IVF0007152 (gene) Melon (IVF77) v1

Overview
NameIVF0007152
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Locationchr01: 5929494 .. 5929697 (-)
RNA-Seq ExpressionIVF0007152
SyntenyIVF0007152
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAATCAAAACAACAAAGAAATCCTTGCCAATCAGAATGCTAAGGAACAAAACCCGGCCTACCTATCTCATGATTTGGATAAACCCATACTATCATATACTTCACCTAATCTCTATGATTTCAACCCTGGTATTGCTTACCCTACATTCGGTGAGAATGCAAGATTTGAAATCAAGTCAATCATGCTTCAAATGATTTAG

mRNA sequence

ATGGAGAATCAAAACAACAAAGAAATCCTTGCCAATCAGAATGCTAAGGAACAAAACCCGGCCTACCTATCTCATGATTTGGATAAACCCATACTATCATATACTTCACCTAATCTCTATGATTTCAACCCTGGTATTGCTTACCCTACATTCGGTGAGAATGCAAGATTTGAAATCAAGTCAATCATGCTTCAAATGATTTAG

Coding sequence (CDS)

ATGGAGAATCAAAACAACAAAGAAATCCTTGCCAATCAGAATGCTAAGGAACAAAACCCGGCCTACCTATCTCATGATTTGGATAAACCCATACTATCATATACTTCACCTAATCTCTATGATTTCAACCCTGGTATTGCTTACCCTACATTCGGTGAGAATGCAAGATTTGAAATCAAGTCAATCATGCTTCAAATGATTTAG

Protein sequence

MENQNNKEILANQNAKEQNPAYLSHDLDKPILSYTSPNLYDFNPGIAYPTFGENARFEIKSIMLQMI
Homology
BLAST of IVF0007152 vs. ExPASy TrEMBL
Match: A0A5A7V2U7 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001950 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.8e-17
Identity = 47/67 (70.15%), Postives = 53/67 (79.10%), Query Frame = 0

Query: 1  MENQNNKEILANQNAKEQNPAYLSHDLDKPILSYTSPNLYDFNPGIAYPTFGENARFEIK 60
          M NQNN+ I ANQ A+  NP YL+ D D+PI SY SPNLYDFNPGIAYPTF EN RFEIK
Sbjct: 1  MNNQNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIK 60

Query: 61 SIMLQMI 68
           +MLQ+I
Sbjct: 61 LVMLQII 67

BLAST of IVF0007152 vs. ExPASy TrEMBL
Match: A0A5A7UDN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00900 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.9e-17
Identity = 48/66 (72.73%), Postives = 51/66 (77.27%), Query Frame = 0

Query: 1  MENQNNKEILANQNAKEQNPAYLSHDLDKPILSYTSPNLYDFNPGIAYPTFGENARFEIK 60
          M NQNN    A QN +EQNPAYL+HDLDKPI SY SPNLYDFNPGIAY  FGEN  FEIK
Sbjct: 1  MNNQNNP---AYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIK 60

Query: 61 SIMLQM 67
           +ML M
Sbjct: 61 HLMLYM 63

BLAST of IVF0007152 vs. ExPASy TrEMBL
Match: A0A5A7U2F0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001090 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.4e-14
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 0

Query: 1  MENQNNKEILANQNAKEQNPAYLSHDLDKPILSYTSPNLYDFNPGIAYPTFGENA 56
          +ENQNNK +  NQNA+EQNP YL+H +DKPI SY S NLYDFNP I YPTFGEN+
Sbjct: 10 IENQNNKGVATNQNAQEQNPTYLAHYMDKPIRSYASQNLYDFNPCITYPTFGENS 64

BLAST of IVF0007152 vs. ExPASy TrEMBL
Match: A0A5D3CAB5 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00060 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.3e-12
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 0

Query: 3   NQNNKEILANQNAKEQNPAYLSHDLDKPILSYTSPNLYDFNPGIAYPTFGENARFEIKSI 62
           +QNN+E  ANQ  +  N  YL+H+ D+PI S TSPNLY FNPGI YP FGEN RF+IK +
Sbjct: 37  SQNNQEAPANQAIQVVNLTYLAHNRDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPV 96

Query: 63  MLQMI 68
           ML ++
Sbjct: 97  MLSLL 101

BLAST of IVF0007152 vs. ExPASy TrEMBL
Match: A0A5A7UXZ2 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00610 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.3e-12
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 0

