (84.30%), Query Frame = 0


Query: 1   MASIAISASLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGAA 60
           MASIAISAS  R+   NHVS  KKQQHA  A+P YSSMTKNPTP++I T DVGNRD  AA
Sbjct: 47  MASIAISASFRRSCTSNHVS--KKQQHARQARPTYSSMTKNPTPELIRTPDVGNRD--AA 106

Query: 61  QQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVIV 120
                  GNVA SA  K+EED DD  N+G+ FTD+RWKNGTWDLNMFVKNGKMDWEGVIV
Sbjct: 107 FDAPKRHGNVA-SATDKLEEDTDDM-NHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIV 166

Query: 121 EEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYG 180
            EAKRRKFLEL+PE ATN+EPVLFRSSIIPWW WLTKSYLPQAELLNGRAAMIGFFM Y 
Sbjct: 167 AEAKRRKFLELYPETATNQEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYL 226

Query: 181 VDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSWQ 240
           VDALTGIGIVGQSGNFI K ALF+TVIGVLLFRQ++D+E LR +AEEATFYDKQWQ+SWQ
Sbjct: 227 VDALTGIGIVGQSGNFISKAALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQ 282

Query: 241 KQ 243
            Q
Sbjct: 287 NQ 282

[Close]

BLAST of IVF0007234 vs. ExPASy TrEMBL
Match: A0A6J1E3P1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111430544 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 2.1e-92
Identity = 182/242 (75.21%), Postives = 204/242 (84.30%), Query Frame = 0


Query: 1   MASIAISASLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGAA 60
           MASIAISAS PR+   NHVS K++++    A+P YSSMTKNPTP++I T  VG+RD   A
Sbjct: 1   MASIAISASFPRSCTSNHVSNKQQRRQ---ARPTYSSMTKNPTPELIKTPYVGDRDALDA 60

Query: 61  QQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVIV 120
            ++H   GNVA SA  K+EED DD  N+G+ FTD+RWKNGTWDLNMFVKNGKMDWEGVIV
Sbjct: 61  PKRH---GNVA-SATDKLEEDTDDM-NHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIV 120

Query: 121 EEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYG 180
            EAKRRKFLEL+PE ATN EPVLFRSSIIPWW WLTKSYLPQAELLNGRAAMIGFFM Y 
Sbjct: 121 AEAKRRKFLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYL 180

Query: 181 VDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSWQ 240
           VDALTGIGIVGQSGNFI K ALF+TVIGVLLFRQ++D+E LR +AEEATFYDKQWQ+SWQ
Sbjct: 181 VDALTGIGIVGQSGNFISKAALFVTVIGVLLFRQTKDIEGLRKLAEEATFYDKQWQASWQ 234

Query: 241 KQ 243
            Q
Sbjct: 241 NQ 234

[Close]

BLAST of IVF0007234 vs. NCBI nr
Match: XP_008453842.1 (PREDICTED: uncharacterized protein LOC103494445 [Cucumis melo] >KAA0044687.1 Chlorophyll A-B binding protein [Cucumis melo var. makuwa] >TYK16897.1 Chlorophyll A-B binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 496 bits (1277), Expect = 4.12e-177
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0


Query: 1   MASIAISASLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGAA 60
           MASIAISASLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGAA
Sbjct: 1   MASIAISASLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGAA 60

Query: 61  QQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVIV 120
           QQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVIV
Sbjct: 61  QQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVIV 120

Query: 121 EEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYG 180
           EEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYG
Sbjct: 121 EEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYG 180

Query: 181 VDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSWQ 240
           VDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSWQ
Sbjct: 181 VDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSWQ 240

Query: 241 KQPK 244
           KQPK
Sbjct: 241 KQPK 244

[Close]

BLAST of IVF0007234 vs. NCBI nr
Match: XP_004146894.2 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucumis sativus] >KGN53183.1 hypothetical protein Csa_014674 [Cucumis sativus])

HSP 1 Score: 431 bits (1109), Expect = 1.45e-151
Identity = 214/241 (88.80%), Postives = 227/241 (94.19%), Query Frame = 0


Query: 1   MASIAISASLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGAA 60
           MASIAISASLPRA+N NHVSMKKKQ+  HLAKP YSS TKNPTPKVISTLDV NRDDGAA
Sbjct: 1   MASIAISASLPRASNSNHVSMKKKQR-VHLAKPGYSSTTKNPTPKVISTLDVVNRDDGAA 60

Query: 61  QQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVIV 120
           QQ  + RGN AS+ V + E++NDDWNNNGERFTDKRWKNGTWDLNMFV+NGKMDWEGVIV
Sbjct: 61  QQ--YRRGNAASAVVKEEEDNNDDWNNNGERFTDKRWKNGTWDLNMFVQNGKMDWEGVIV 120