Query: 3   NQNNKEILANQNAKEQNPAYLSHDLDKPILSYTSPNLYDFNPGIAYPTFGENARFEIKSI 62
           +QNN+E  ANQ  +  N  YL+H+ D+PI S TSPNLY FNPGI YP FGEN RF+IK +
Sbjct: 37  SQNNQEAPANQAIQVVNLTYLAHNRDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPV 96

Query: 63  MLQMI 68
           ML ++
Sbjct: 97  MLSLL 101

BLAST of IVF0007152 vs. NCBI nr
Match: KAA0062403.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK26578.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 3.22e-24
Identity = 47/67 (70.15%), Postives = 53/67 (79.10%), Query Frame = 0

Query: 1  MENQNNKEILANQNAKEQNPAYLSHDLDKPILSYTSPNLYDFNPGIAYPTFGENARFEIK 60
          M NQNN+ I ANQ A+  NP YL+ D D+PI SY SPNLYDFNPGIAYPTF EN RFEIK
Sbjct: 1  MNNQNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIK 60

Query: 61 SIMLQMI 67
           +MLQ+I
Sbjct: 61 LVMLQII 67

BLAST of IVF0007152 vs. NCBI nr
Match: KAA0051815.1 (hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK21429.1 hypothetical protein E5676_scaffold609G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 2.08e-23
Identity = 48/66 (72.73%), Postives = 51/66 (77.27%), Query Frame = 0

Query: 1  MENQNNKEILANQNAKEQNPAYLSHDLDKPILSYTSPNLYDFNPGIAYPTFGENARFEIK 60
          M NQNN    A QN +EQNPAYL+HDLDKPI SY SPNLYDFNPGIAY  FGEN  FEIK
Sbjct: 1  MNNQNNP---AYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIK 60

Query: 61 SIMLQM 66
           +ML M
Sbjct: 61 HLMLYM 63

BLAST of IVF0007152 vs. NCBI nr
Match: KAA0047845.1 (hypothetical protein E6C27_scaffold133G001090 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 9.96e-19
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 0

Query: 1  MENQNNKEILANQNAKEQNPAYLSHDLDKPILSYTSPNLYDFNPGIAYPTFGENA 55
          +ENQNNK +  NQNA+EQNP YL+H +DKPI SY S NLYDFNP I YPTFGEN+
Sbjct: 10 IENQNNKGVATNQNAQEQNPTYLAHYMDKPIRSYASQNLYDFNPCITYPTFGENS 64

BLAST of IVF0007152 vs. NCBI nr
Match: TYK08803.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.94e-16
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 0

Query: 4   QNNKEILANQNAKEQNPAYLSHDLDKPILSYTSPNLYDFNPGIAYPTFGENARFEIKSIM 63
           QNN+E  ANQ  +  N  YL+H+ D+PI S TSPNLY FNPGI YP FGEN RF+IK +M
Sbjct: 38  QNNQEAPANQAIQVVNLTYLAHNRDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVM 97

Query: 64  LQMI 67
           L ++
Sbjct: 98  LSLL 101

BLAST of IVF0007152 vs. NCBI nr
Match: KAA0060833.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.94e-16
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 0

Query: 4   QNNKEILANQNAKEQNPAYLSHDLDKPILSYTSPNLYDFNPGIAYPTFGENARFEIKSIM 63
           QNN+E  ANQ  +  N  YL+H+ D+PI S TSPNLY FNPGI YP FGEN RF+IK +M
Sbjct: 38  QNNQEAPANQAIQVVNLTYLAHNRDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVM 97

Query: 64  LQMI 67
           L ++
Sbjct: 98  LSLL 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V2U71.8e-1770.15Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7UDN88.9e-1772.73Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U2F05.4e-1470.91Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CAB52.3e-1258.46Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
A0A5A7UXZ22.3e-1258.46Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
Match NameE-valueIdentityDescription
KAA0062403.13.22e-2470.15putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK... [more]
KAA0051815.12.08e-2372.73hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK2142... [more]
KAA0047845.19.96e-1970.91hypothetical protein E6C27_scaffold133G001090 [Cucumis melo var. makuwa][more]
TYK08803.11.94e-1659.38Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... [more]
KAA0060833.11.94e-1659.38Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0007152.1IVF0007152.1mRNA