Query: 121 EEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYG 180
           EEAKRRKFLE+HPEAATN+EPV+FRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGY 
Sbjct: 121 EEAKRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYA 180

Query: 181 VDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSWQ 240
           VDALTG+GIVGQSGNFICKTALFLTVIGVLLFRQSED+ENLRNIAEEATFYDKQWQSSWQ
Sbjct: 181 VDALTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQ 238

[Close]

BLAST of IVF0007234 vs. NCBI nr
Match: XP_038875279.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 359 bits (921), Expect = 3.46e-123
Identity = 188/242 (77.69%), Postives = 202/242 (83.47%), Query Frame = 0


Query: 1   MASIAISASLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGAA 60
           MASIAISASLPRA+  NHV +KK                 NPT KVISTLDVG+RD   A
Sbjct: 1   MASIAISASLPRASTSNHVFVKK-----------------NPTQKVISTLDVGDRDGVGA 60

Query: 61  QQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVIV 120
            ++H   GNVAS A  KVEEDNDDWN+ GE+FTDKRWKNGTWDLNMFVKNGKMDWEGVIV
Sbjct: 61  VERH---GNVAS-AREKVEEDNDDWNH-GEKFTDKRWKNGTWDLNMFVKNGKMDWEGVIV 120

Query: 121 EEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYG 180
            EAKRRKFLEL+PEAATN+EPVLFRSS+IPWW WLTKSYLPQAELLNGRAAMIGFFM Y 
Sbjct: 121 AEAKRRKFLELYPEAATNQEPVLFRSSVIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYI 180

Query: 181 VDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSWQ 240
           VDALTGIGIVGQSGNFICK ALF TVIGVLLFRQ+ED+E+LRNIAEEAT YDKQWQ+SWQ
Sbjct: 181 VDALTGIGIVGQSGNFICKAALFFTVIGVLLFRQTEDIESLRNIAEEATLYDKQWQTSWQ 220

Query: 241 KQ 242
            Q
Sbjct: 241 NQ 220

[Close]

BLAST of IVF0007234 vs. NCBI nr
Match: XP_022984403.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 360 bits (924), Expect = 1.14e-122
Identity = 187/242 (77.27%), Postives = 204/242 (84.30%), Query Frame = 0


Query: 1   MASIAISASLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGAA 60
           MASIAISAS  R+   NHVS  KKQQHA  A+P YSSMTKNPTP++I T DVGNRD    
Sbjct: 47  MASIAISASFRRSCTSNHVS--KKQQHARQARPTYSSMTKNPTPELIRTPDVGNRDAAFD 106

Query: 61  QQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVIV 120
             + H  GNVAS A  K+EED DD N+ G+ FTD+RWKNGTWDLNMFVKNGKMDWEGVIV
Sbjct: 107 APKRH--GNVAS-ATDKLEEDTDDMNH-GQTFTDERWKNGTWDLNMFVKNGKMDWEGVIV 166

Query: 121 EEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYG 180
            EAKRRKFLEL+PE ATN+EPVLFRSSIIPWW WLTKSYLPQAELLNGRAAMIGFFM Y 
Sbjct: 167 AEAKRRKFLELYPETATNQEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYL 226

Query: 181 VDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSWQ 240
           VDALTGIGIVGQSGNFI K ALF+TVIGVLLFRQ++D+E LR +AEEATFYDKQWQ+SWQ
Sbjct: 227 VDALTGIGIVGQSGNFISKAALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQ 282

Query: 241 KQ 242
            Q
Sbjct: 287 NQ 282

[Close]

BLAST of IVF0007234 vs. NCBI nr
Match: XP_023551912.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 357 bits (916), Expect = 3.64e-122
Identity = 185/242 (76.45%), Postives = 206/242 (85.12%), Query Frame = 0


Query: 1   MASIAISASLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGAA 60
           MASIAISAS PR+   NHVS  K QQHA  A+P +SSMTKNPTP++I T DVG+RD   A
Sbjct: 1   MASIAISASFPRSCTSNHVS--KNQQHARQARPTHSSMTKNPTPELIRTPDVGDRDAFDA 60

Query: 61  QQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVIV 120
            ++H   GNVAS A  K+EED DD N+ G+ FTD+RWKNGTWDLNMFVKNGKMDWEGVIV
Sbjct: 61  PKRH---GNVAS-ATDKLEEDTDDLNH-GKTFTDERWKNGTWDLNMFVKNGKMDWEGVIV 120

Query: 121 EEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYG 180
            EAKRRKFLEL+PE ATN EPVLFRSSIIPWW WLT+SYLPQAELLNGRAAMIGFFM Y 
Sbjct: 121 AEAKRRKFLELYPETATNHEPVLFRSSIIPWWAWLTRSYLPQAELLNGRAAMIGFFMAYL 180

Query: 181 VDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSWQ 240
           VDALTGIGIVGQSGNFI K+ALF+TVIGVLLFRQ++D+E LR +AEEATFYDKQWQ+SWQ
Sbjct: 181 VDALTGIGIVGQSGNFISKSALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQ 235

Query: 241 KQ 242
            Q
Sbjct: 241 NQ 235

[Close]

BLAST of IVF0007234 vs. TAIR 10
Match: AT4G17600.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 214.9 bits (546), Expect = 7.1e-56
Identity = 99/170 (58.24%), Postives = 128/170 (75.29%), Query Frame = 0


Query: 71  ASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVIVEEAKRRKFLE 130
           A++  V VE +      +  +F D RW NGTWDL  F K+GK DW+ VIV EAKRRK+LE
Sbjct: 81  ATAKNVAVEGEEMKTTESVVKFQDARWINGTWDLKQFEKDGKTDWDSVIVAEAKRRKWLE 140

Query: 131 LHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYGVDALTGIGIV 190
            +PE  +N+EPVLF +SIIPWW W+ + +LP+AELLNGRAAMIGFFM Y VD+LTG+G+V
Sbjct: 141 ENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLV 200

Query: 191 GQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSWQ 241
            Q GNF CKT LF+ V GVL  R++EDV+ L+N+ +E T YDKQWQ++W+
Sbjct: 201 DQMGNFFCKTLLFVAVAGVLFIRKNEDVDKLKNLFDETTLYDKQWQAAWK 250

[Close]

BLAST of IVF0007234 vs. TAIR 10
Match: AT5G47110.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 203.4 bits (516), Expect = 2.1e-52
Identity = 88/151 (58.28%), Postives = 120/151 (79.47%), Query Frame = 0


Query: 91  RFTDKRWKNGTWDLNMFVKNGKMDWEGVIVEEAKRRKFLELHPEAATNEEPVLFRSSIIP 150
           ++ + +W NGTWDL  F K+GK DW+ VIV EAKRRK+LE +PE  +N+E V+F +SIIP
Sbjct: 98  KYQNAKWVNGTWDLKQFEKDGKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIP 157

Query: 151 WWVWLTKSYLPQAELLNGRAAMIGFFMGYGVDALTGIGIVGQSGNFICKTALFLTVIGVL 210
           WW W+ + +LP+AELLNGRAAMIGFFM Y VD+LTG+G+V Q GNF CKT LF+ V GVL
Sbjct: 158 WWAWMKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVL 217

Query: 211 LFRQSEDVENLRNIAEEATFYDKQWQSSWQK 242
             R++ED++ L+++ +E T YDKQWQ++W++
Sbjct: 218 FIRKNEDLDKLKDLFDETTLYDKQWQAAWKE 248

The following BLAST results are available for this feature:

BLAST of IVF0007234 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYX1	9.9e-55	58.24	Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis ...	[more]
Q6NKS4	3.0e-51	58.28	Light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Arabidopsis ...	[more]

BLAST of IVF0007234 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CYT8	1.4e-136	100.00	Chlorophyll A-B binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BXB8	1.4e-136	100.00	uncharacterized protein LOC103494445 OS=Cucumis melo OX=3656 GN=LOC103494445 PE=...	[more]
A0A0A0KUF5	4.3e-117	88.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025130 PE=4 SV=1	[more]
A0A6J1JAE2	1.2e-95	77.69	light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita ma...	[more]
A0A6J1E3P1	2.1e-92	75.21	light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita mo...	[more]

BLAST of IVF0007234 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453842.1	4.12e-177	100.00	PREDICTED: uncharacterized protein LOC103494445 [Cucumis melo] >KAA0044687.1 Chl...	[more]
XP_004146894.2	1.45e-151	88.80	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucumis sativu...	[more]
XP_038875279.1	3.46e-123	77.69	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Benincasa hisp...	[more]
XP_022984403.1	1.14e-122	77.27	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita maxi...	[more]
XP_023551912.1	3.64e-122	76.45	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita pepo...	[more]

BLAST of IVF0007234 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17600.1	7.1e-56	58.24	Chlorophyll A-B binding family protein	[more]
AT5G47110.1	2.1e-52	58.28	Chlorophyll A-B binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..43
None	No IPR available	PANTHER	PTHR14154:SF56	FACTOR, PUTATIVE-RELATED	coord: 13..243
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 13..243
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 152..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0007234.1	IVF0007234.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane